Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0004630

Physical Location & Seq

Genomic Coordinates Forward (+)

63590913 .. 63592127

Gene Structure 1215 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015250

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGAGAGATATCCTCACCCTAAAGTCATAATCCTCCTCAGAGAGATTGAGAATGGGGAAGGGTCCTTGGAACTACAGTTTGGCTGTGAATGGCAAGAAGAAGGCATGCGGAGCCAGGCTGTGGATGCGCTGTGGAAGTTTCGAGCTAGTCGAGAGGTTCTCCCATGTCCGAATCAGCTAAGACAACGGCTGCTTTCTCATAAAACCCAATCAGGGCAATGGTTACCTGTTCCAGAGGTCGTTGAAGGTTTGCAATGTGATCTCCCATTTGAGTTTCAGGTTCTGGAGATTGCTCTAGAAGTTGTCTGTACATACTTGGATTCCAGTGTGGCAGACCTTGAGATGGAAGCTTACCCTGTGCTCGATGAACTGGCCAGAAATGTTACCACCAAGAATCTTGAACTTGTTCACAGTTTGAAAAGCACTCTCACCCGTTTGCTTGCACGAGTACAAAATGTGAGGGATAAAATTGAACATTTATTGGATGACAGTGAAGACATGGCACGTATATATTTGACAAGAAAGTGGATTCATAATCAACAATCTGAGGCTTTGTTGGCGCATTCTGGCTCAAATAGCATAAGCCCTACCGCACCCAATCTCGGTCGGCTAAGTTCTAATGCAAGTGCTATGGGTGAAGATGATGTAGAGGATCTAGAAATGTTTCTTGAGGCTTATTTTATGCAACTTGATGGAACTCATAACAAGATATTGTCTATACTGGACTATATAGATGACACAGAAGATCATGTCAACATTCAGCTTAACAACCAGCGAACACAGAGGACTAGGTCAACATTCAAGACGAACTCATTCAGCTCCAATTTAACATTGACCATTGCATCATTTGCTATAGCCGTAGAGACTAGAGACCCTAATTTCTGGAATATTTGGTATGAACATTCCCTGTCTATTACATACGAGAAGAAAGGGAGATTTGAGCTTTTTGTTAGAAGTATTACTGCATTTTCGGTATTGCTTTTCTTCCTTATTTTTGGGTATGCAAGTTGGAAGAAGCTGCTTGGCTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0007275 GO:0008150 GO:0008324 GO:0009555 GO:0015075 GO:0015095 GO:0015318 GO:0015693 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0032501 GO:0032502 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1903830

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CorA

Protein Analysis

344

Amino Acids

39.42

Weight (kDa)

5.1

Isoelectric Point (pI)

