Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0004630

Physical Location & Seq

Genomic Coordinates Forward (+)

61025469 .. 61028636

Gene Structure 3168 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG378000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGGGGAAAGGTCCGTTCTCGTTGAAGCGTAGCAGCAGCAGCCGGCGGCAGCGGCCGAAGAAGTTTATCGGCCCTCCACCCTCTCCTTTCCCTTCGCCGCCTCCTCCGCCTCGGCCCATGGGATCCGCCCCCTCCTCGCCCCTGAACAACAACAGTTTGGCTGTCAAGGCCAAGAAGAAGGCCGGCGGAGGAGCCAGGCTCTGGATGCGATTCGATCGCTGCGGCGGTTCCGAGCTCGTCGAGTGTGACAAGAATGCTATTATCCGACGCGCCGCCATTCCCCCTCGTGACTTGAGAATTCTCGGCCCCGTTTTCTCCCATTCCTCCAGCATCCTCGCCAGGGAGAAGGCCATGGTGGTGAATTTGGAGTTTATCAAGGCTATAGTTACCGCCGAAGAGGTTCTGTTGCTTGATCCTCTTCGGCAGGAGGTTCTTCCATTTGCGGATCAACTAAGGCAACAGCTTCCTCAATCAAGGGTTGATGAACAAGATAATCAACTGGATGCTTCAACAGCAAGGCAATGGCTACCTGTTCCCGAGGCCGTTGAAGGTTTGCAATGTGATCTCCCATTTGAGTTTCAGGTTCTCGAGATTGCTCTAGAAGTTGTCTGTACGTACTTGGATTCCAGTGTGGCAGACCTTGAGATGGAAGCCTACCCTGTGCTCGATGAACTCGCCAGAAATGTCAGCACCAAGAATCTTGAACTTGTTCGCAGTTTGAAAAGCAATCTCACCCGTTTGCTTGCACGAGTACAGAAGGTGAGGGATGAAATTGAACATTTGTTGGATGACAATGAAGACATGGCACATTTATATTTGACAAGAAAGTGGATTCAGAATCAACAATCTGAGGCCTTGTTGGCGCGTTCTGGCTCAAATAGAAGCAGCCCTACTGCACCCAATCTCCGTCGGCTAGGCTCTAATAGAAGCAGTAGTTTGGTAACTAGCAACAACATGGGTGAAGATGATGTAGAGGATCTAGAAATGTTGCTTGAGGCTTATTTTATGCAACTTGATGGAACTCGTAACAAGATATTGTCTGTAAGTGCAAATCCTCACTTAGCAACCTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0007275 GO:0008150 GO:0008324 GO:0009555 GO:0015075 GO:0015095 GO:0015318 GO:0015693 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0032501 GO:0032502 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1903830

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CorA

Protein Analysis

357

Amino Acids

39.75

Weight (kDa)

6.93

Isoelectric Point (pI)

