Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0004630

Physical Location & Seq

Genomic Coordinates Forward (+)

63000351 .. 63002383

Gene Structure 2033 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG354800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGTGGTGAATTTGGAGTTTATCAAGGCTATAGTTACCGCCGAAGAGGTTCTGTTGCTTGATCCTCTTCGGCAGGAGGTTCTTCCATTTGCGGATCAACTAAGGCAACAGCTTCCTCAATCAAGGGTTGATGAACAAGATAATCAACTGGATGCTTCAACAGCAAGGCAATGGCTACCTGTTCCCGAGGCCGTTGAAGGTTTGCAATGTGATCTCCCATTTGAGTTTCAGGTTCTCGAGATTGCTCTAGAAGTTGTCTGTACGTACTTGGATTCCAGTGTGGCAGACCTTGAGATGGAAGCCTACCCTGTGCTCGATGAACTCGCCAGAAATGTCAGCACCAAGAATCTTGAACTTGTTCGCAGTTTGAAAAGCAATCTCACCCGTTTGCTTGCACGAGTACAGAAGGTGAGGGATGAAATTGAACATTTGTTGGATGACAATGAAGACATGGCACATTTATATTTGACAAGAAAGTGGATTCAGAATCAACAATCTGAGGCCTTGTTGGCACGTTCTGGCTCAAATAGAAGCAGCCCTACTGCACCCAATCTCCGTCGGCTAGGCTCTAATAGAAGCAGTAGTTTGGTAACTAGCAACAACATGGGTGAAGATGATGTAGAGGATCTAGAAATGTTGCTTGAGGCTTATTTTATGCAACTTGATGGAACTCGTAACAAGATATTGTCTGTACGGGAGTATATAGATGACACAGAGGATTATGTCAACATTCAACTTGACAACCAGAGAAACGAACTCATTCAGCTCCAATTAACATTGACCATTGCATCATTTGCTATAGCCATAGAGACCTTGATCGCTGGAATATTTGGTATGAACATTCCCTGTGTATTATACGATAAGAAGGGGATATTTGAGTTCTTTGTTGGAGGTGTCACTGCATTTTCGGTATTGCTTTTCTTCCTTGTTTTTGGGTATGCAAGGTGGAAGAAGCTGCTTGGTTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0007275 GO:0008150 GO:0008324 GO:0009555 GO:0015075 GO:0015095 GO:0015318 GO:0015693 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0032501 GO:0032502 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1903830

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CorA

Protein Analysis

322

Amino Acids

36.6

Weight (kDa)

4.52

Isoelectric Point (pI)

