Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003131.1

Orthogroup ID

OG0004630

Physical Location & Seq

Genomic Coordinates Reverse (-)

148803 .. 151279

Gene Structure 2477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003131.1_g000033.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

atgaggcctaactctgaccgcccagcgctcaatttgtacgttcgtcgaactgaagctcactggtcatcctcttatcatcatcagctcaatccgtcaaggatcggtccgtcggggatcaatccgtcaaggatcggaacgtcaagcatgaagcgtcaagcgcaacgcatgcacaccagcagacccgctaaatgcagcaagccaagtcttgcacctgcacaccagccttcttcgtcgaaactcctctccttgacgcagctctccttaacgctcaattctctccttgacgcaactccccagctcatcagctcttcatcaccacacctcgaacagcgaacattcatgacgcagcgaacacctgctggggccgtcgaccatcgtcagcgcaaactccttgccatccatcgtcaagcaccaccaccacgatacaggctaacgcggtccgtcattccgggtccgggtcatgccttactatcatatactttgggcacccgtgtatcttttctgaacacccaacttgtcctttcagagcgcccaacaaattgctccgggcactcggaggttctcccatttccggatcagctaagacaacagctgctttctcataaaacccaatcagggcaatggttacctgttccagaggtcgttgaagtgttgctcgatgaactggccagaaatgttaccaccaagaatcttgaactagttcacagtttgaaaagcactctcacccgtttgcttgcactagtacaaaaggtgagggatgaaattgaacatttattggatgacaatgaagacatggcacgtttatgtttgacaagaaagtggattcagaatcaacaatctgaggctttgttggcgcgttctggctcaaattgcatcagccccactgccccggttggctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0007275 GO:0008150 GO:0008324 GO:0009555 GO:0015075 GO:0015095 GO:0015318 GO:0015693 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0032501 GO:0032502 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1903830

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CorA

Protein Analysis

299

Amino Acids

33.36

Weight (kDa)

10.34

Isoelectric Point (pI)

