Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0004630

Physical Location & Seq

Genomic Coordinates Reverse (-)

19899124 .. 19902937

Gene Structure 3814 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g28740.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGTGGTCAATTTAGAGTTTATAAAGGCTATAGTTACTGCCGAAGAGGTTCTATTGCTTGATCCTCTGCGCCAGGAGGTTCTTCCCTTTGCCGATCAGCTAAGGCAACAGCTTCCTTATAAAACCCAATCCAGGGTTGATGAACTGGATTCAACCGCTCCACAATGGTTACCTCTTCCTGAGGCAGTTGAAGGTTTGCAATGTGATCTCCCATTTGAGTTTCAGGTTCTCGAGATTGCTCTAGAAGTTGTCTGTACATTCTTGGATTCCAGTGTGGCTGACCTTGAGATGGAAGCTTACCCTGTTCTTGATGAACTCGCCAGAAATGTTAGCACCAATAATCTTGAACTTGTTCGCAGTTTGAAAAGCAATCTCACCCGTTTGCTTGCACGAGTACAGAAGGTCAGAGATGAAATTGAGCATTTGTTGGATGACAATGAAGACATGGCACATTTATATTTGACAAGAAAGTGGATTCAGAACCAACAATCTGAGGCTTTGTTGGTCCGTTCTGGCTCAAATAGCATCAGTCCTATTGCGCCCAATCTCCGTCGGCTAAGTTCTAATAGAAGTGCTAGTTTGGTAACTAGCAACAACATGGGTGAAGATGATGTAGAGGATTTAGAAATGTTGCTTGAGGCTTACTTTATGCAACTTGATGGAACTCGTAACAAGATATTGTCGGTACGGGAGTATATAGATGACACAGAGGACTACGTCAACATTCAACTTGACAACCAGCGAAACGAACTCATTCAGCTCCAATTAACATTGACCATTGCATCATTTGCTATAGCCGTTGAGACCTTGATTGCTGGAATATTTGGTATGAACATTCCCTGTGTACTATACAAAAAGGATGGGATATTTGAGTTCTTTGTTGGAAGTATTACTGCATTTTCGGTATTGCTTTTCTTCCTTGTTTTTGGGTATGCAAGGTGGAAGAAGCTGCTTGGTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0007275 GO:0008150 GO:0008324 GO:0009555 GO:0015075 GO:0015095 GO:0015318 GO:0015693 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0032501 GO:0032502 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1903830

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CorA

Protein Analysis

321

Amino Acids

36.4

Weight (kDa)

4.47

Isoelectric Point (pI)

