Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001755.1

Orthogroup ID

OG0004630

Physical Location & Seq

Genomic Coordinates Reverse (-)

120988 .. 123458

Gene Structure 2471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001755.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1320 bp

atggggaaaggtccgttctcgttgaagcgtagcagcagcagccggcggcagaggccgaagaagtttatcggccctccaccctctcctttcccttcgccgcctcctccgcctcggcccatgggatccgccccctcctcgcccctgaacaacaacagtttggctgtcaaggccaagaagaaggccggcggaggagccaggctctggatgcgattcgatcgctgcggcggttccgagctcgtcgagtgtgacaagaatgctattatccgacgcgccgccattccccctcgtgacttgagaattctcggccccgttttctcccattcctccagcatcctcgccagggagaaggccatggtggtgaatttggagtttatcaaggctatagttaccgccgaagaggttctgttgcttgatcctcttcggcaggaggttcttccatttgcggatcaactaaggcaacagcttcctcaatcaagggttgatgaacaggataatcaactggatgcttcaacagcaaggcaatggctacctgttcccgaggccgttgaaggtttgcaatgtgatctcccatttgagtttcaggttctcgagattgctctagaagttgtctgtacgtacttggattccagtgtggcagaccttgagatggaagcctaccctgtgctcgatgaactcgccagaaatgtcagcaccaagaatcttgaacttgttcgcagtttgaaaagcaatctcacccgtttgcttgcacgagtacagaaggtgagggatgaaattgaacatttgttggatgacaatgaagacatggcacatttatatttgacaagaaagtggattcagaatcaacaatctgatgccttgttggcacgttctggctcaaatagaagcagccctactgcacccaatctccgtcggctaggctctaatagaagcagtagtttggtaactagcaacaacatgggtgaagatgatgtagaggatctagaaatgttgcttgaggcttattttatgcaacttgatggaactcgtaacaagatattgtctgtacgggagtatatagatgacacagaggattatgtcaacattcaacttgacaaccagagaaacgaactcattcagctccaattaacattgaccattgcatcatttgctatagccgtagagaccttgatcgctggaatatttggtatgaacattccctgtgtattatacgataagaaggggatatttgagttatttgttggaggtgtcactgcattttcggtattgcttttcttccttgtttttgggtatgcaaggtggaagaagctgcttggttcgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0007275 GO:0008150 GO:0008324 GO:0009555 GO:0015075 GO:0015095 GO:0015318 GO:0015693 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0032501 GO:0032502 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1903830

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CorA

Protein Analysis

439

Amino Acids

49.13

Weight (kDa)

5.88

Isoelectric Point (pI)