53.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004630)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58970
fragaria_vesca	FvH4_5g28740 FvH4_5g28740 FvH4_5g28740 FvH4_5g28740 FvH4_5g28740 FvH4_5g28740
malus_domestica	MD08G1238500.v1.1 MD08G1238700.v1.1 MD15G1430500.v1.1
prunus_persica	Prupe.1G575700_v2.0.a1
pyrus_communis	pycom08g20700 pycom08g20720 pycom15g38020 pycom420g00390 pycom420g00500 pycom420g00530
rosa_chinensis	RchiOBHm_Chr1g0372101 RchiOBHm_Chr6g0246761
rosa_laevigata	RLG00000015250 RLG00000026923
rosa_multiflora	Rmu_sc0001755.1_g000027 Rmu_sc0003131.1_g000033
rosa_roxburghii	Rroxscaffold_4G00285260 Rroxscaffold_7G00214470
rosa_rugosa	Rorug01G0369700
rosa_samantha	Rh1AG378000 Rh1BG341400 Rh1CG354800 Rh1DG372500
rosa_wichuraiana	Rw1G033260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	220, 364
Acc36I	ACCTGC	2 cut(s)	220, 364
AccB1I	GGYRCC	1 cut(s)	485
AccI	GTMKAC	1 cut(s)	369
AccII	CGCG	2 cut(s)	436, 856
AccIII	TCCGGA	1 cut(s)	571
AciI	CCGC	3 cut(s)	19, 183, 436
AclWI	GGATC	4 cut(s)	107, 122, 137, 582
AcoI	YGGCCR	1 cut(s)	666
AcuI	CTGAAG	1 cut(s)	72
AfaI	GTAC	2 cut(s)	38, 744
AfeI	AGCGCT	1 cut(s)	27
AfiI	CCNNNNNNNGG	3 cut(s)	455, 571, 615
AgsI	TTSAA	4 cut(s)	647, 695, 712, 767
AhlI	ACTAGT	2 cut(s)	697, 739
AluBI	AGCT	7 cut(s)	56, 85, 256, 298, 306, 580, 592
AluI	AGCT	7 cut(s)	56, 85, 256, 298, 306, 580, 592
AlwI	GGATC	4 cut(s)	107, 122, 137, 582
Aor13HI	TCCGGA	1 cut(s)	571
Aor51HI	AGCGCT	1 cut(s)	27
AoxI	GGCC	3 cut(s)	5, 363, 666
ApeKI	GCWGC	4 cut(s)	192, 253, 346, 592
Asp700I	GAANNNNTTC	1 cut(s)	699
AspLEI	GCGC	5 cut(s)	28, 160, 384, 531, 856
AspS9I	GGNCC	4 cut(s)	104, 363, 438, 452
AsuC2I	CCSGG	4 cut(s)	450, 456, 547, 890
AsuHPI	GGTGA	3 cut(s)	306, 715, 763
AvaII	GGWCC	3 cut(s)	104, 438, 452
BaeGI	GKGCMC	2 cut(s)	488, 552
BaeI	ACNNNNGTAYC	2 cut(s)	477, 510
BalI	TGGCCA	1 cut(s)	668
BanI	GGYRCC	1 cut(s)	485
BbsI	GAAGAC	1 cut(s)	795
BbvI	GCAGC	4 cut(s)	204, 265, 358, 579
BccI	CCATC	3 cut(s)	381, 404, 408
BceAI	ACGGC	1 cut(s)	350
BcnI	CCSGG	4 cut(s)	450, 456, 547, 890
BcuI	ACTAGT	2 cut(s)	697, 739
BfaI	CTAG	2 cut(s)	698, 740
BfoI	RGCGCY	2 cut(s)	29, 532
BfuAI	ACCTGC	2 cut(s)	220, 364
BisI	GCNGC	4 cut(s)	193, 254, 347, 593
BlsI	GCNGC	4 cut(s)	194, 255, 348, 594
Bme1390I	CCNGG	4 cut(s)	450, 456, 547, 890
Bme18I	GGWCC	3 cut(s)	104, 438, 452
BmgT120I	GGNCC	4 cut(s)	104, 363, 438, 452
BmiI	GGNNCC	3 cut(s)	364, 453, 487
BmrFI	CCNGG	4 cut(s)	450, 456, 547, 890
BmsI	GCATC	1 cut(s)	882