43.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MRS2-like	PF22099	87 - 180	1.2e-12	Magnesium transporter MRS2-like
MRS2-like	PF22099	210 - 259	1e-05	Magnesium transporter MRS2-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004630)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58970
fragaria_vesca	FvH4_5g28740 FvH4_5g28740 FvH4_5g28740 FvH4_5g28740 FvH4_5g28740 FvH4_5g28740
malus_domestica	MD08G1238500.v1.1 MD08G1238700.v1.1 MD15G1430500.v1.1
prunus_persica	Prupe.1G575700_v2.0.a1
pyrus_communis	pycom08g20700 pycom08g20720 pycom15g38020 pycom420g00390 pycom420g00500 pycom420g00530
rosa_chinensis	RchiOBHm_Chr1g0372101 RchiOBHm_Chr6g0246761
rosa_laevigata	RLG00000015250 RLG00000026923
rosa_multiflora	Rmu_sc0001755.1_g000027 Rmu_sc0003131.1_g000033
rosa_roxburghii	Rroxscaffold_4G00285260 Rroxscaffold_7G00214470
rosa_rugosa	Rorug01G0369700
rosa_samantha	Rh1AG378000 Rh1BG341400 Rh1CG354800 Rh1DG372500
rosa_wichuraiana	Rw1G033260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	121
AciI	CCGC	2 cut(s)	109, 591
AclWI	GGATC	1 cut(s)	660
AcoI	YGGCCR	1 cut(s)	372
AfaI	GTAC	2 cut(s)	310, 450
AfiI	CCNNNNNNNGG	4 cut(s)	121, 213, 343, 602
AgsI	TTSAA	5 cut(s)	245, 401, 418, 473, 802
AjnI	CCWGG	1 cut(s)	114
AjuI	GAANNNNNNNTTGG	2 cut(s)	63, 95
AluBI	AGCT	7 cut(s)	146, 178, 350, 763, 819, 943, 1018
AluI	AGCT	7 cut(s)	146, 178, 350, 763, 819, 943, 1018
Alw21I	GWGCWC	1 cut(s)	363
Alw26I	GTCTC	2 cut(s)	857, 864
AlwI	GGATC	1 cut(s)	660
AlwNI	CAGNNNCTG	1 cut(s)	283
AoxI	GGCC	1 cut(s)	372
ApeKI	GCWGC	2 cut(s)	190, 1018
Asp700I	GAANNNNTTC	3 cut(s)	405, 663, 812
AspLEI	GCGC	2 cut(s)	130, 562
AspS9I	GGNCC	1 cut(s)	63
AsuHPI	GGTGA	3 cut(s)	8, 421, 647
AvaII	GGWCC	1 cut(s)	63
BalI	TGGCCA	1 cut(s)	374
BauI	CACGAG	1 cut(s)	444
BbsI	GAAGAC	1 cut(s)	501
Bbv12I	GWGCWC	1 cut(s)	363
BbvI	GCAGC	2 cut(s)	177, 1005
BccI	CCATC	2 cut(s)	337, 686
BceAI	ACGGC	2 cut(s)	203, 842
BciT130I	CCWGG	1 cut(s)	116
BcoDI	GTCTC	2 cut(s)	857, 864
BfaI	CTAG	5 cut(s)	147, 296, 656, 789, 867
BfmI	CTRYAG	2 cut(s)	74, 852
BisI	GCNGC	2 cut(s)	191, 1019
BlsI	GCNGC	2 cut(s)	192, 1020
Bme1390I	CCNGG	1 cut(s)	116
Bme18I	GGWCC	1 cut(s)	63
BmgT120I	GGNCC	1 cut(s)	63
BmiI	GGNNCC	2 cut(s)	64, 113
BmrFI	CCNGG	1 cut(s)	116
BmsI	GCATC	2 cut(s)	115, 851