61.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004630)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58970
fragaria_vesca	FvH4_5g28740 FvH4_5g28740 FvH4_5g28740 FvH4_5g28740 FvH4_5g28740 FvH4_5g28740
malus_domestica	MD08G1238500.v1.1 MD08G1238700.v1.1 MD15G1430500.v1.1
prunus_persica	Prupe.1G575700_v2.0.a1
pyrus_communis	pycom08g20700 pycom08g20720 pycom15g38020 pycom420g00390 pycom420g00500 pycom420g00530
rosa_chinensis	RchiOBHm_Chr1g0372101 RchiOBHm_Chr6g0246761
rosa_laevigata	RLG00000015250 RLG00000026923
rosa_multiflora	Rmu_sc0001755.1_g000027 Rmu_sc0003131.1_g000033
rosa_roxburghii	Rroxscaffold_4G00285260 Rroxscaffold_7G00214470
rosa_rugosa	Rorug01G0369700
rosa_samantha	Rh1AG378000 Rh1BG341400 Rh1CG354800 Rh1DG372500
rosa_wichuraiana	Rw1G033260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	201
AccII	CGCG	1 cut(s)	270
AclWI	GGATC	5 cut(s)	117, 130, 407, 453, 984
AcsI	RAATTY	2 cut(s)	297, 361
AfaI	GTAC	4 cut(s)	613, 617, 753, 1044
AfiI	CCNNNNNNNGG	3 cut(s)	201, 340, 646
AgsI	TTSAA	7 cut(s)	25, 510, 548, 704, 721, 776, 1085
AjnI	CCWGG	2 cut(s)	194, 338
AluBI	AGCT	4 cut(s)	235, 463, 1117, 1306
AluI	AGCT	4 cut(s)	235, 463, 1117, 1306
Alw21I	GWGCWC	2 cut(s)	237, 666
Alw26I	GTCTC	1 cut(s)	1154
AlwI	GGATC	5 cut(s)	117, 130, 407, 453, 984
AlwNI	CAGNNNCTG	1 cut(s)	201
Ama87I	CYCGRG	2 cut(s)	536, 587
AoxI	GGCC	8 cut(s)	53, 70, 113, 168, 180, 304, 348, 540
ApeKI	GCWGC	6 cut(s)	33, 36, 39, 219, 885, 1306
ApoI	RAATTY	2 cut(s)	297, 361
Asp700I	GAANNNNTTC	3 cut(s)	399, 708, 1110
AspLEI	GCGC	1 cut(s)	272
AspS9I	GGNCC	4 cut(s)	11, 71, 114, 305
AsuHPI	GGTGA	4 cut(s)	370, 724, 772, 971
AvaI	CYCGRG	2 cut(s)	536, 587
AvaII	GGWCC	1 cut(s)	11
BamHI	GGATCC	1 cut(s)	122
BanII	GRGCYC	1 cut(s)	237
BarI	GAAGNNNNNNTAC	2 cut(s)	874, 906
BauI	CACGAG	2 cut(s)	285, 747
BbsI	GAAGAC	1 cut(s)	804
Bbv12I	GWGCWC	2 cut(s)	237, 666
BbvI	GCAGC	6 cut(s)	45, 48, 51, 206, 897, 1293
BccI	CCATC	2 cut(s)	640, 1010
BceAI	ACGGC	2 cut(s)	527, 1139
BciT130I	CCWGG	2 cut(s)	196, 340
BcoDI	GTCTC	1 cut(s)	1154
BfaI	CTAG	4 cut(s)	599, 914, 945, 980
BfmI	CTRYAG	2 cut(s)	381, 1149
BglI	GCCNNNNNGGC	1 cut(s)	860
Bme1390I	CCNGG	2 cut(s)	196, 340
