Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0004630

Physical Location & Seq

Genomic Coordinates Forward (+)

20389061 .. 20391666

Gene Structure 2606 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g20700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGATGCTTCAACCGGAAGGCAATGGTTACCTGTTCCCGAGGCCGTTGAAGGATTGCAGTGTGATCTCCCATTTGAGTTTCAGGTTCTGGAGGTTGCATTAGAAGTTGTCTGTACATACTTGGATTCTAGTGTGGCAGAACTTGAGAGAGAAGCCTACCCTGTGTTAGATGAACTGGCCAGAAATGTTAGCACCAAAAACCTTGAACTTGTGAGGAGTTTGAAAAGCAATCTTACCCGTTTGCTTGCTCGTGTCCAGAAGGTGAGAGATGAAATCGAACATTTGTTGGATGACAATGAAGATATGGCACATTTATATTTAACAAGGAAATGGATGCAGAATCAACAGCCCGAGGCTTTGCTAGGGCGTTCTGCATCAAATAGAATCTCTGCACCCCATCTTCGTTGGCTTGGTTCTAACAGAAGTGGGAGTTTGGTAACCAGTAACAATATGGACTACGATGATGTAGAAGATCTAGAGATGCTGCTTGAGGCATATTTTATGCAGCTGGACGGAACCCGTAACAAGATATTATCTGTGCGGGAGTATATTGATGACACGGAGGATTATGTCAACATACAACTTGACAACCAACGAAACGAACTCATTCAGCTCCAGTTGACATTGACCATTGCATCATTTGCGATAGCGGTGGAGACCTTGATATCTGGGATATTTGGTATGAACATCCACTGTATCTTATACGACAAGGATGGGATATTTGAGGCCTTTGTTGGGGGTATCACAGCATTTTCCGTGTTACTCTTCTTTCTCATCTTCGGGTATGCGAGGTGGAAGAAGCTGCTTGGTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0007275 GO:0008150 GO:0008324 GO:0009555 GO:0015075 GO:0015095 GO:0015318 GO:0015693 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0032501 GO:0032502 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1903830

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CorA

Protein Analysis

272

Amino Acids

30.93

Weight (kDa)

4.61

Isoelectric Point (pI)

