Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0004630

Physical Location & Seq

Genomic Coordinates Reverse (-)

6629496 .. 6632368

Gene Structure 2873 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00285260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

ATGGGGAAGGGTCCGTTCTCGTTGAAGCGTAGCAGCAGCAGCAGCCGGCGGCAGCGGCCGAAGAAGTTTATCGGCCCTCCACCTTCTCCTTTCCCTTCGCCGCCTCCTCCGCCTGCTCAGCCTCGGCCCATGGGATCCGCCCCCCTCCTCGCCCTTGAACAACAACAGTTTGGCTGTCAAGGCCAAGAAGAAGGCCGGAGGAGGAGCCAGGCTCTGGATGCGATTCGATCGCTGCGGCGGTTCCGAGCTTCCAGGGAGAAGGCCATGGTGGTGAATTTGGAGTTTATCAAGGCTATAGTCACCGCCGAAGAGGTTCTGTTGCTTGATCCTCTTCGGCAGGAGGTTCTTCCATTTGCGGATCAACTAAGGCAACAGCTTCCTCAATCAAGGGTTGATGAACAAGATAATGATGCTTCAACAGCAAGGCAATGGTTACCTGTTCCCGAGGCCGTTGAAGGTTTGCAATGTGATCTCCCATTTGAGTTTCAGGTTCTCGAGATTGCTCTAGAAGTTGTCTGTACGTACTTGGATTCCAGTGTGGCAGACCTTGAGATGGAAGCCTACCCTGTGCTCGATGAACTCGCTAGAAATGTCAGCACCAAGAATCTTGAACTTGTTCGCAGTTTGAAAAGCAACCTCACCCGTTTGCTTGCACGAGTACAGAAGGTGAGGGATGAAATTGAACATTTGTTGGATGACAATGAAGACATGGCACATTTATATTTGACAAGAAAGTGGATTCAGAATCAACAATCTGAGGCCTTGTTGGCACGTTCTGCCTCAAATAGAAGCAGCCCTACTGCACCCAATCTCCGTCGGCTAGGCTCTAATAGAAGCAGTAGTTTGGTAACTAGCAACAACATGGGTGAAGATGATGTAGAGGATCTAGAAATGTTGCTTGAGGCTTATTTTATGCAACTTGATGGAACTCGTAACAAGATATTGTCTGTACGGGAGTATATAGATGACACAGAGGATTATGTCAACATTCAACTTGACAACCAGCGAAACGAACTCATTCAGCTCCAATTAACATTGACTATTGCATCATTTGCTATAGCCGTAGAGACCTTGATTGCTGGAATATTTGGTATGAACATTCCCTGTGTATTATACGATAAGAAGGGGATATTTGAGTTCTTTGTTGGAGGTGTCACTGCATTTTCGGTATTGCTTTTCTTCCTTGTTTTTGGGTATGCAAGGTGGAAGAAGCTGCTTGGTTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0007275 GO:0008150 GO:0008324 GO:0009555 GO:0015075 GO:0015095 GO:0015318 GO:0015693 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0032501 GO:0032502 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1903830

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CorA

Protein Analysis

408

Amino Acids

46.09

Weight (kDa)

5.27

Isoelectric Point (pI)