Bme18I	GGWCC	1 cut(s)	11
BmeT110I	CYCGRG	2 cut(s)	536, 587
BmgT120I	GGNCC	4 cut(s)	11, 71, 114, 305
BmiI	GGNNCC	4 cut(s)	124, 193, 229, 307
BmrFI	CCNGG	2 cut(s)	196, 340
BmsI	GCATC	5 cut(s)	195, 339, 493, 841, 1148
BpiI	GAAGAC	1 cut(s)	804
BplI	GAGNNNNNCTC	2 cut(s)	183, 215
BpmI	CTGGAG	1 cut(s)	310
BpuEI	CTTGAG	3 cut(s)	313, 662, 1013
BsaAI	YACGTR	1 cut(s)	615
BsaI	GGTCTC	1 cut(s)	1154
BsaJI	CCNNGG	5 cut(s)	110, 117, 339, 351, 537
BsaXI	ACNNNNNCTCC	2 cut(s)	888, 918
Bsc4I	CCNNNNNNNGG	3 cut(s)	201, 340, 646
Bse118I	RCCGGY	2 cut(s)	42, 182
Bse1I	ACTGG	2 cut(s)	504, 627
Bse3DI	GCAATG	3 cut(s)	527, 563, 1134
BseBI	CCWGG	2 cut(s)	196, 340
BseDI	CCNNGG	5 cut(s)	110, 117, 339, 351, 537
BseGI	GGATG	5 cut(s)	210, 330, 508, 772, 793
BseLI	CCNNNNNNNGG	3 cut(s)	201, 340, 646
BseMI	GCAATG	3 cut(s)	527, 563, 1134
BseNI	ACTGG	2 cut(s)	504, 627
BseRI	GAGGAG	3 cut(s)	93, 124, 204
BseXI	GCAGC	6 cut(s)	45, 48, 51, 206, 897, 1293
BsgI	GTGCAG	1 cut(s)	879
Bsh1236I	CGCG	1 cut(s)	270
Bsh1285I	CGRYCG	1 cut(s)	217
BshFI	GGCC	8 cut(s)	55, 72, 115, 170, 182, 306, 350, 542
BsiEI	CGRYCG	1 cut(s)	217
BsiHKAI	GWGCWC	2 cut(s)	237, 666
BsiHKCI	CYCGRG	2 cut(s)	536, 587
BsiSI	CCGG	2 cut(s)	43, 183
BslI	CCNNNNNNNGG	3 cut(s)	201, 340, 646
BsmAI	GTCTC	1 cut(s)	1154
BsmI	GAATGC	1 cut(s)	259
BsnI	GGCC	8 cut(s)	55, 72, 115, 170, 182, 306, 350, 542
Bso31I	GGTCTC	1 cut(s)	1154
BsoBI	CYCGRG	2 cut(s)	536, 587
Bsp1286I	GDGCHC	2 cut(s)	237, 666
Bsp143I	GATC	7 cut(s)	122, 214, 412, 445, 562, 976, 1167
Bsp19I	CCATGG	2 cut(s)	117, 351
BspANI	GGCC	8 cut(s)	55, 72, 115, 170, 182, 306, 350, 542
BspFNI	CGCG	1 cut(s)	270
BspLI	GGNNCC	4 cut(s)	124, 193, 229, 307
BspPI	GGATC	5 cut(s)	117, 130, 407, 453, 984
BspTNI	GGTCTC	1 cut(s)	1154
BsrDI	GCAATG	3 cut(s)	527, 563, 1134
BsrFI	RCCGGY	2 cut(s)	42, 182
BsrI	ACTGG	2 cut(s)	504, 627
BssAI	RCCGGY	2 cut(s)	42, 182
BssECI	CCNNGG	5 cut(s)	110, 117, 339, 351, 537
BssMI	GATC	7 cut(s)	122, 214, 412, 445, 562, 976, 1167
BssSI	CACGAG	2 cut(s)	285, 747
BssT1I	CCWWGG	2 cut(s)	117, 351
Bst2BI	CACGAG	2 cut(s)	285, 747
Bst2UI	CCWGG	2 cut(s)	196, 340
Bst4CI	ACNGT	1 cut(s)	155
Bst6I	CTCTTC	2 cut(s)	390, 423
BstAPI	GCANNNNNTGC	1 cut(s)	1145