68.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MRS2-like	PF22099	81 - 281	9.1e-25	Magnesium transporter MRS2-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004630)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58970
fragaria_vesca	FvH4_5g28740 FvH4_5g28740 FvH4_5g28740 FvH4_5g28740 FvH4_5g28740 FvH4_5g28740
malus_domestica	MD08G1238500.v1.1 MD08G1238700.v1.1 MD15G1430500.v1.1
prunus_persica	Prupe.1G575700_v2.0.a1
pyrus_communis	pycom08g20700 pycom08g20720 pycom15g38020 pycom420g00390 pycom420g00500 pycom420g00530
rosa_chinensis	RchiOBHm_Chr1g0372101 RchiOBHm_Chr6g0246761
rosa_laevigata	RLG00000015250 RLG00000026923
rosa_multiflora	Rmu_sc0001755.1_g000027 Rmu_sc0003131.1_g000033
rosa_roxburghii	Rroxscaffold_4G00285260 Rroxscaffold_7G00214470
rosa_rugosa	Rorug01G0369700
rosa_samantha	Rh1AG378000 Rh1BG341400 Rh1CG354800 Rh1DG372500
rosa_wichuraiana	Rw1G033260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1072
AccB7I	CCANNNNNTGG	1 cut(s)	201
AccII	CGCG	2 cut(s)	270, 865
AclWI	GGATC	5 cut(s)	117, 130, 407, 453, 984
AcoI	YGGCCR	1 cut(s)	53
AcsI	RAATTY	2 cut(s)	297, 361
AfaI	GTAC	3 cut(s)	613, 617, 753
AfiI	CCNNNNNNNGG	3 cut(s)	201, 340, 646
AgsI	TTSAA	6 cut(s)	25, 510, 548, 704, 721, 776
AjnI	CCWGG	2 cut(s)	194, 338
AluBI	AGCT	2 cut(s)	235, 463
AluI	AGCT	2 cut(s)	235, 463
Alw21I	GWGCWC	2 cut(s)	237, 666
AlwI	GGATC	5 cut(s)	117, 130, 407, 453, 984
AlwNI	CAGNNNCTG	1 cut(s)	201
Ama87I	CYCGRG	2 cut(s)	536, 587
AoxI	GGCC	9 cut(s)	53, 70, 113, 168, 180, 304, 348, 540, 852
ApeKI	GCWGC	6 cut(s)	33, 36, 39, 49, 219, 885
ApoI	RAATTY	2 cut(s)	297, 361
Asp700I	GAANNNNTTC	2 cut(s)	399, 708
AspLEI	GCGC	2 cut(s)	272, 865
AspS9I	GGNCC	4 cut(s)	11, 71, 114, 305
AsuHPI	GGTGA	4 cut(s)	370, 724, 772, 971
AvaI	CYCGRG	2 cut(s)	536, 587
AvaII	GGWCC	1 cut(s)	11
BamHI	GGATCC	1 cut(s)	122
BanII	GRGCYC	1 cut(s)	237
BarI	GAAGNNNNNNTAC	2 cut(s)	874, 906
BauI	CACGAG	2 cut(s)	285, 747
BbsI	GAAGAC	1 cut(s)	804
Bbv12I	GWGCWC	2 cut(s)	237, 666
BbvI	GCAGC	6 cut(s)	45, 48, 51, 61, 206, 897
BccI	CCATC	2 cut(s)	640, 1010
BceAI	ACGGC	1 cut(s)	527
BciT130I	CCWGG	2 cut(s)	196, 340
BfaI	CTAG	4 cut(s)	599, 914, 945, 980
BfmI	CTRYAG	1 cut(s)	381
BglI	GCCNNNNNGGC	1 cut(s)	860
Bme1390I	CCNGG	2 cut(s)	196, 340
Bme18I	GGWCC	1 cut(s)	11
BmeT110I	CYCGRG	2 cut(s)	536, 587
BmgT120I	GGNCC	4 cut(s)	11, 71, 114, 305
BmiI	GGNNCC	4 cut(s)	124, 193, 229, 307
BmrFI	CCNGG	2 cut(s)	196, 340
BmsI	GCATC	3 cut(s)	195, 339, 493