47.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MRS2-like	PF22099	69 - 268	5.7e-25	Magnesium transporter MRS2-like
CorA	PF01544	221 - 413	1.4e-07	CorA-like Mg2+ transporter protein
MRS2-like	PF22099	300 - 353	4e-07	Magnesium transporter MRS2-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004630)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58970
fragaria_vesca	FvH4_5g28740 FvH4_5g28740 FvH4_5g28740 FvH4_5g28740 FvH4_5g28740 FvH4_5g28740
malus_domestica	MD08G1238500.v1.1 MD08G1238700.v1.1 MD15G1430500.v1.1
prunus_persica	Prupe.1G575700_v2.0.a1
pyrus_communis	pycom08g20700 pycom08g20720 pycom15g38020 pycom420g00390 pycom420g00500 pycom420g00530
rosa_chinensis	RchiOBHm_Chr1g0372101 RchiOBHm_Chr6g0246761
rosa_laevigata	RLG00000015250 RLG00000026923
rosa_multiflora	Rmu_sc0001755.1_g000027 Rmu_sc0003131.1_g000033
rosa_roxburghii	Rroxscaffold_4G00285260 Rroxscaffold_7G00214470
rosa_rugosa	Rorug01G0369700
rosa_samantha	Rh1AG378000 Rh1BG341400 Rh1CG354800 Rh1DG372500
rosa_wichuraiana	Rw1G033260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	23, 120
AccBSI	CCGCTC	1 cut(s)	158
AciI	CCGC	1 cut(s)	156
AclWI	GGATC	1 cut(s)	56
AfaI	GTAC	4 cut(s)	256, 396, 687, 846
AfiI	CCNNNNNNNGG	3 cut(s)	132, 133, 289
AgsI	TTSAA	5 cut(s)	153, 191, 347, 364, 728
AjnI	CCWGG	2 cut(s)	72, 131
AluBI	AGCT	5 cut(s)	100, 112, 296, 760, 949
AluI	AGCT	5 cut(s)	100, 112, 296, 760, 949
Alw26I	GTCTC	1 cut(s)	797
AlwI	GGATC	1 cut(s)	56
Ama87I	CYCGRG	1 cut(s)	230
ApeKI	GCWGC	1 cut(s)	949
Asp700I	GAANNNNTTC	3 cut(s)	48, 351, 753
AspLEI	GCGC	2 cut(s)	72, 541
AspS9I	GGNCC	1 cut(s)	505
AsuHPI	GGTGA	2 cut(s)	367, 614
AvaI	CYCGRG	1 cut(s)	230
AvaII	GGWCC	1 cut(s)	505
AxyI	CCTNAGG	1 cut(s)	180
BaeI	ACNNNNGTAYC	2 cut(s)	677, 710
BauI	CACGAG	1 cut(s)	390
BbsI	GAAGAC	1 cut(s)	447
BbvI	GCAGC	1 cut(s)	936
BccI	CCATC	3 cut(s)	283, 653, 854
BceAI	ACGGC	1 cut(s)	782
BciT130I	CCWGG	2 cut(s)	74, 133
BcoDI	GTCTC	1 cut(s)	797
BfaI	CTAG	3 cut(s)	242, 576, 588
BfmI	CTRYAG	2 cut(s)	30, 792
BisI	GCNGC	1 cut(s)	950
BlsI	GCNGC	1 cut(s)	951
Bme1390I	CCNGG	2 cut(s)	74, 133
Bme18I	GGWCC	1 cut(s)	505
BmeT110I	CYCGRG	1 cut(s)	230
BmgT120I	GGNCC	1 cut(s)	505
BmrFI	CCNGG	2 cut(s)	74, 133
BmsI	GCATC	2 cut(s)	534, 791
BpiI	GAAGAC	1 cut(s)	447
Bpu10I	CCTNAGC	1 cut(s)	101
BpuEI	CTTGAG	2 cut(s)	305, 656
BsaI	GGTCTC	1 cut(s)	797
BsaJI	CCNNGG	1 cut(s)	132
Bsc4I	CCNNNNNNNGG	3 cut(s)	132, 133, 289
Bse1I	ACTGG	2 cut(s)	150, 270
Bse21I	CCTNAGG	1 cut(s)	180
Bse3DI	GCAATG	2 cut(s)	206, 777
BseBI	CCWGG	2 cut(s)	74, 133
BseDI	CCNNGG	1 cut(s)	132
BseGI	GGATG	2 cut(s)	436, 865