67.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MRS2-like	PF22099	84 - 250	1.1e-17	Magnesium transporter MRS2-like
CorA	PF01544	199 - 397	1.8e-07	CorA-like Mg2+ transporter protein
MRS2-like	PF22099	284 - 336	3.7e-07	Magnesium transporter MRS2-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004630)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58970
fragaria_vesca	FvH4_5g28740 FvH4_5g28740 FvH4_5g28740 FvH4_5g28740 FvH4_5g28740 FvH4_5g28740
malus_domestica	MD08G1238500.v1.1 MD08G1238700.v1.1 MD15G1430500.v1.1
prunus_persica	Prupe.1G575700_v2.0.a1
pyrus_communis	pycom08g20700 pycom08g20720 pycom15g38020 pycom420g00390 pycom420g00500 pycom420g00530
rosa_chinensis	RchiOBHm_Chr1g0372101 RchiOBHm_Chr6g0246761
rosa_laevigata	RLG00000015250 RLG00000026923
rosa_multiflora	Rmu_sc0001755.1_g000027 Rmu_sc0003131.1_g000033
rosa_roxburghii	Rroxscaffold_4G00285260 Rroxscaffold_7G00214470
rosa_rugosa	Rorug01G0369700
rosa_samantha	Rh1AG378000 Rh1BG341400 Rh1CG354800 Rh1DG372500
rosa_wichuraiana	Rw1G033260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	214
AciI	CCGC	9 cut(s)	49, 55, 101, 110, 138, 235, 238, 303, 356
AclWI	GGATC	5 cut(s)	129, 142, 320, 366, 891
AcoI	YGGCCR	1 cut(s)	56
AcsI	RAATTY	1 cut(s)	274
AfaI	GTAC	4 cut(s)	520, 524, 660, 951
AfiI	CCNNNNNNNGG	2 cut(s)	214, 553
AgsI	TTSAA	8 cut(s)	25, 158, 417, 455, 611, 628, 683, 992
AjnI	CCWGG	2 cut(s)	207, 251
AluBI	AGCT	4 cut(s)	248, 376, 1024, 1213
AluI	AGCT	4 cut(s)	248, 376, 1024, 1213
Alw21I	GWGCWC	1 cut(s)	573
Alw26I	GTCTC	1 cut(s)	1061
AlwI	GGATC	5 cut(s)	129, 142, 320, 366, 891
AlwNI	CAGNNNCTG	1 cut(s)	214
Ama87I	CYCGRG	2 cut(s)	443, 494
AoxI	GGCC	8 cut(s)	56, 73, 125, 181, 193, 261, 447, 759
ApeKI	GCWGC	8 cut(s)	33, 36, 39, 42, 52, 232, 792, 1213
ApoI	RAATTY	1 cut(s)	274
Asp700I	GAANNNNTTC	3 cut(s)	312, 615, 1017
AspS9I	GGNCC	3 cut(s)	11, 74, 126
AsuHPI	GGTGA	5 cut(s)	283, 292, 631, 679, 878
AvaI	CYCGRG	2 cut(s)	443, 494
AvaII	GGWCC	1 cut(s)	11
BamHI	GGATCC	1 cut(s)	134
BarI	GAAGNNNNNNTAC	2 cut(s)	781, 813
BauI	CACGAG	1 cut(s)	654
BbsI	GAAGAC	1 cut(s)	711
Bbv12I	GWGCWC	1 cut(s)	573