52.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MRS2-like	PF22099	2 - 164	8.3e-16	Magnesium transporter MRS2-like
CorA	PF01544	115 - 311	4.3e-07	CorA-like Mg2+ transporter protein
MRS2-like	PF22099	198 - 250	2.6e-07	Magnesium transporter MRS2-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0004630)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58970
fragaria_vesca	FvH4_5g28740 FvH4_5g28740 FvH4_5g28740 FvH4_5g28740 FvH4_5g28740 FvH4_5g28740
malus_domestica	MD08G1238500.v1.1 MD08G1238700.v1.1 MD15G1430500.v1.1
prunus_persica	Prupe.1G575700_v2.0.a1
pyrus_communis	pycom08g20700 pycom08g20720 pycom15g38020 pycom420g00390 pycom420g00500 pycom420g00530
rosa_chinensis	RchiOBHm_Chr1g0372101 RchiOBHm_Chr6g0246761
rosa_laevigata	RLG00000015250 RLG00000026923
rosa_multiflora	Rmu_sc0001755.1_g000027 Rmu_sc0003131.1_g000033
rosa_roxburghii	Rroxscaffold_4G00285260 Rroxscaffold_7G00214470
rosa_rugosa	Rorug01G0369700
rosa_samantha	Rh1AG378000 Rh1BG341400 Rh1CG354800 Rh1DG372500
rosa_wichuraiana	Rw1G033260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	39, 92
AclWI	GGATC	3 cut(s)	56, 102, 633
AcsI	RAATTY	1 cut(s)	10
AfaI	GTAC	4 cut(s)	262, 266, 402, 693
AfiI	CCNNNNNNNGG	1 cut(s)	295
AgsI	TTSAA	6 cut(s)	159, 197, 353, 370, 425, 734
AluBI	AGCT	3 cut(s)	112, 766, 955
AluI	AGCT	3 cut(s)	112, 766, 955
Alw21I	GWGCWC	1 cut(s)	315
Alw26I	GTCTC	1 cut(s)	803
AlwI	GGATC	3 cut(s)	56, 102, 633
Ama87I	CYCGRG	2 cut(s)	185, 236
AoxI	GGCC	2 cut(s)	189, 501
ApeKI	GCWGC	2 cut(s)	534, 955
ApoI	RAATTY	1 cut(s)	10
Asp700I	GAANNNNTTC	3 cut(s)	48, 357, 759
AsuHPI	GGTGA	4 cut(s)	19, 373, 421, 620
AvaI	CYCGRG	2 cut(s)	185, 236
BarI	GAAGNNNNNNTAC	2 cut(s)	523, 555
BauI	CACGAG	1 cut(s)	396
BbsI	GAAGAC	1 cut(s)	453
Bbv12I	GWGCWC	1 cut(s)	315
BbvI	GCAGC	2 cut(s)	546, 942
BccI	CCATC	2 cut(s)	289, 659
BceAI	ACGGC	1 cut(s)	176
BcoDI	GTCTC	1 cut(s)	803
BfaI	CTAG	4 cut(s)	248, 563, 594, 629
BfmI	CTRYAG	2 cut(s)	30, 798
BglI	GCCNNNNNGGC	1 cut(s)	509
BisI	GCNGC	2 cut(s)	535, 956
BlsI	GCNGC	2 cut(s)	536, 957
BmeT110I	CYCGRG	2 cut(s)	185, 236
BmsI	GCATC	2 cut(s)	142, 797
BpiI	GAAGAC	1 cut(s)	453
BpuEI	CTTGAG	2 cut(s)	311, 662
BsaAI	YACGTR	1 cut(s)	264
BsaI	GGTCTC	1 cut(s)	803
BsaJI	CCNNGG	1 cut(s)	186
BsaXI	ACNNNNNCTCC	2 cut(s)	537, 567
Bsc4I	CCNNNNNNNGG	1 cut(s)	295
Bse1I	ACTGG	2 cut(s)	153, 276
Bse3DI	GCAATG	3 cut(s)	176, 212, 783
BseDI	CCNNGG	1 cut(s)	186
BseGI	GGATG	3 cut(s)	157, 421, 442