BpiI	GAAGAC	1 cut(s)	501
BplI	GAGNNNNNCTC	3 cut(s)	30, 144, 176
BpmI	CTGGAG	1 cut(s)	305
BpuEI	CTTGAG	2 cut(s)	359, 689
BsaAI	YACGTR	1 cut(s)	506
BsaI	GGTCTC	1 cut(s)	864
BsaJI	CCNNGG	1 cut(s)	66
Bsc4I	CCNNNNNNNGG	4 cut(s)	121, 213, 343, 602
Bse1I	ACTGG	3 cut(s)	324, 375, 726
Bse3DI	GCAATG	3 cut(s)	224, 260, 837
BseBI	CCWGG	1 cut(s)	116
BseDI	CCNNGG	1 cut(s)	66
BseGI	GGATG	2 cut(s)	130, 490
BseLI	CCNNNNNNNGG	4 cut(s)	121, 213, 343, 602
BseMI	GCAATG	3 cut(s)	224, 260, 837
BseMII	CTCAG	2 cut(s)	52, 537
BseNI	ACTGG	3 cut(s)	324, 375, 726
BseRI	GAGGAG	1 cut(s)	26
BseXI	GCAGC	2 cut(s)	177, 1005
Bsh1285I	CGRYCG	1 cut(s)	607
BshFI	GGCC	1 cut(s)	374
BsiEI	CGRYCG	1 cut(s)	607
BsiHKAI	GWGCWC	1 cut(s)	363
BslI	CCNNNNNNNGG	4 cut(s)	121, 213, 343, 602
BsmAI	GTCTC	2 cut(s)	857, 864
BsmI	GAATGC	1 cut(s)	562
BsnI	GGCC	1 cut(s)	374
Bso31I	GGTCTC	1 cut(s)	864
Bsp1286I	GDGCHC	1 cut(s)	363
Bsp1407I	TGTACA	1 cut(s)	308
Bsp143I	GATC	3 cut(s)	259, 652, 745
BspACI	CCGC	2 cut(s)	109, 591
BspANI	GGCC	1 cut(s)	374
BspCNI	CTCAG	2 cut(s)	51, 538
BspLI	GGNNCC	2 cut(s)	64, 113
BspPI	GGATC	1 cut(s)	660
BspTNI	GGTCTC	1 cut(s)	864
BsrDI	GCAATG	3 cut(s)	224, 260, 837
BsrGI	TGTACA	1 cut(s)	308
BsrI	ACTGG	3 cut(s)	324, 375, 726
BssECI	CCNNGG	1 cut(s)	66
BssMI	GATC	3 cut(s)	259, 652, 745
BssSI	CACGAG	1 cut(s)	444
BssT1I	CCWWGG	1 cut(s)	66
Bst2BI	CACGAG	1 cut(s)	444
Bst2UI	CCWGG	1 cut(s)	116
Bst4CI	ACNGT	3 cut(s)	78, 413, 491
BstAPI	GCANNNNNTGC	1 cut(s)	848
BstAUI	TGTACA	1 cut(s)	308
BstBAI	YACGTR	1 cut(s)	506
BstC8I	GCNNGC	2 cut(s)	107, 441
BstDEI	CTNAG	4 cut(s)	38, 179, 546, 611
BstEII	GGTNACC	1 cut(s)	222
BstF5I	GGATG	2 cut(s)	130, 490
BstHHI	GCGC	2 cut(s)	130, 562
BstKTI	GATC	3 cut(s)	262, 655, 748
BstMAI	GTCTC	2 cut(s)	857, 864
BstMBI	GATC	3 cut(s)	259, 652, 745
BstMCI	CGRYCG	1 cut(s)	607
BstMWI	GCNNNNNNNGC	5 cut(s)	111, 125, 557, 576, 848
BstNI	CCWGG	1 cut(s)	116
BstNSI	RCATGY	1 cut(s)	109
BstPI	GGTNACC	1 cut(s)	222
BstSCI	CCNGG	1 cut(s)	114
BstSFI	CTRYAG	2 cut(s)	74, 852
BstV1I	GCAGC	2 cut(s)	177, 1005
BstV2I	GAAGAC	1 cut(s)	501
BstX2I	RGATCY	1 cut(s)	652
BstYI	RGATCY	1 cut(s)	652
BsuRI	GGCC	1 cut(s)	374
BtsCI	GGATG	2 cut(s)	130, 490
BtsIMutI	CAGTG	2 cut(s)	331, 496
Cac8I	GCNNGC	2 cut(s)	107, 441
CaiI	CAGNNNCTG	1 cut(s)	283