BbvI	GCAGC	8 cut(s)	45, 48, 51, 54, 64, 219, 804, 1200
BccI	CCATC	2 cut(s)	547, 917
BceAI	ACGGC	2 cut(s)	434, 1046
BciT130I	CCWGG	2 cut(s)	209, 253
BcoDI	GTCTC	1 cut(s)	1061
BfaI	CTAG	5 cut(s)	506, 585, 821, 852, 887
BfmI	CTRYAG	2 cut(s)	294, 1056
BglI	GCCNNNNNGGC	1 cut(s)	767
BlpI	GCTNAGC	1 cut(s)	117
Bme1390I	CCNGG	2 cut(s)	209, 253
Bme18I	GGWCC	1 cut(s)	11
BmeT110I	CYCGRG	2 cut(s)	443, 494
BmgT120I	GGNCC	3 cut(s)	11, 74, 126
BmiI	GGNNCC	4 cut(s)	12, 136, 206, 242
BmrFI	CCNGG	2 cut(s)	209, 253
BmsI	GCATC	3 cut(s)	208, 400, 1055
BpiI	GAAGAC	1 cut(s)	711
BplI	GAGNNNNNCTC	2 cut(s)	196, 228
Bpu1102I	GCTNAGC	1 cut(s)	117
BpuEI	CTTGAG	2 cut(s)	569, 920
BsaAI	YACGTR	1 cut(s)	522
BsaI	GGTCTC	1 cut(s)	1061
BsaJI	CCNNGG	5 cut(s)	122, 129, 252, 264, 444
BsaXI	ACNNNNNCTCC	2 cut(s)	795, 825
Bsc4I	CCNNNNNNNGG	2 cut(s)	214, 553
Bse118I	RCCGGY	1 cut(s)	45
Bse1I	ACTGG	1 cut(s)	534
Bse3DI	GCAATG	2 cut(s)	434, 470
BseBI	CCWGG	2 cut(s)	209, 253
BseDI	CCNNGG	5 cut(s)	122, 129, 252, 264, 444
BseGI	GGATG	3 cut(s)	223, 679, 700
BseLI	CCNNNNNNNGG	2 cut(s)	214, 553
BseMI	GCAATG	2 cut(s)	434, 470
BseMII	CTCAG	2 cut(s)	131, 747
BseNI	ACTGG	1 cut(s)	534
BseRI	GAGGAG	4 cut(s)	96, 137, 214, 217
BseX3I	CGGCCG	1 cut(s)	56
BseXI	GCAGC	8 cut(s)	45, 48, 51, 54, 64, 219, 804, 1200
BsgI	GTGCAG	1 cut(s)	786
Bsh1285I	CGRYCG	2 cut(s)	59, 230
BshFI	GGCC	8 cut(s)	58, 75, 127, 183, 195, 263, 449, 761
BsiEI	CGRYCG	2 cut(s)	59, 230
BsiHKAI	GWGCWC	1 cut(s)	573
BsiHKCI	CYCGRG	2 cut(s)	443, 494
BsiSI	CCGG	2 cut(s)	46, 196
BslI	CCNNNNNNNGG	2 cut(s)	214, 553
BsmAI	GTCTC	1 cut(s)	1061
BsnI	GGCC	8 cut(s)	58, 75, 127, 183, 195, 263, 449, 761
Bso31I	GGTCTC	1 cut(s)	1061
BsoBI	CYCGRG	2 cut(s)	443, 494
Bsp1286I	GDGCHC	1 cut(s)	573
Bsp143I	GATC	6 cut(s)	134, 227, 325, 358, 469, 883
Bsp1720I	GCTNAGC	1 cut(s)	117
Bsp19I	CCATGG	2 cut(s)	129, 264
BspACI	CCGC	9 cut(s)	49, 55, 101, 110, 138, 235, 238, 303, 356
BspANI	GGCC	8 cut(s)	58, 75, 127, 183, 195, 263, 449, 761
BspCNI	CTCAG	2 cut(s)	130, 748
BspLI	GGNNCC	4 cut(s)	12, 136, 206, 242
BspPI	GGATC	5 cut(s)	129, 142, 320, 366, 891
BspTNI	GGTCTC	1 cut(s)	1061
BsrDI	GCAATG	2 cut(s)	434, 470