BseLI	CCNNNNNNNGG	3 cut(s)	132, 133, 289
BseMI	GCAATG	2 cut(s)	206, 777
BseMII	CTCAG	2 cut(s)	171, 483
BseNI	ACTGG	2 cut(s)	150, 270
BseXI	GCAGC	1 cut(s)	936
BsiHKCI	CYCGRG	1 cut(s)	230
BslI	CCNNNNNNNGG	3 cut(s)	132, 133, 289
BsmAI	GTCTC	1 cut(s)	797
Bso31I	GGTCTC	1 cut(s)	797
BsoBI	CYCGRG	1 cut(s)	230
Bsp1407I	TGTACA	1 cut(s)	254
Bsp143I	GATC	3 cut(s)	61, 94, 205
BspACI	CCGC	1 cut(s)	156
BspCNI	CTCAG	2 cut(s)	172, 484
BspHI	TCATGA	1 cut(s)	959
BspPI	GGATC	1 cut(s)	56
BspTNI	GGTCTC	1 cut(s)	797
BsrBI	CCGCTC	1 cut(s)	158
BsrDI	GCAATG	2 cut(s)	206, 777
BsrGI	TGTACA	1 cut(s)	254
BsrI	ACTGG	2 cut(s)	150, 270
BssECI	CCNNGG	1 cut(s)	132
BssMI	GATC	3 cut(s)	61, 94, 205
BssSI	CACGAG	1 cut(s)	390
Bst2BI	CACGAG	1 cut(s)	390
Bst2UI	CCWGG	2 cut(s)	74, 133
Bst6I	CTCTTC	2 cut(s)	39, 180
BstAPI	GCANNNNNTGC	1 cut(s)	788
BstAUI	TGTACA	1 cut(s)	254
BstC8I	GCNNGC	1 cut(s)	387
BstDEI	CTNAG	4 cut(s)	101, 180, 492, 557
BstEII	GGTNACC	1 cut(s)	168
BstF5I	GGATG	2 cut(s)	436, 865
BstHHI	GCGC	2 cut(s)	72, 541
BstKTI	GATC	3 cut(s)	64, 97, 208
BstMAI	GTCTC	1 cut(s)	797
BstMBI	GATC	3 cut(s)	61, 94, 205
BstMWI	GCNNNNNNNGC	2 cut(s)	522, 788
BstNI	CCWGG	2 cut(s)	74, 133
BstPI	GGTNACC	1 cut(s)	168
BstSCI	CCNGG	2 cut(s)	72, 131
BstSFI	CTRYAG	2 cut(s)	30, 792
BstV1I	GCAGC	1 cut(s)	936
BstV2I	GAAGAC	1 cut(s)	447
Bsu36I	CCTNAGG	1 cut(s)	180
BtsCI	GGATG	2 cut(s)	436, 865
BtsIMutI	CAGTG	1 cut(s)	277
Cac8I	GCNNGC	1 cut(s)	387
CciI	TCATGA	1 cut(s)	959
CfoI	GCGC	2 cut(s)	72, 541
Cfr13I	GGNCC	1 cut(s)	505
Csp6I	GTAC	4 cut(s)	255, 395, 686, 845
CviAII	CATG	3 cut(s)	445, 598, 960
CviQI	GTAC	4 cut(s)	255, 395, 686, 845
DdeI	CTNAG	4 cut(s)	101, 180, 492, 557
DpnI	GATC	3 cut(s)	63, 96, 207
DpnII	GATC	3 cut(s)	61, 94, 205
Eam1104I	CTCTTC	2 cut(s)	39, 180
EarI	CTCTTC	2 cut(s)	39, 180
Eco31I	GGTCTC	1 cut(s)	797
Eco47I	GGWCC	1 cut(s)	505
Eco81I	CCTNAGG	1 cut(s)	180
Eco88I	CYCGRG	1 cut(s)	230
Eco91I	GGTNACC	1 cut(s)	168
EcoO65I	GGTNACC	1 cut(s)	168
EcoRII	CCWGG	2 cut(s)	72, 131
FaeI	CATG	3 cut(s)	448, 601, 963
FatI	CATG	3 cut(s)	444, 597, 959
Fnu4HI	GCNGC	1 cut(s)	950
FokI	GGATG	2 cut(s)	443, 872
Fsp4HI	GCNGC	1 cut(s)	950
FspBI	CTAG	3 cut(s)	242, 576, 588
GlaI	GCGC	2 cut(s)	71, 540
GluI	GCNGC	1 cut(s)	950
HhaI	GCGC	2 cut(s)	72, 541
Hin1II	CATG	3 cut(s)	448, 601, 963
Hin6I	GCGC	2 cut(s)	70, 539
HinP1I	GCGC	2 cut(s)	70, 539
HincII	GTYRAC	1 cut(s)	721
HindII	GTYRAC	1 cut(s)	721
HindIII	AAGCTT	1 cut(s)	294
HinfI	GANTC	3 cut(s)	149, 266, 475
HphI	GGTGA	2 cut(s)	367, 614
Hpy166II	GTNNAC	2 cut(s)	721, 845
Hpy188I	TCNGA	3 cut(s)	407, 480, 493
Hpy188III	TCNNGA	7 cut(s)	179, 230, 232, 242, 308, 344, 960