CfoI	GCGC	2 cut(s)	130, 562
Cfr13I	GGNCC	1 cut(s)	63
Csp6I	GTAC	2 cut(s)	309, 449
CviAII	CATG	4 cut(s)	106, 165, 499, 749
CviQI	GTAC	2 cut(s)	309, 449
DdeI	CTNAG	4 cut(s)	38, 179, 546, 611
DpnI	GATC	3 cut(s)	261, 654, 747
DpnII	GATC	3 cut(s)	259, 652, 745
EaeI	YGGCCR	1 cut(s)	372
Eco130I	CCWWGG	1 cut(s)	66
Eco31I	GGTCTC	1 cut(s)	864
Eco32I	GATATC	1 cut(s)	11
Eco47I	GGWCC	1 cut(s)	63
Eco91I	GGTNACC	1 cut(s)	222
EcoO109I	RGGNCCY	1 cut(s)	63
EcoO65I	GGTNACC	1 cut(s)	222
EcoRII	CCWGG	1 cut(s)	114
EcoRV	GATATC	1 cut(s)	11
EcoT14I	CCWWGG	1 cut(s)	66
ErhI	CCWWGG	1 cut(s)	66
FaeI	CATG	4 cut(s)	109, 168, 502, 752
FatI	CATG	4 cut(s)	105, 164, 498, 748
Fnu4HI	GCNGC	2 cut(s)	191, 1019
FokI	GGATG	2 cut(s)	137, 497
Fsp4HI	GCNGC	2 cut(s)	191, 1019
FspBI	CTAG	5 cut(s)	147, 296, 656, 789, 867
GlaI	GCGC	2 cut(s)	129, 561
GluI	GCNGC	2 cut(s)	191, 1019
GsuI	CTGGAG	1 cut(s)	305
HaeIII	GGCC	1 cut(s)	374
HhaI	GCGC	2 cut(s)	130, 562
Hin1II	CATG	4 cut(s)	109, 168, 502, 752
Hin6I	GCGC	2 cut(s)	128, 560
HinP1I	GCGC	2 cut(s)	128, 560
HincII	GTYRAC	2 cut(s)	754, 795
HindII	GTYRAC	2 cut(s)	754, 795
HindIII	AAGCTT	1 cut(s)	348
HinfI	GANTC	4 cut(s)	172, 320, 394, 529
HphI	GGTGA	3 cut(s)	8, 421, 647
Hpy166II	GTNNAC	3 cut(s)	409, 754, 795
Hpy188I	TCNGA	3 cut(s)	41, 171, 547
Hpy188III	TCNNGA	9 cut(s)	152, 233, 284, 296, 398, 656, 668, 802, 883
Hpy8I	GTNNAC	3 cut(s)	409, 754, 795
HpyAV	CCTTC	3 cut(s)	53, 95, 239
HpyCH4III	ACNGT	3 cut(s)	78, 413, 491
HpyCH4IV	ACGT	1 cut(s)	505
HpyCH4V	TGCA	7 cut(s)	253, 443, 623, 685, 842, 965, 1004
HpyF10VI	GCNNNNNNNGC	5 cut(s)	111, 125, 557, 576, 848
HpyF3I	CTNAG	4 cut(s)	38, 179, 546, 611
HpySE526I	ACGT	1 cut(s)	505
Hsp92II	CATG	4 cut(s)	109, 168, 502, 752
HspAI	GCGC	2 cut(s)	128, 560
Kzo9I	GATC	3 cut(s)	259, 652, 745
LmnI	GCTCC	2 cut(s)	111, 824
Lsp1109I	GCAGC	2 cut(s)	177, 1005
LweI	GCATC	2 cut(s)	115, 851
MaeI	CTAG	5 cut(s)	147, 296, 656, 789, 867
MaeII	ACGT	1 cut(s)	505
MaeIII	GTNAC	2 cut(s)	222, 382
MalI	GATC	3 cut(s)	261, 654, 747
MboI	GATC	3 cut(s)	259, 652, 745
MboII	GAAGA	7 cut(s)	110, 506, 650, 755, 937, 976, 1024
MflI	RGATCY	1 cut(s)	652
MhlI	GDGCHC	1 cut(s)	363
MlsI	TGGCCA	1 cut(s)	374
MluCI	AATT	3 cut(s)	468, 823, 877
MluNI	TGGCCA	1 cut(s)	374
MmeI	TCCRAC	1 cut(s)	989