BseLI	CCNNNNNNNGG	1 cut(s)	295
BseMI	GCAATG	3 cut(s)	176, 212, 783
BseMII	CTCAG	1 cut(s)	489
BseNI	ACTGG	2 cut(s)	153, 276
BseXI	GCAGC	2 cut(s)	546, 942
BsgI	GTGCAG	1 cut(s)	528
BshFI	GGCC	2 cut(s)	191, 503
BsiHKAI	GWGCWC	1 cut(s)	315
BsiHKCI	CYCGRG	2 cut(s)	185, 236
BslI	CCNNNNNNNGG	1 cut(s)	295
BsmAI	GTCTC	1 cut(s)	803
BsnI	GGCC	2 cut(s)	191, 503
Bso31I	GGTCTC	1 cut(s)	803
BsoBI	CYCGRG	2 cut(s)	185, 236
Bsp1286I	GDGCHC	1 cut(s)	315
Bsp143I	GATC	5 cut(s)	61, 94, 211, 625, 816
BspACI	CCGC	2 cut(s)	39, 92
BspANI	GGCC	2 cut(s)	191, 503
BspCNI	CTCAG	1 cut(s)	490
BspPI	GGATC	3 cut(s)	56, 102, 633
BspTNI	GGTCTC	1 cut(s)	803
BsrDI	GCAATG	3 cut(s)	176, 212, 783
BsrI	ACTGG	2 cut(s)	153, 276
BssECI	CCNNGG	1 cut(s)	186
BssMI	GATC	5 cut(s)	61, 94, 211, 625, 816
BssSI	CACGAG	1 cut(s)	396
Bst2BI	CACGAG	1 cut(s)	396
Bst6I	CTCTTC	2 cut(s)	39, 72
BstAPI	GCANNNNNTGC	1 cut(s)	794
BstBAI	YACGTR	1 cut(s)	264
BstC8I	GCNNGC	1 cut(s)	393
BstDEI	CTNAG	2 cut(s)	101, 498
BstF5I	GGATG	3 cut(s)	157, 421, 442
BstKTI	GATC	5 cut(s)	64, 97, 214, 628, 819
BstMAI	GTCTC	1 cut(s)	803
BstMBI	GATC	5 cut(s)	61, 94, 211, 625, 816
BstMWI	GCNNNNNNNGC	3 cut(s)	161, 509, 794
BstSFI	CTRYAG	2 cut(s)	30, 798
BstSNI	TACGTA	1 cut(s)	264
BstV1I	GCAGC	2 cut(s)	546, 942
BstV2I	GAAGAC	1 cut(s)	453
BstX2I	RGATCY	1 cut(s)	625
BstYI	RGATCY	1 cut(s)	625
BsuRI	GGCC	2 cut(s)	191, 503
BtsCI	GGATG	3 cut(s)	157, 421, 442
BtsI	GCAGTG	1 cut(s)	897
BtsIMutI	CAGTG	2 cut(s)	283, 897
Cac8I	GCNNGC	1 cut(s)	393
Csp6I	GTAC	4 cut(s)	261, 265, 401, 692
CviAII	CATG	2 cut(s)	451, 604
CviQI	GTAC	4 cut(s)	261, 265, 401, 692
DdeI	CTNAG	2 cut(s)	101, 498
DpnI	GATC	5 cut(s)	63, 96, 213, 627, 818
DpnII	GATC	5 cut(s)	61, 94, 211, 625, 816
Eam1104I	CTCTTC	2 cut(s)	39, 72
EarI	CTCTTC	2 cut(s)	39, 72
Eco105I	TACGTA	1 cut(s)	264
Eco147I	AGGCCT	1 cut(s)	503
Eco31I	GGTCTC	1 cut(s)	803
Eco88I	CYCGRG	2 cut(s)	185, 236
FaeI	CATG	2 cut(s)	454, 607
FatI	CATG	2 cut(s)	450, 603
Fnu4HI	GCNGC	2 cut(s)	535, 956
FokI	GGATG	3 cut(s)	164, 428, 449
Fsp4HI	GCNGC	2 cut(s)	535, 956
FspBI	CTAG	4 cut(s)	248, 563, 594, 629
GluI	GCNGC	2 cut(s)	535, 956
HaeIII	GGCC	2 cut(s)	191, 503
Hin1II	CATG	2 cut(s)	454, 607
HincII	GTYRAC	1 cut(s)	727
HindII	GTYRAC	1 cut(s)	727
HinfI	GANTC	4 cut(s)	272, 346, 481, 487
HphI	GGTGA	4 cut(s)	19, 373, 421, 620
Hpy166II	GTNNAC	1 cut(s)	727
Hpy188I	TCNGA	2 cut(s)	486, 499
Hpy188III	TCNNGA	7 cut(s)	185, 236, 238, 248, 350, 629, 966