BsrFI	RCCGGY	1 cut(s)	45
BsrI	ACTGG	1 cut(s)	534
BssAI	RCCGGY	1 cut(s)	45
BssECI	CCNNGG	5 cut(s)	122, 129, 252, 264, 444
BssMI	GATC	6 cut(s)	134, 227, 325, 358, 469, 883
BssSI	CACGAG	1 cut(s)	654
BssT1I	CCWWGG	2 cut(s)	129, 264
Bst2BI	CACGAG	1 cut(s)	654
Bst2UI	CCWGG	2 cut(s)	209, 253
Bst4CI	ACNGT	1 cut(s)	168
Bst6I	CTCTTC	2 cut(s)	303, 336
BstAPI	GCANNNNNTGC	2 cut(s)	776, 1052
BstBAI	YACGTR	1 cut(s)	522
BstC8I	GCNNGC	3 cut(s)	47, 114, 651
BstDEI	CTNAG	3 cut(s)	117, 365, 756
BstDSI	CCRYGG	2 cut(s)	129, 264
BstEII	GGTNACC	1 cut(s)	432
BstF5I	GGATG	3 cut(s)	223, 679, 700
BstKTI	GATC	6 cut(s)	137, 230, 328, 361, 472, 886
BstMAI	GTCTC	1 cut(s)	1061
BstMBI	GATC	6 cut(s)	134, 227, 325, 358, 469, 883
BstMCI	CGRYCG	2 cut(s)	59, 230
BstNI	CCWGG	2 cut(s)	209, 253
BstPI	GGTNACC	1 cut(s)	432
BstSCI	CCNGG	2 cut(s)	207, 251
BstSFI	CTRYAG	2 cut(s)	294, 1056
BstSNI	TACGTA	1 cut(s)	522
BstV1I	GCAGC	8 cut(s)	45, 48, 51, 54, 64, 219, 804, 1200
BstV2I	GAAGAC	1 cut(s)	711
BstX2I	RGATCY	2 cut(s)	134, 883
BstYI	RGATCY	2 cut(s)	134, 883
BstZI	CGGCCG	1 cut(s)	56
BsuRI	GGCC	8 cut(s)	58, 75, 127, 183, 195, 263, 449, 761
BtgI	CCRYGG	2 cut(s)	129, 264
BtsCI	GGATG	3 cut(s)	223, 679, 700
BtsI	GCAGTG	1 cut(s)	1155
BtsIMutI	CAGTG	2 cut(s)	541, 1155
Cac8I	GCNNGC	3 cut(s)	47, 114, 651
CaiI	CAGNNNCTG	1 cut(s)	214
Cfr10I	RCCGGY	1 cut(s)	45
Cfr13I	GGNCC	3 cut(s)	11, 74, 126
Csp6I	GTAC	4 cut(s)	519, 523, 659, 950
CviAII	CATG	4 cut(s)	130, 265, 709, 862
CviQI	GTAC	4 cut(s)	519, 523, 659, 950
DdeI	CTNAG	3 cut(s)	117, 365, 756
DpnI	GATC	6 cut(s)	136, 229, 327, 360, 471, 885
DpnII	GATC	6 cut(s)	134, 227, 325, 358, 469, 883
EaeI	YGGCCR	1 cut(s)	56
EagI	CGGCCG	1 cut(s)	56
Eam1104I	CTCTTC	2 cut(s)	303, 336
EarI	CTCTTC	2 cut(s)	303, 336
EciI	GGCGGA	2 cut(s)	99, 127
EclXI	CGGCCG	1 cut(s)	56
Eco105I	TACGTA	1 cut(s)	522
Eco130I	CCWWGG	2 cut(s)	129, 264
Eco147I	AGGCCT	1 cut(s)	761
Eco31I	GGTCTC	1 cut(s)	1061
Eco47I	GGWCC	1 cut(s)	11
Eco52I	CGGCCG	1 cut(s)	56
Eco88I	CYCGRG	2 cut(s)	443, 494
Eco91I	GGTNACC	1 cut(s)	432
EcoO65I	GGTNACC	1 cut(s)	432
EcoRII	CCWGG	2 cut(s)	207, 251
EcoT14I	CCWWGG	2 cut(s)	129, 264