BstBAI	YACGTR	1 cut(s)	615
BstC8I	GCNNGC	3 cut(s)	44, 184, 744
BstDEI	CTNAG	1 cut(s)	452
BstDSI	CCRYGG	2 cut(s)	117, 351
BstF5I	GGATG	5 cut(s)	210, 330, 508, 772, 793
BstFNI	CGCG	1 cut(s)	270
BstHHI	GCGC	1 cut(s)	272
BstKTI	GATC	7 cut(s)	125, 217, 415, 448, 565, 979, 1170
BstMAI	GTCTC	1 cut(s)	1154
BstMBI	GATC	7 cut(s)	122, 214, 412, 445, 562, 976, 1167
BstMCI	CGRYCG	1 cut(s)	217
BstMWI	GCNNNNNNNGC	8 cut(s)	39, 52, 106, 167, 205, 512, 860, 1145
BstNI	CCWGG	2 cut(s)	196, 340
BstSCI	CCNGG	2 cut(s)	194, 338
BstSFI	CTRYAG	2 cut(s)	381, 1149
BstSNI	TACGTA	1 cut(s)	615
BstUI	CGCG	1 cut(s)	270
BstV1I	GCAGC	6 cut(s)	45, 48, 51, 206, 897, 1293
BstV2I	GAAGAC	1 cut(s)	804
BstX2I	RGATCY	2 cut(s)	122, 976
BstYI	RGATCY	2 cut(s)	122, 976
BsuRI	GGCC	8 cut(s)	55, 72, 115, 170, 182, 306, 350, 542
BtgI	CCRYGG	2 cut(s)	117, 351
BtsCI	GGATG	5 cut(s)	210, 330, 508, 772, 793
BtsI	GCAGTG	1 cut(s)	1248
BtsIMutI	CAGTG	2 cut(s)	634, 1248
Cac8I	GCNNGC	3 cut(s)	44, 184, 744
CaiI	CAGNNNCTG	1 cut(s)	201
CfoI	GCGC	1 cut(s)	272
Cfr10I	RCCGGY	2 cut(s)	42, 182
Cfr13I	GGNCC	4 cut(s)	11, 71, 114, 305
CseI	GACGC	1 cut(s)	276
Csp6I	GTAC	4 cut(s)	612, 616, 752, 1043
CviAII	CATG	4 cut(s)	118, 352, 802, 955
CviQI	GTAC	4 cut(s)	612, 616, 752, 1043
DdeI	CTNAG	1 cut(s)	452
DpnI	GATC	7 cut(s)	124, 216, 414, 447, 564, 978, 1169
DpnII	GATC	7 cut(s)	122, 214, 412, 445, 562, 976, 1167
Eam1104I	CTCTTC	2 cut(s)	390, 423
EarI	CTCTTC	2 cut(s)	390, 423
EciI	GGCGGA	3 cut(s)	96, 115, 201
Ecl136II	GAGCTC	1 cut(s)	235
Eco105I	TACGTA	1 cut(s)	615
Eco130I	CCWWGG	2 cut(s)	117, 351
Eco24I	GRGCYC	1 cut(s)	237
Eco31I	GGTCTC	1 cut(s)	1154
Eco47I	GGWCC	1 cut(s)	11
Eco53kI	GAGCTC	1 cut(s)	235
Eco88I	CYCGRG	2 cut(s)	536, 587
EcoICRI	GAGCTC	1 cut(s)	235
EcoRI	GAATTC	1 cut(s)	297
EcoRII	CCWGG	2 cut(s)	194, 338
EcoT14I	CCWWGG	2 cut(s)	117, 351
EcoT38I	GRGCYC	1 cut(s)	237
ErhI	CCWWGG	2 cut(s)	117, 351
FaeI	CATG	4 cut(s)	121, 355, 805, 958
FatI	CATG	4 cut(s)	117, 351, 801, 954
FokI	GGATG	5 cut(s)	217, 317, 515, 779, 800
FriOI	GRGCYC	1 cut(s)	237
FspBI	CTAG	4 cut(s)	599, 914, 945, 980
GlaI	GCGC	1 cut(s)	271
GsuI	CTGGAG	1 cut(s)	310
HaeIII	GGCC	8 cut(s)	55, 72, 115, 170, 182, 306, 350, 542