Hpy8I	GTNNAC	1 cut(s)	727
Hpy99I	CGWCG	1 cut(s)	561
HpyAV	CCTTC	3 cut(s)	191, 400, 859
HpyCH4IV	ACGT	2 cut(s)	263, 514
HpyCH4V	TGCA	7 cut(s)	205, 395, 545, 658, 788, 902, 941
HpyF10VI	GCNNNNNNNGC	3 cut(s)	161, 509, 794
HpyF3I	CTNAG	2 cut(s)	101, 498
HpySE526I	ACGT	2 cut(s)	263, 514
Hsp92II	CATG	2 cut(s)	454, 607
Kzo9I	GATC	5 cut(s)	61, 94, 211, 625, 816
LmnI	GCTCC	1 cut(s)	771
Lsp1109I	GCAGC	2 cut(s)	546, 942
LweI	GCATC	2 cut(s)	142, 797
MaeI	CTAG	4 cut(s)	248, 563, 594, 629
MaeII	ACGT	2 cut(s)	263, 514
MaeIII	GTNAC	4 cut(s)	34, 589, 674, 895
MalI	GATC	5 cut(s)	63, 96, 213, 627, 818
MboI	GATC	5 cut(s)	61, 94, 211, 625, 816
MboII	GAAGA	7 cut(s)	56, 59, 74, 458, 623, 913, 961
MflI	RGATCY	1 cut(s)	625
MhlI	GDGCHC	1 cut(s)	315
MluCI	AATT	3 cut(s)	10, 420, 770
MmeI	TCCRAC	2 cut(s)	414, 868
MroXI	GAANNNNTTC	3 cut(s)	48, 357, 759
MseI	TTAA	1 cut(s)	773
MwoI	GCNNNNNNNGC	3 cut(s)	161, 509, 794
NdeII	GATC	5 cut(s)	61, 94, 211, 625, 816
NlaIII	CATG	2 cut(s)	454, 607
NmuCI	GTSAC	1 cut(s)	895
PaeR7I	CTCGAG	1 cut(s)	236
PceI	AGGCCT	1 cut(s)	503
PdmI	GAANNNNTTC	3 cut(s)	48, 357, 759
PfeI	GAWTC	4 cut(s)	272, 346, 481, 487
PkrI	GCNGC	2 cut(s)	536, 957
Ppu21I	YACGTR	1 cut(s)	264
PsuI	RGATCY	1 cut(s)	625
RsaI	GTAC	4 cut(s)	262, 266, 402, 693
RsaNI	GTAC	4 cut(s)	261, 265, 401, 692
SaqAI	TTAA	1 cut(s)	773
SatI	GCNGC	2 cut(s)	535, 956
Sau3AI	GATC	5 cut(s)	61, 94, 211, 625, 816
SduI	GDGCHC	1 cut(s)	315
SfaNI	GCATC	2 cut(s)	142, 797
SfcI	CTRYAG	2 cut(s)	30, 798
Sfr274I	CTCGAG	1 cut(s)	236
SlaI	CTCGAG	1 cut(s)	236
SmlI	CTYRAG	3 cut(s)	236, 290, 641
SmoI	CTYRAG	3 cut(s)	236, 290, 641
SnaBI	TACGTA	1 cut(s)	264
Sse9I	AATT	3 cut(s)	10, 420, 770
SseBI	AGGCCT	1 cut(s)	503
SsiI	CCGC	2 cut(s)	39, 92
SspI	AATATT	1 cut(s)	828
SspMI	CTAG	4 cut(s)	248, 563, 594, 629
StuI	AGGCCT	1 cut(s)	503
TaiI	ACGT	2 cut(s)	266, 517
TaqI	TCGA	2 cut(s)	237, 315
TasI	AATT	3 cut(s)	10, 420, 770
TatI	WGTACW	1 cut(s)	400
TfiI	GAWTC	4 cut(s)	272, 346, 481, 487
Tru1I	TTAA	1 cut(s)	773
Tru9I	TTAA	1 cut(s)	773
TscAI	CASTG	2 cut(s)	283, 904
TseFI	GTSAC	1 cut(s)	895
TseI	GCWGC	2 cut(s)	534, 955
Tsp45I	GTSAC	1 cut(s)	895
TspDTI	ATGAA	5 cut(s)	147, 333, 432, 459, 851
TspGWI	ACGGA	1 cut(s)	545
TspRI	CASTG	2 cut(s)	283, 904
XapI	RAATTY	1 cut(s)	10
XbaI	TCTAGA	2 cut(s)	247, 628
XhoI	CTCGAG	1 cut(s)	236
XmnI	GAANNNNTTC	3 cut(s)	48, 357, 759
XspI	CTAG	4 cut(s)	248, 563, 594, 629

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.