BoxI	GACNNNNGTC	1 cut(s)	375
BpiI	GAAGAC	1 cut(s)	795
BpuMI	CCSGG	4 cut(s)	450, 456, 547, 890
BsaJI	CCNNGG	1 cut(s)	888
BsaWI	WCCGGW	1 cut(s)	571
Bsc4I	CCNNNNNNNGG	3 cut(s)	455, 571, 615
Bse1I	ACTGG	2 cut(s)	65, 669
Bse3DI	GCAATG	1 cut(s)	626
BseAI	TCCGGA	1 cut(s)	571
BseDI	CCNNGG	1 cut(s)	888
BseGI	GGATG	4 cut(s)	65, 396, 763, 784
BseLI	CCNNNNNNNGG	3 cut(s)	455, 571, 615
BseMI	GCAATG	1 cut(s)	626
BseMII	CTCAG	1 cut(s)	831
BseNI	ACTGG	2 cut(s)	65, 669
BseRI	GAGGAG	1 cut(s)	230
BseSI	GKGCMC	2 cut(s)	488, 552
BseXI	GCAGC	4 cut(s)	204, 265, 358, 579
BseYI	CCCAGC	3 cut(s)	22, 294, 359
BsgI	GTGCAG	1 cut(s)	198
Bsh1236I	CGCG	2 cut(s)	436, 856
BshFI	GGCC	3 cut(s)	7, 365, 668
BshNI	GGYRCC	1 cut(s)	485
BsiSI	CCGG	5 cut(s)	449, 455, 546, 572, 890
BslI	CCNNNNNNNGG	3 cut(s)	455, 571, 615
BsnI	GGCC	3 cut(s)	7, 365, 668
Bsp1286I	GDGCHC	2 cut(s)	488, 552
Bsp13I	TCCGGA	1 cut(s)	571
Bsp143I	GATC	4 cut(s)	99, 114, 129, 574
BspACI	CCGC	3 cut(s)	19, 183, 436
BspANI	GGCC	3 cut(s)	7, 365, 668
BspCNI	CTCAG	1 cut(s)	832
BspEI	TCCGGA	1 cut(s)	571
BspFNI	CGCG	2 cut(s)	436, 856
BspHI	TCATGA	1 cut(s)	339
BspLI	GGNNCC	3 cut(s)	364, 453, 487
BspMI	ACCTGC	2 cut(s)	220, 364
BspPI	GGATC	4 cut(s)	107, 122, 137, 582
BspQI	GCTCTTC	1 cut(s)	313
BspT107I	GGYRCC	1 cut(s)	485
BsrDI	GCAATG	1 cut(s)	626
BsrI	ACTGG	2 cut(s)	65, 669
BssECI	CCNNGG	1 cut(s)	888
BssMI	GATC	4 cut(s)	99, 114, 129, 574
Bst4CI	ACNGT	1 cut(s)	707
Bst6I	CTCTTC	1 cut(s)	313
BstAPI	GCANNNNNTGC	1 cut(s)	166
BstC8I	GCNNGC	3 cut(s)	167, 197, 735
BstDEI	CTNAG	2 cut(s)	581, 840
BstEII	GGTNACC	1 cut(s)	624
BstF5I	GGATG	4 cut(s)	65, 396, 763, 784
BstFNI	CGCG	2 cut(s)	436, 856
BstH2I	RGCGCY	2 cut(s)	29, 532
BstHHI	GCGC	5 cut(s)	28, 160, 384, 531, 856
BstKTI	GATC	4 cut(s)	102, 117, 132, 577
BstMBI	GATC	4 cut(s)	99, 114, 129, 574
BstMWI	GCNNNNNNNGC	4 cut(s)	157, 166, 851, 870
BstNSI	RCATGY	1 cut(s)	169
BstPAI	GACNNNNGTC	1 cut(s)	375
BstPI	GGTNACC	1 cut(s)	624
BstSCI	CCNGG	4 cut(s)	448, 454, 545, 888
BstSLI	GKGCMC	2 cut(s)	488, 552
BstUI	CGCG	2 cut(s)	436, 856
BstV1I	GCAGC	4 cut(s)	204, 265, 358, 579
BstV2I	GAAGAC	1 cut(s)	795
BsuRI	GGCC	3 cut(s)	7, 365, 668
BtsCI	GGATG	4 cut(s)	65, 396, 763, 784
BtsI	GCAGTG	1 cut(s)	882
BtsIMutI	CAGTG	2 cut(s)	58, 882
BveI	ACCTGC	2 cut(s)	220, 364
Cac8I	GCNNGC	3 cut(s)	167, 197, 735
CciI	TCATGA	1 cut(s)	339
CfoI	GCGC	5 cut(s)	28, 160, 384, 531, 856
Cfr13I	GGNCC	4 cut(s)	104, 363, 438, 452
CpoI	CGGWCCG	2 cut(s)	104, 438
CseI	GACGC	4 cut(s)	140, 259, 293, 352
Csp6I	GTAC	2 cut(s)	37, 743