HapII	CCGG	2 cut(s)	43, 183
HgaI	GACGC	1 cut(s)	276
HhaI	GCGC	1 cut(s)	272
Hin1II	CATG	4 cut(s)	121, 355, 805, 958
Hin6I	GCGC	1 cut(s)	270
HinP1I	GCGC	1 cut(s)	270
HincII	GTYRAC	1 cut(s)	1078
HindII	GTYRAC	1 cut(s)	1078
HinfI	GANTC	5 cut(s)	210, 623, 697, 832, 838
HpaII	CCGG	2 cut(s)	43, 183
HphI	GGTGA	4 cut(s)	370, 724, 772, 971
Hpy166II	GTNNAC	1 cut(s)	1078
Hpy188I	TCNGA	4 cut(s)	232, 266, 837, 850
Hpy188III	TCNNGA	9 cut(s)	202, 287, 536, 587, 589, 599, 701, 980, 1317
Hpy8I	GTNNAC	1 cut(s)	1078
Hpy99I	CGWCG	3 cut(s)	242, 270, 912
HpyAV	CCTTC	6 cut(s)	102, 172, 340, 542, 751, 1210
HpyCH4III	ACNGT	1 cut(s)	155
HpyCH4IV	ACGT	2 cut(s)	614, 865
HpyCH4V	TGCA	7 cut(s)	556, 746, 896, 1009, 1139, 1253, 1292
HpyF10VI	GCNNNNNNNGC	8 cut(s)	39, 52, 106, 167, 205, 512, 860, 1145
HpyF3I	CTNAG	1 cut(s)	452
HpySE526I	ACGT	2 cut(s)	614, 865
Hsp92II	CATG	4 cut(s)	121, 355, 805, 958
HspAI	GCGC	1 cut(s)	270
KroI	GCCGGC	2 cut(s)	42, 182
KroNI	GCCGGC	2 cut(s)	44, 184
Kzo9I	GATC	7 cut(s)	122, 214, 412, 445, 562, 976, 1167
LmnI	GCTCC	2 cut(s)	191, 1122
Lsp1109I	GCAGC	6 cut(s)	45, 48, 51, 206, 897, 1293
LweI	GCATC	5 cut(s)	195, 339, 493, 841, 1148
MaeI	CTAG	4 cut(s)	599, 914, 945, 980
MaeII	ACGT	2 cut(s)	614, 865
MaeIII	GTNAC	6 cut(s)	245, 287, 385, 940, 1025, 1246
MalI	GATC	7 cut(s)	124, 216, 414, 447, 564, 978, 1169
MboI	GATC	7 cut(s)	122, 214, 412, 445, 562, 976, 1167
MboII	GAAGA	9 cut(s)	70, 187, 407, 410, 425, 809, 974, 1264, 1312
MflI	RGATCY	2 cut(s)	122, 976
MhlI	GDGCHC	2 cut(s)	237, 666
MluCI	AATT	4 cut(s)	297, 361, 771, 1121
MmeI	TCCRAC	3 cut(s)	289, 765, 1219
MroNI	GCCGGC	2 cut(s)	42, 182
MroXI	GAANNNNTTC	3 cut(s)	399, 708, 1110
MseI	TTAA	1 cut(s)	1124
MslI	CAYNNNNRTG	1 cut(s)	356
MspI	CCGG	2 cut(s)	43, 183
MspR9I	CCNGG	2 cut(s)	196, 340
Mva1269I	GAATGC	1 cut(s)	259
MvaI	CCWGG	2 cut(s)	196, 340
MvnI	CGCG	1 cut(s)	270
MwoI	GCNNNNNNNGC	8 cut(s)	39, 52, 106, 167, 205, 512, 860, 1145
NaeI	GCCGGC	2 cut(s)	44, 184
NcoI	CCATGG	2 cut(s)	117, 351
NdeII	GATC	7 cut(s)	122, 214, 412, 445, 562, 976, 1167
NgoMIV	GCCGGC	2 cut(s)	42, 182
NlaIII	CATG	4 cut(s)	121, 355, 805, 958
NlaIV	GGNNCC	4 cut(s)	124, 193, 229, 307
NmeAIII	GCCGAG	2 cut(s)	91, 282