45.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004630)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58970
fragaria_vesca	FvH4_5g28740 FvH4_5g28740 FvH4_5g28740 FvH4_5g28740 FvH4_5g28740 FvH4_5g28740
malus_domestica	MD08G1238500.v1.1 MD08G1238700.v1.1 MD15G1430500.v1.1
prunus_persica	Prupe.1G575700_v2.0.a1
pyrus_communis	pycom08g20700 pycom08g20720 pycom15g38020 pycom420g00390 pycom420g00500 pycom420g00530
rosa_chinensis	RchiOBHm_Chr1g0372101 RchiOBHm_Chr6g0246761
rosa_laevigata	RLG00000015250 RLG00000026923
rosa_multiflora	Rmu_sc0001755.1_g000027 Rmu_sc0003131.1_g000033
rosa_roxburghii	Rroxscaffold_4G00285260 Rroxscaffold_7G00214470
rosa_rugosa	Rorug01G0369700
rosa_samantha	Rh1AG378000 Rh1BG341400 Rh1CG354800 Rh1DG372500
rosa_wichuraiana	Rw1G033260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	541, 650
AcoI	YGGCCR	1 cut(s)	177
AfaI	GTAC	2 cut(s)	115, 811
AfiI	CCNNNNNNNGG	1 cut(s)	735
AgsI	TTSAA	4 cut(s)	12, 50, 206, 223
AluBI	AGCT	3 cut(s)	508, 613, 802
AluI	AGCT	3 cut(s)	508, 613, 802
Alw26I	GTCTC	1 cut(s)	650
AlwNI	CAGNNNCTG	1 cut(s)	88
Ama87I	CYCGRG	2 cut(s)	38, 350
AoxI	GGCC	3 cut(s)	42, 177, 726
ApeKI	GCWGC	3 cut(s)	484, 505, 802
Asp700I	GAANNNNTTC	1 cut(s)	606
AsuHPI	GGTGA	1 cut(s)	274
AvaI	CYCGRG	2 cut(s)	38, 350
BalI	TGGCCA	1 cut(s)	179
BauI	CACGAG	1 cut(s)	249
BbvI	GCAGC	3 cut(s)	471, 517, 789
BccI	CCATC	2 cut(s)	405, 707
BceAI	ACGGC	1 cut(s)	29
BcoDI	GTCTC	1 cut(s)	650
BfaI	CTAG	3 cut(s)	129, 362, 476
BglII	AGATCT	1 cut(s)	472
BisI	GCNGC	3 cut(s)	485, 506, 803
BlsI	GCNGC	3 cut(s)	486, 507, 804
BmeT110I	CYCGRG	2 cut(s)	38, 350
BmiI	GGNNCC	1 cut(s)	517
BmsI	GCATC	4 cut(s)	324, 383, 471, 644
BpmI	CTGGAG	2 cut(s)	110, 599
BpuEI	CTTGAG	2 cut(s)	164, 509
BsaI	GGTCTC	1 cut(s)	650
BsaJI	CCNNGG	2 cut(s)	39, 351
BsaWI	WCCGGW	1 cut(s)	14
Bsc4I	CCNNNNNNNGG	1 cut(s)	735
Bse1I	ACTGG	3 cut(s)	180, 441, 616
Bse3DI	GCAATG	2 cut(s)	29, 630
BseDI	CCNNGG	2 cut(s)	39, 351
BseGI	GGATG	5 cut(s)	10, 295, 339, 687, 718
BseLI	CCNNNNNNNGG	1 cut(s)	735
BseMI	GCAATG	2 cut(s)	29, 630
BseNI	ACTGG	3 cut(s)	180, 441, 616
BseRI	GAGGAG	1 cut(s)	229
BseXI	GCAGC	3 cut(s)	471, 517, 789
BsgI	GTGCAG	1 cut(s)	375
BshFI	GGCC	3 cut(s)	44, 179, 728
BsiHKCI	CYCGRG	2 cut(s)	38, 350
BsiSI	CCGG	1 cut(s)	15
BslI	CCNNNNNNNGG	1 cut(s)	735
BsmAI	GTCTC	1 cut(s)	650
BsnI	GGCC	3 cut(s)	44, 179, 728
Bso31I	GGTCTC	1 cut(s)	650
BsoBI	CYCGRG	2 cut(s)	38, 350
Bsp1407I	TGTACA	1 cut(s)	113
Bsp143I	GATC	2 cut(s)	64, 472
BspACI	CCGC	2 cut(s)	541, 650
BspANI	GGCC	3 cut(s)	44, 179, 728
BspLI	GGNNCC	1 cut(s)	517
BspTNI	GGTCTC	1 cut(s)	650
BsrDI	GCAATG	2 cut(s)	29, 630
BsrGI	TGTACA	1 cut(s)	113
BsrI	ACTGG	3 cut(s)	180, 441, 616
BssECI	CCNNGG	2 cut(s)	39, 351
BssMI	GATC	2 cut(s)	64, 472
BssSI	CACGAG	1 cut(s)	249
Bst2BI	CACGAG	1 cut(s)	249
Bst4CI	ACNGT	1 cut(s)	695
Bst6I	CTCTTC	1 cut(s)	770
BstAPI	GCANNNNNTGC	1 cut(s)	641
BstAUI	TGTACA	1 cut(s)	113
BstC8I	GCNNGC	1 cut(s)	246
BstEII	GGTNACC	2 cut(s)	27, 436
BstF5I	GGATG	5 cut(s)	10, 295, 339, 687, 718
BstKTI	GATC	2 cut(s)	67, 475
BstMAI	GTCTC	1 cut(s)	650
BstMBI	GATC	2 cut(s)	64, 472
BstMWI	GCNNNNNNNGC	1 cut(s)	641
BstPI	GGTNACC	2 cut(s)	27, 436
BstV1I	GCAGC	3 cut(s)	471, 517, 789
BstX2I	RGATCY	1 cut(s)	472
BstYI	RGATCY	1 cut(s)	472
BsuRI	GGCC	3 cut(s)	44, 179, 728