CspI	CGGWCCG	2 cut(s)	104, 438
CviAII	CATG	5 cut(s)	145, 166, 340, 461, 793
CviQI	GTAC	2 cut(s)	37, 743
DdeI	CTNAG	2 cut(s)	581, 840
DpnI	GATC	4 cut(s)	101, 116, 131, 576
DpnII	GATC	4 cut(s)	99, 114, 129, 574
EaeI	YGGCCR	1 cut(s)	666
Eam1104I	CTCTTC	1 cut(s)	313
EarI	CTCTTC	1 cut(s)	313
Eco147I	AGGCCT	1 cut(s)	7
Eco47I	GGWCC	3 cut(s)	104, 438, 452
Eco47III	AGCGCT	1 cut(s)	27
Eco57I	CTGAAG	1 cut(s)	72
Eco91I	GGTNACC	1 cut(s)	624
EcoO65I	GGTNACC	1 cut(s)	624
FaeI	CATG	5 cut(s)	148, 169, 343, 464, 796
FaiI	YATR	9 cut(s)	146, 167, 341, 462, 475, 477, 603, 794, 805
FatI	CATG	5 cut(s)	144, 165, 339, 460, 792
FauI	CCCGC	1 cut(s)	190
FblI	GTMKAC	1 cut(s)	369
Fnu4HI	GCNGC	4 cut(s)	193, 254, 347, 593
FokI	GGATG	4 cut(s)	52, 383, 770, 791
Fsp4HI	GCNGC	4 cut(s)	193, 254, 347, 593
FspBI	CTAG	2 cut(s)	698, 740
GlaI	GCGC	5 cut(s)	27, 159, 383, 530, 855
GluI	GCNGC	4 cut(s)	193, 254, 347, 593
GsaI	CCCAGC	3 cut(s)	26, 298, 363
HaeII	RGCGCY	2 cut(s)	29, 532
HaeIII	GGCC	3 cut(s)	7, 365, 668
HapII	CCGG	5 cut(s)	449, 455, 546, 572, 890
HgaI	GACGC	4 cut(s)	140, 259, 293, 352
HhaI	GCGC	5 cut(s)	28, 160, 384, 531, 856
Hin1II	CATG	5 cut(s)	148, 169, 343, 464, 796
Hin6I	GCGC	5 cut(s)	26, 158, 382, 529, 854
HinP1I	GCGC	5 cut(s)	26, 158, 382, 529, 854
HincII	GTYRAC	1 cut(s)	370
HindII	GTYRAC	1 cut(s)	370
HinfI	GANTC	3 cut(s)	688, 823, 829
HpaII	CCGG	5 cut(s)	449, 455, 546, 572, 890
HphI	GGTGA	3 cut(s)	306, 715, 763
Hpy166II	GTNNAC	2 cut(s)	370, 703
Hpy188I	TCNGA	7 cut(s)	16, 134, 504, 526, 556, 828, 841
Hpy188III	TCNNGA	4 cut(s)	340, 572, 635, 692
Hpy8I	GTNNAC	2 cut(s)	370, 703
Hpy99I	CGWCG	4 cut(s)	48, 112, 235, 371
HpyAV	CCTTC	1 cut(s)	234
HpyCH4III	ACNGT	1 cut(s)	707
HpyCH4IV	ACGT	3 cut(s)	39, 137, 799
HpyCH4V	TGCA	6 cut(s)	169, 192, 209, 215, 737, 873
HpyF10VI	GCNNNNNNNGC	4 cut(s)	157, 166, 851, 870
HpyF3I	CTNAG	2 cut(s)	581, 840
HpySE526I	ACGT	3 cut(s)	39, 137, 799
Hsp92II	CATG	5 cut(s)	148, 169, 343, 464, 796
HspAI	GCGC	5 cut(s)	26, 158, 382, 529, 854
Kpn2I	TCCGGA	1 cut(s)	571
Kzo9I	GATC	4 cut(s)	99, 114, 129, 574
LguI	GCTCTTC	1 cut(s)	313
LmnI	GCTCC	1 cut(s)	548
Lsp1109I	GCAGC	4 cut(s)	204, 265, 358, 579
LweI	GCATC	1 cut(s)	882
MaeI	CTAG	2 cut(s)	698, 740
MaeII	ACGT	3 cut(s)	39, 137, 799
MaeIII	GTNAC	2 cut(s)	624, 676
MalI	GATC	4 cut(s)	101, 116, 131, 576
MboI	GATC	4 cut(s)	99, 114, 129, 574
MboII	GAAGA	3 cut(s)	219, 300, 800
MhlI	GDGCHC	2 cut(s)	488, 552
MlsI	TGGCCA	1 cut(s)	668
MluCI	AATT	5 cut(s)	31, 271, 538, 762, 868