Hpy8I	GTNNAC	2 cut(s)	721, 845
Hpy99I	CGWCG	1 cut(s)	555
HpyAV	CCTTC	2 cut(s)	185, 394
HpyCH4IV	ACGT	1 cut(s)	717
HpyCH4V	TGCA	6 cut(s)	199, 389, 652, 782, 896, 935
HpyF10VI	GCNNNNNNNGC	2 cut(s)	522, 788
HpyF3I	CTNAG	4 cut(s)	101, 180, 492, 557
HpySE526I	ACGT	1 cut(s)	717
Hsp92II	CATG	3 cut(s)	448, 601, 963
HspAI	GCGC	2 cut(s)	70, 539
Kzo9I	GATC	3 cut(s)	61, 94, 205
LmnI	GCTCC	2 cut(s)	163, 765
Lsp1109I	GCAGC	1 cut(s)	936
LweI	GCATC	2 cut(s)	534, 791
MaeI	CTAG	3 cut(s)	242, 576, 588
MaeII	ACGT	1 cut(s)	717
MaeIII	GTNAC	4 cut(s)	34, 168, 583, 668
MalI	GATC	3 cut(s)	63, 96, 207
MbiI	CCGCTC	1 cut(s)	158
MboI	GATC	3 cut(s)	61, 94, 205
MboII	GAAGA	7 cut(s)	56, 74, 167, 452, 617, 907, 955
MluCI	AATT	3 cut(s)	10, 414, 764
MmeI	TCCRAC	2 cut(s)	408, 862
MnlI	CCTC	9 cut(s)	40, 70, 75, 175, 183, 487, 610, 631, 703
MroXI	GAANNNNTTC	3 cut(s)	48, 351, 753
MseI	TTAA	1 cut(s)	767
MspR9I	CCNGG	2 cut(s)	74, 133
MvaI	CCWGG	2 cut(s)	74, 133
MwoI	GCNNNNNNNGC	2 cut(s)	522, 788
NdeII	GATC	3 cut(s)	61, 94, 205
NlaIII	CATG	3 cut(s)	448, 601, 963
PaeR7I	CTCGAG	1 cut(s)	230
PagI	TCATGA	1 cut(s)	959
PdmI	GAANNNNTTC	3 cut(s)	48, 351, 753
PfeI	GAWTC	3 cut(s)	149, 266, 475
PflFI	GACNNNGTC	1 cut(s)	716
PkrI	GCNGC	1 cut(s)	951
PsiI	TTATAA	2 cut(s)	23, 120
Psp6I	CCWGG	2 cut(s)	72, 131
PspEI	GGTNACC	1 cut(s)	168
PspGI	CCWGG	2 cut(s)	72, 131
PspPI	GGNCC	1 cut(s)	505
PsyI	GACNNNGTC	1 cut(s)	716
RsaI	GTAC	4 cut(s)	256, 396, 687, 846
RsaNI	GTAC	4 cut(s)	255, 395, 686, 845
SaqAI	TTAA	1 cut(s)	767
SatI	GCNGC	1 cut(s)	950
Sau3AI	GATC	3 cut(s)	61, 94, 205
Sau96I	GGNCC	1 cut(s)	505
ScrFI	CCNGG	2 cut(s)	74, 133
SfaNI	GCATC	2 cut(s)	534, 791
SfcI	CTRYAG	2 cut(s)	30, 792
Sfr274I	CTCGAG	1 cut(s)	230
SinI	GGWCC	1 cut(s)	505
SlaI	CTCGAG	1 cut(s)	230
SmlI	CTYRAG	3 cut(s)	230, 284, 635
SmoI	CTYRAG	3 cut(s)	230, 284, 635
Sse9I	AATT	3 cut(s)	10, 414, 764
SsiI	CCGC	1 cut(s)	156
SspI	AATATT	1 cut(s)	822
SspMI	CTAG	3 cut(s)	242, 576, 588
StyD4I	CCNGG	2 cut(s)	72, 131
TaiI	ACGT	1 cut(s)	720
TaqI	TCGA	1 cut(s)	231
TasI	AATT	3 cut(s)	10, 414, 764
TatI	WGTACW	3 cut(s)	254, 394, 844
TfiI	GAWTC	3 cut(s)	149, 266, 475
Tru1I	TTAA	1 cut(s)	767
Tru9I	TTAA	1 cut(s)	767
TscAI	CASTG	1 cut(s)	277
TseI	GCWGC	1 cut(s)	949
TspDTI	ATGAA	6 cut(s)	156, 327, 426, 453, 845, 948
TspGWI	ACGGA	2 cut(s)	497, 539
TspRI	CASTG	1 cut(s)	277
Tth111I	GACNNNGTC	1 cut(s)	716
VpaK11BI	GGWCC	1 cut(s)	505
XbaI	TCTAGA	1 cut(s)	241
XhoI	CTCGAG	1 cut(s)	230
XmnI	GAANNNNTTC	3 cut(s)	48, 351, 753
XspI	CTAG	3 cut(s)	242, 576, 588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.