Mox20I	TGGCCA	1 cut(s)	374
MroXI	GAANNNNTTC	3 cut(s)	405, 663, 812
MscI	TGGCCA	1 cut(s)	374
MseI	TTAA	2 cut(s)	765, 827
Msp20I	TGGCCA	1 cut(s)	374
MspR9I	CCNGG	1 cut(s)	116
Mva1269I	GAATGC	1 cut(s)	562
MvaI	CCWGG	1 cut(s)	116
MwoI	GCNNNNNNNGC	5 cut(s)	111, 125, 557, 576, 848
NdeII	GATC	3 cut(s)	259, 652, 745
NlaIII	CATG	4 cut(s)	109, 168, 502, 752
NlaIV	GGNNCC	2 cut(s)	64, 113
NspI	RCATGY	1 cut(s)	109
PaeI	GCATGC	1 cut(s)	109
PcsI	WCGNNNNNNNCGW	1 cut(s)	148
PctI	GAATGC	1 cut(s)	562
PdmI	GAANNNNTTC	3 cut(s)	405, 663, 812
PfeI	GAWTC	4 cut(s)	172, 320, 394, 529
PflFI	GACNNNGTC	1 cut(s)	790
PflMI	CCANNNNNTGG	1 cut(s)	121
PkrI	GCNGC	2 cut(s)	192, 1020
Ppu21I	YACGTR	1 cut(s)	506
PpuMI	RGGWCCY	1 cut(s)	63
Psp5II	RGGWCCY	1 cut(s)	63
Psp6I	CCWGG	1 cut(s)	114
PspEI	GGTNACC	1 cut(s)	222
PspGI	CCWGG	1 cut(s)	114
PspN4I	GGNNCC	2 cut(s)	64, 113
PspPI	GGNCC	1 cut(s)	63
PspPPI	RGGWCCY	1 cut(s)	63
PstNI	CAGNNNCTG	1 cut(s)	283
PsuI	RGATCY	1 cut(s)	652
PsyI	GACNNNGTC	1 cut(s)	790
RsaI	GTAC	2 cut(s)	310, 450
RsaNI	GTAC	2 cut(s)	309, 449
SaqAI	TTAA	2 cut(s)	765, 827
SatI	GCNGC	2 cut(s)	191, 1019
Sau3AI	GATC	3 cut(s)	259, 652, 745
Sau96I	GGNCC	1 cut(s)	63
ScrFI	CCNGG	1 cut(s)	116
SduI	GDGCHC	1 cut(s)	363
SfaNI	GCATC	2 cut(s)	115, 851
SfcI	CTRYAG	2 cut(s)	74, 852
SinI	GGWCC	1 cut(s)	63
SmlI	CTYRAG	2 cut(s)	338, 668
SmoI	CTYRAG	2 cut(s)	338, 668
SphI	GCATGC	1 cut(s)	109
Sse9I	AATT	3 cut(s)	468, 823, 877
SsiI	CCGC	2 cut(s)	109, 591
SspI	AATATT	1 cut(s)	889
SspMI	CTAG	5 cut(s)	147, 296, 656, 789, 867
StyD4I	CCNGG	1 cut(s)	114
StyI	CCWWGG	1 cut(s)	66
TaaI	ACNGT	3 cut(s)	78, 413, 491
TaiI	ACGT	1 cut(s)	508
TaqI	TCGA	3 cut(s)	142, 151, 363
TaqII	GACCGA	1 cut(s)	593
TasI	AATT	3 cut(s)	468, 823, 877
TatI	WGTACW	2 cut(s)	308, 448
TfiI	GAWTC	4 cut(s)	172, 320, 394, 529
Tru1I	TTAA	2 cut(s)	765, 827
Tru9I	TTAA	2 cut(s)	765, 827
TscAI	CASTG	2 cut(s)	331, 496
TseI	GCWGC	2 cut(s)	190, 1018
TspDTI	ATGAA	3 cut(s)	381, 521, 912
TspRI	CASTG	2 cut(s)	331, 496
Tth111I	GACNNNGTC	1 cut(s)	790
Van91I	CCANNNNNTGG	1 cut(s)	121
VpaK11BI	GGWCC	1 cut(s)	63
XbaI	TCTAGA	2 cut(s)	295, 655
XceI	RCATGY	1 cut(s)	109
XmnI	GAANNNNTTC	3 cut(s)	405, 663, 812
XspI	CTAG	5 cut(s)	147, 296, 656, 789, 867

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.