ErhI	CCWWGG	2 cut(s)	129, 264
FaeI	CATG	4 cut(s)	133, 268, 712, 865
FatI	CATG	4 cut(s)	129, 264, 708, 861
FokI	GGATG	3 cut(s)	230, 686, 707
FspBI	CTAG	5 cut(s)	506, 585, 821, 852, 887
HaeIII	GGCC	8 cut(s)	58, 75, 127, 183, 195, 263, 449, 761
HapII	CCGG	2 cut(s)	46, 196
Hin1II	CATG	4 cut(s)	133, 268, 712, 865
HincII	GTYRAC	1 cut(s)	985
HindII	GTYRAC	1 cut(s)	985
HinfI	GANTC	5 cut(s)	223, 530, 604, 739, 745
HpaII	CCGG	2 cut(s)	46, 196
HphI	GGTGA	5 cut(s)	283, 292, 631, 679, 878
Hpy166II	GTNNAC	1 cut(s)	985
Hpy188I	TCNGA	3 cut(s)	245, 744, 757
Hpy188III	TCNNGA	8 cut(s)	215, 443, 494, 496, 506, 608, 887, 1224
Hpy8I	GTNNAC	1 cut(s)	985
Hpy99I	CGWCG	1 cut(s)	819
HpyAV	CCTTC	7 cut(s)	93, 105, 185, 253, 449, 658, 1117
HpyCH4III	ACNGT	1 cut(s)	168
HpyCH4IV	ACGT	2 cut(s)	521, 772
HpyCH4V	TGCA	7 cut(s)	463, 653, 803, 916, 1046, 1160, 1199
HpyF3I	CTNAG	3 cut(s)	117, 365, 756
HpySE526I	ACGT	2 cut(s)	521, 772
Hsp92II	CATG	4 cut(s)	133, 268, 712, 865
KroI	GCCGGC	1 cut(s)	45
KroNI	GCCGGC	1 cut(s)	47
Kzo9I	GATC	6 cut(s)	134, 227, 325, 358, 469, 883
LmnI	GCTCC	2 cut(s)	204, 1029
Lsp1109I	GCAGC	8 cut(s)	45, 48, 51, 54, 64, 219, 804, 1200
LweI	GCATC	3 cut(s)	208, 400, 1055
MaeI	CTAG	5 cut(s)	506, 585, 821, 852, 887
MaeII	ACGT	2 cut(s)	521, 772
MaeIII	GTNAC	5 cut(s)	298, 432, 847, 932, 1153
MalI	GATC	6 cut(s)	136, 229, 327, 360, 471, 885
MboI	GATC	6 cut(s)	134, 227, 325, 358, 469, 883
MboII	GAAGA	9 cut(s)	73, 200, 320, 323, 338, 716, 881, 1171, 1219
MflI	RGATCY	2 cut(s)	134, 883
MhlI	GDGCHC	1 cut(s)	573
MluCI	AATT	3 cut(s)	274, 678, 1028
MmeI	TCCRAC	2 cut(s)	672, 1126
MroNI	GCCGGC	1 cut(s)	45
MroXI	GAANNNNTTC	3 cut(s)	312, 615, 1017
MseI	TTAA	1 cut(s)	1031
MslI	CAYNNNNRTG	1 cut(s)	269
MspA1I	CMGCKG	1 cut(s)	55
MspI	CCGG	2 cut(s)	46, 196
MspR9I	CCNGG	2 cut(s)	209, 253
MvaI	CCWGG	2 cut(s)	209, 253
NaeI	GCCGGC	1 cut(s)	47
NcoI	CCATGG	2 cut(s)	129, 264
NdeII	GATC	6 cut(s)	134, 227, 325, 358, 469, 883
NgoMIV	GCCGGC	1 cut(s)	45
NlaIII	CATG	4 cut(s)	133, 268, 712, 865
NlaIV	GGNNCC	4 cut(s)	12, 136, 206, 242
NmeAIII	GCCGAG	1 cut(s)	103
NmuCI	GTSAC	2 cut(s)	298, 1153
PaeR7I	CTCGAG	1 cut(s)	494