MluNI	TGGCCA	1 cut(s)	668
MnlI	CCTC	7 cut(s)	79, 251, 332, 550, 631, 747, 835
Mox20I	TGGCCA	1 cut(s)	668
MroI	TCCGGA	1 cut(s)	571
MroXI	GAANNNNTTC	1 cut(s)	699
MscI	TGGCCA	1 cut(s)	668
MseI	TTAA	1 cut(s)	263
MslI	CAYNNNNRTG	1 cut(s)	802
Msp20I	TGGCCA	1 cut(s)	668
MspA1I	CMGCKG	1 cut(s)	592
MspI	CCGG	5 cut(s)	449, 455, 546, 572, 890
MspR9I	CCNGG	4 cut(s)	450, 456, 547, 890
MvnI	CGCG	2 cut(s)	436, 856
MwoI	GCNNNNNNNGC	4 cut(s)	157, 166, 851, 870
NciI	CCSGG	4 cut(s)	450, 456, 547, 890
NdeII	GATC	4 cut(s)	99, 114, 129, 574
NlaIII	CATG	5 cut(s)	148, 169, 343, 464, 796
NlaIV	GGNNCC	3 cut(s)	364, 453, 487
NspI	RCATGY	1 cut(s)	169
PaeI	GCATGC	1 cut(s)	169
PagI	TCATGA	1 cut(s)	339
PaqCI	CACCTGC	2 cut(s)	220, 364
PceI	AGGCCT	1 cut(s)	7
PciSI	GCTCTTC	1 cut(s)	313
PdmI	GAANNNNTTC	1 cut(s)	699
PfeI	GAWTC	3 cut(s)	688, 823, 829
PkrI	GCNGC	4 cut(s)	194, 255, 348, 594
PshAI	GACNNNNGTC	1 cut(s)	375
PspEI	GGTNACC	1 cut(s)	624
PspFI	CCCAGC	3 cut(s)	22, 294, 359
PspN4I	GGNNCC	3 cut(s)	364, 453, 487
PspPI	GGNCC	4 cut(s)	104, 363, 438, 452
PvuII	CAGCTG	1 cut(s)	592
RsaI	GTAC	2 cut(s)	38, 744
RsaNI	GTAC	2 cut(s)	37, 743
RseI	CAYNNNNRTG	1 cut(s)	802
Rsr2I	CGGWCCG	2 cut(s)	104, 438
RsrII	CGGWCCG	2 cut(s)	104, 438
SalI	GTCGAC	1 cut(s)	368
SapI	GCTCTTC	1 cut(s)	313
SaqAI	TTAA	1 cut(s)	263
SatI	GCNGC	4 cut(s)	193, 254, 347, 593
Sau3AI	GATC	4 cut(s)	99, 114, 129, 574
Sau96I	GGNCC	4 cut(s)	104, 363, 438, 452
ScrFI	CCNGG	4 cut(s)	450, 456, 547, 890
SduI	GDGCHC	2 cut(s)	488, 552
SfaNI	GCATC	1 cut(s)	882
SinI	GGWCC	3 cut(s)	104, 438, 452
SmiMI	CAYNNNNRTG	1 cut(s)	802
SpeI	ACTAGT	2 cut(s)	697, 739
SphI	GCATGC	1 cut(s)	169
Sse9I	AATT	5 cut(s)	31, 271, 538, 762, 868
SseBI	AGGCCT	1 cut(s)	7
SsiI	CCGC	3 cut(s)	19, 183, 436
SspMI	CTAG	2 cut(s)	698, 740
StuI	AGGCCT	1 cut(s)	7
StyD4I	CCNGG	4 cut(s)	448, 454, 545, 888
TaaI	ACNGT	1 cut(s)	707
TaiI	ACGT	3 cut(s)	42, 140, 802
TaqI	TCGA	5 cut(s)	46, 233, 324, 369, 657
TaqII	GACCGA	1 cut(s)	92
TasI	AATT	5 cut(s)	31, 271, 538, 762, 868
TatI	WGTACW	1 cut(s)	742
TfiI	GAWTC	3 cut(s)	688, 823, 829
Tru1I	TTAA	1 cut(s)	263
Tru9I	TTAA	1 cut(s)	263
TscAI	CASTG	2 cut(s)	65, 889
TseI	GCWGC	4 cut(s)	192, 253, 346, 592
TspDTI	ATGAA	6 cut(s)	161, 300, 328, 675, 774, 801
TspGWI	ACGGA	4 cut(s)	81, 96, 111, 430
TspRI	CASTG	2 cut(s)	65, 889
VpaK11BI	GGWCC	3 cut(s)	104, 438, 452
XceI	RCATGY	1 cut(s)	169
XmiI	GTMKAC	1 cut(s)	369
XmnI	GAANNNNTTC	1 cut(s)	699
XspI	CTAG	2 cut(s)	698, 740

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.