NmuCI	GTSAC	3 cut(s)	245, 287, 1246
PaeR7I	CTCGAG	1 cut(s)	587
PctI	GAATGC	1 cut(s)	259
PdiI	GCCGGC	2 cut(s)	44, 184
PdmI	GAANNNNTTC	3 cut(s)	399, 708, 1110
PfeI	GAWTC	5 cut(s)	210, 623, 697, 832, 838
PflMI	CCANNNNNTGG	1 cut(s)	201
Ple19I	CGATCG	1 cut(s)	217
Ppu21I	YACGTR	1 cut(s)	615
Psp124BI	GAGCTC	1 cut(s)	237
Psp6I	CCWGG	2 cut(s)	194, 338
PspGI	CCWGG	2 cut(s)	194, 338
PspN4I	GGNNCC	4 cut(s)	124, 193, 229, 307
PspPI	GGNCC	4 cut(s)	11, 71, 114, 305
PstNI	CAGNNNCTG	1 cut(s)	201
PsuI	RGATCY	2 cut(s)	122, 976
PvuI	CGATCG	1 cut(s)	217
RsaI	GTAC	4 cut(s)	613, 617, 753, 1044
RsaNI	GTAC	4 cut(s)	612, 616, 752, 1043
RseI	CAYNNNNRTG	1 cut(s)	356
SacI	GAGCTC	1 cut(s)	237
SaqAI	TTAA	1 cut(s)	1124
Sau3AI	GATC	7 cut(s)	122, 214, 412, 445, 562, 976, 1167
Sau96I	GGNCC	4 cut(s)	11, 71, 114, 305
ScrFI	CCNGG	2 cut(s)	196, 340
SduI	GDGCHC	2 cut(s)	237, 666
SfaNI	GCATC	5 cut(s)	195, 339, 493, 841, 1148
SfcI	CTRYAG	2 cut(s)	381, 1149
Sfr274I	CTCGAG	1 cut(s)	587
SinI	GGWCC	1 cut(s)	11
SlaI	CTCGAG	1 cut(s)	587
SmiMI	CAYNNNNRTG	1 cut(s)	356
SmlI	CTYRAG	4 cut(s)	292, 587, 641, 992
SmoI	CTYRAG	4 cut(s)	292, 587, 641, 992
SnaBI	TACGTA	1 cut(s)	615
Sse9I	AATT	4 cut(s)	297, 361, 771, 1121
SspI	AATATT	1 cut(s)	1179
SspMI	CTAG	4 cut(s)	599, 914, 945, 980
SstI	GAGCTC	1 cut(s)	237
StyD4I	CCNGG	2 cut(s)	194, 338
StyI	CCWWGG	2 cut(s)	117, 351
TaaI	ACNGT	1 cut(s)	155
TaiI	ACGT	2 cut(s)	617, 868
TaqI	TCGA	4 cut(s)	213, 240, 588, 666
TasI	AATT	4 cut(s)	297, 361, 771, 1121
TatI	WGTACW	1 cut(s)	751
TauI	GCSGC	4 cut(s)	49, 100, 225, 275
TfiI	GAWTC	5 cut(s)	210, 623, 697, 832, 838
Tru1I	TTAA	1 cut(s)	1124
Tru9I	TTAA	1 cut(s)	1124
TscAI	CASTG	2 cut(s)	634, 1255
TseFI	GTSAC	3 cut(s)	245, 287, 1246
TseI	GCWGC	6 cut(s)	33, 36, 39, 219, 885, 1306
Tsp45I	GTSAC	3 cut(s)	245, 287, 1246
TspDTI	ATGAA	5 cut(s)	498, 684, 783, 810, 1202
TspGWI	ACGGA	1 cut(s)	896
TspRI	CASTG	2 cut(s)	634, 1255
Van91I	CCANNNNNTGG	1 cut(s)	201
VpaK11BI	GGWCC	1 cut(s)	11
XapI	RAATTY	2 cut(s)	297, 361
XbaI	TCTAGA	2 cut(s)	598, 979
XhoI	CTCGAG	1 cut(s)	587
XmnI	GAANNNNTTC	3 cut(s)	399, 708, 1110
XspI	CTAG	4 cut(s)	599, 914, 945, 980

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.