PceI	AGGCCT	1 cut(s)	761
PdiI	GCCGGC	1 cut(s)	47
PdmI	GAANNNNTTC	3 cut(s)	312, 615, 1017
PfeI	GAWTC	5 cut(s)	223, 530, 604, 739, 745
PflMI	CCANNNNNTGG	1 cut(s)	214
Ple19I	CGATCG	1 cut(s)	230
Ppu21I	YACGTR	1 cut(s)	522
Psp6I	CCWGG	2 cut(s)	207, 251
PspEI	GGTNACC	1 cut(s)	432
PspGI	CCWGG	2 cut(s)	207, 251
PspN4I	GGNNCC	4 cut(s)	12, 136, 206, 242
PspPI	GGNCC	3 cut(s)	11, 74, 126
PstNI	CAGNNNCTG	1 cut(s)	214
PsuI	RGATCY	2 cut(s)	134, 883
PvuI	CGATCG	1 cut(s)	230
RsaI	GTAC	4 cut(s)	520, 524, 660, 951
RsaNI	GTAC	4 cut(s)	519, 523, 659, 950
RseI	CAYNNNNRTG	1 cut(s)	269
SaqAI	TTAA	1 cut(s)	1031
Sau3AI	GATC	6 cut(s)	134, 227, 325, 358, 469, 883
Sau96I	GGNCC	3 cut(s)	11, 74, 126
ScrFI	CCNGG	2 cut(s)	209, 253
SduI	GDGCHC	1 cut(s)	573
SfaNI	GCATC	3 cut(s)	208, 400, 1055
SfcI	CTRYAG	2 cut(s)	294, 1056
Sfr274I	CTCGAG	1 cut(s)	494
SinI	GGWCC	1 cut(s)	11
SlaI	CTCGAG	1 cut(s)	494
SmiMI	CAYNNNNRTG	1 cut(s)	269
SmlI	CTYRAG	3 cut(s)	494, 548, 899
SmoI	CTYRAG	3 cut(s)	494, 548, 899
SnaBI	TACGTA	1 cut(s)	522
Sse9I	AATT	3 cut(s)	274, 678, 1028
SseBI	AGGCCT	1 cut(s)	761
SsiI	CCGC	9 cut(s)	49, 55, 101, 110, 138, 235, 238, 303, 356
SspI	AATATT	1 cut(s)	1086
SspMI	CTAG	5 cut(s)	506, 585, 821, 852, 887
StuI	AGGCCT	1 cut(s)	761
StyD4I	CCNGG	2 cut(s)	207, 251
StyI	CCWWGG	2 cut(s)	129, 264
TaaI	ACNGT	1 cut(s)	168
TaiI	ACGT	2 cut(s)	524, 775
TaqI	TCGA	3 cut(s)	226, 495, 573
TasI	AATT	3 cut(s)	274, 678, 1028
TatI	WGTACW	1 cut(s)	658
TauI	GCSGC	4 cut(s)	52, 58, 103, 238
TfiI	GAWTC	5 cut(s)	223, 530, 604, 739, 745
Tru1I	TTAA	1 cut(s)	1031
Tru9I	TTAA	1 cut(s)	1031
TscAI	CASTG	2 cut(s)	541, 1162
TseFI	GTSAC	2 cut(s)	298, 1153
TseI	GCWGC	8 cut(s)	33, 36, 39, 42, 52, 232, 792, 1213
Tsp45I	GTSAC	2 cut(s)	298, 1153
TspDTI	ATGAA	5 cut(s)	411, 591, 690, 717, 1109
TspGWI	ACGGA	1 cut(s)	803
TspRI	CASTG	2 cut(s)	541, 1162
Van91I	CCANNNNNTGG	1 cut(s)	214
VpaK11BI	GGWCC	1 cut(s)	11
XapI	RAATTY	1 cut(s)	274
XbaI	TCTAGA	2 cut(s)	505, 886
XhoI	CTCGAG	1 cut(s)	494
XmnI	GAANNNNTTC	3 cut(s)	312, 615, 1017
XspI	CTAG	5 cut(s)	506, 585, 821, 852, 887

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.