BtsCI	GGATG	5 cut(s)	10, 295, 339, 687, 718
BtsI	GCAGTG	1 cut(s)	65
BtsIMutI	CAGTG	2 cut(s)	65, 691
Cac8I	GCNNGC	1 cut(s)	246
CaiI	CAGNNNCTG	1 cut(s)	88
Csp6I	GTAC	2 cut(s)	114, 810
CviAII	CATG	1 cut(s)	813
CviQI	GTAC	2 cut(s)	114, 810
DpnI	GATC	2 cut(s)	66, 474
DpnII	GATC	2 cut(s)	64, 472
EaeI	YGGCCR	1 cut(s)	177
Eam1104I	CTCTTC	1 cut(s)	770
EarI	CTCTTC	1 cut(s)	770
Eco147I	AGGCCT	1 cut(s)	728
Eco31I	GGTCTC	1 cut(s)	650
Eco32I	GATATC	1 cut(s)	666
Eco88I	CYCGRG	2 cut(s)	38, 350
Eco91I	GGTNACC	2 cut(s)	27, 436
EcoO65I	GGTNACC	2 cut(s)	27, 436
EcoRV	GATATC	1 cut(s)	666
FaeI	CATG	1 cut(s)	816
FatI	CATG	1 cut(s)	812
FauI	CCCGC	1 cut(s)	534
Fnu4HI	GCNGC	3 cut(s)	485, 506, 803
FokI	GGATG	5 cut(s)	17, 302, 346, 674, 725
Fsp4HI	GCNGC	3 cut(s)	485, 506, 803
FspBI	CTAG	3 cut(s)	129, 362, 476
GluI	GCNGC	3 cut(s)	485, 506, 803
GsuI	CTGGAG	2 cut(s)	110, 599
HaeIII	GGCC	3 cut(s)	44, 179, 728
HapII	CCGG	1 cut(s)	15
Hin1II	CATG	1 cut(s)	816
HincII	GTYRAC	2 cut(s)	574, 621
HindII	GTYRAC	2 cut(s)	574, 621
HinfI	GANTC	3 cut(s)	125, 340, 384
HpaII	CCGG	1 cut(s)	15
HphI	GGTGA	1 cut(s)	274
Hpy166II	GTNNAC	2 cut(s)	574, 621
Hpy188III	TCNNGA	4 cut(s)	38, 89, 256, 476
Hpy8I	GTNNAC	2 cut(s)	574, 621
HpyAV	CCTTC	3 cut(s)	12, 44, 253
HpyCH4III	ACNGT	1 cut(s)	695
HpyCH4V	TGCA	7 cut(s)	58, 98, 337, 374, 392, 505, 635
HpyF10VI	GCNNNNNNNGC	1 cut(s)	641
Hsp92II	CATG	1 cut(s)	816
Kzo9I	GATC	2 cut(s)	64, 472
LmnI	GCTCC	1 cut(s)	618
Lsp1109I	GCAGC	3 cut(s)	471, 517, 789
LweI	GCATC	4 cut(s)	324, 383, 471, 644
MaeI	CTAG	3 cut(s)	129, 362, 476
MaeIII	GTNAC	5 cut(s)	27, 436, 443, 521, 759
MalI	GATC	2 cut(s)	66, 474
MboI	GATC	2 cut(s)	64, 472
MboII	GAAGA	6 cut(s)	311, 392, 482, 757, 769, 808
MflI	RGATCY	1 cut(s)	472
MlsI	TGGCCA	1 cut(s)	179
MluNI	TGGCCA	1 cut(s)	179
MmeI	TCCRAC	1 cut(s)	267
MnlI	CCTC	8 cut(s)	34, 85, 207, 346, 484, 556, 718, 783
Mox20I	TGGCCA	1 cut(s)	179
MroXI	GAANNNNTTC	1 cut(s)	606
MscI	TGGCCA	1 cut(s)	179
MseI	TTAA	1 cut(s)	320
Msp20I	TGGCCA	1 cut(s)	179
MspA1I	CMGCKG	1 cut(s)	508
MspI	CCGG	1 cut(s)	15
MwoI	GCNNNNNNNGC	1 cut(s)	641
NdeII	GATC	2 cut(s)	64, 472
NlaIII	CATG	1 cut(s)	816
NlaIV	GGNNCC	1 cut(s)	517
PceI	AGGCCT	1 cut(s)	728
PdmI	GAANNNNTTC	1 cut(s)	606
PfeI	GAWTC	3 cut(s)	125, 340, 384
PkrI	GCNGC	3 cut(s)	486, 507, 804
PspEI	GGTNACC	2 cut(s)	27, 436
PspN4I	GGNNCC	1 cut(s)	517
PstNI	CAGNNNCTG	1 cut(s)	88
PsuI	RGATCY	1 cut(s)	472
PvuII	CAGCTG	1 cut(s)	508
RsaI	GTAC	2 cut(s)	115, 811
RsaNI	GTAC	2 cut(s)	114, 810
SaqAI	TTAA	1 cut(s)	320
SatI	GCNGC	3 cut(s)	485, 506, 803
Sau3AI	GATC	2 cut(s)	64, 472
SfaNI	GCATC	4 cut(s)	324, 383, 471, 644
SmlI	CTYRAG	2 cut(s)	143, 488
SmoI	CTYRAG	2 cut(s)	143, 488
SseBI	AGGCCT	1 cut(s)	728
SsiI	CCGC	2 cut(s)	541, 650
SspMI	CTAG	3 cut(s)	129, 362, 476
StuI	AGGCCT	1 cut(s)	728
TaaI	ACNGT	1 cut(s)	695
TaqI	TCGA	1 cut(s)	276
TatI	WGTACW	1 cut(s)	113
TfiI	GAWTC	3 cut(s)	125, 340, 384
Tru1I	TTAA	1 cut(s)	320
Tru9I	TTAA	1 cut(s)	320
TscAI	CASTG	2 cut(s)	65, 698
TseI	GCWGC	3 cut(s)	484, 505, 802
TspDTI	ATGAA	4 cut(s)	186, 285, 312, 698
TspGWI	ACGGA	3 cut(s)	528, 575, 745
TspRI	CASTG	2 cut(s)	65, 698
XbaI	TCTAGA	1 cut(s)	475
XcmI	CCANNNNNNNNNTGG	1 cut(s)	448
XmnI	GAANNNNTTC	1 cut(s)	606
XspI	CTAG	3 cut(s)	129, 362, 476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.