BpiI	GAAGAC	1 cut(s)	804
BplI	GAGNNNNNCTC	2 cut(s)	183, 215
BpmI	CTGGAG	1 cut(s)	310
BpuEI	CTTGAG	3 cut(s)	313, 662, 1013
BsaAI	YACGTR	1 cut(s)	615
BsaJI	CCNNGG	5 cut(s)	110, 117, 339, 351, 537
BsaXI	ACNNNNNCTCC	2 cut(s)	888, 918
Bsc4I	CCNNNNNNNGG	3 cut(s)	201, 340, 646
Bse118I	RCCGGY	2 cut(s)	42, 182
Bse1I	ACTGG	2 cut(s)	504, 627
Bse3DI	GCAATG	2 cut(s)	527, 563
BseBI	CCWGG	2 cut(s)	196, 340
BseDI	CCNNGG	5 cut(s)	110, 117, 339, 351, 537
BseGI	GGATG	5 cut(s)	210, 330, 508, 772, 793
BseLI	CCNNNNNNNGG	3 cut(s)	201, 340, 646
BseMI	GCAATG	2 cut(s)	527, 563
BseMII	CTCAG	1 cut(s)	840
BseNI	ACTGG	2 cut(s)	504, 627
BseRI	GAGGAG	3 cut(s)	93, 124, 204
BseX3I	CGGCCG	1 cut(s)	53
BseXI	GCAGC	6 cut(s)	45, 48, 51, 61, 206, 897
BsgI	GTGCAG	1 cut(s)	879
Bsh1236I	CGCG	2 cut(s)	270, 865
Bsh1285I	CGRYCG	2 cut(s)	56, 217
BshFI	GGCC	9 cut(s)	55, 72, 115, 170, 182, 306, 350, 542, 854
BsiEI	CGRYCG	2 cut(s)	56, 217
BsiHKAI	GWGCWC	2 cut(s)	237, 666
BsiHKCI	CYCGRG	2 cut(s)	536, 587
BsiSI	CCGG	2 cut(s)	43, 183
BslI	CCNNNNNNNGG	3 cut(s)	201, 340, 646
BsmI	GAATGC	1 cut(s)	259
BsnI	GGCC	9 cut(s)	55, 72, 115, 170, 182, 306, 350, 542, 854
BsoBI	CYCGRG	2 cut(s)	536, 587
Bsp1286I	GDGCHC	2 cut(s)	237, 666
Bsp143I	GATC	6 cut(s)	122, 214, 412, 445, 562, 976
Bsp19I	CCATGG	2 cut(s)	117, 351
BspANI	GGCC	9 cut(s)	55, 72, 115, 170, 182, 306, 350, 542, 854
BspCNI	CTCAG	1 cut(s)	841
BspFNI	CGCG	2 cut(s)	270, 865
BspLI	GGNNCC	4 cut(s)	124, 193, 229, 307
BspPI	GGATC	5 cut(s)	117, 130, 407, 453, 984
BsrDI	GCAATG	2 cut(s)	527, 563
BsrFI	RCCGGY	2 cut(s)	42, 182
BsrI	ACTGG	2 cut(s)	504, 627
BssAI	RCCGGY	2 cut(s)	42, 182
BssECI	CCNNGG	5 cut(s)	110, 117, 339, 351, 537
BssMI	GATC	6 cut(s)	122, 214, 412, 445, 562, 976
BssSI	CACGAG	2 cut(s)	285, 747
BssT1I	CCWWGG	2 cut(s)	117, 351
Bst2BI	CACGAG	2 cut(s)	285, 747
Bst2UI	CCWGG	2 cut(s)	196, 340
Bst4CI	ACNGT	1 cut(s)	155
Bst6I	CTCTTC	2 cut(s)	390, 423
BstBAI	YACGTR	1 cut(s)	615
BstC8I	GCNNGC	3 cut(s)	44, 184, 744
BstDEI	CTNAG	3 cut(s)	452, 849, 1060
BstDSI	CCRYGG	2 cut(s)	117, 351
BstF5I	GGATG	5 cut(s)	210, 330, 508, 772, 793
BstFNI	CGCG	2 cut(s)	270, 865
BstHHI	GCGC	2 cut(s)	272, 865
BstKTI	GATC	6 cut(s)	125, 217, 415, 448, 565, 979
BstMBI	GATC	6 cut(s)	122, 214, 412, 445, 562, 976
BstMCI	CGRYCG	2 cut(s)	56, 217
BstMWI	GCNNNNNNNGC	7 cut(s)	39, 52, 106, 167, 205, 512, 860
BstNI	CCWGG	2 cut(s)	196, 340
BstSCI	CCNGG	2 cut(s)	194, 338
BstSFI	CTRYAG	1 cut(s)	381
BstSNI	TACGTA	1 cut(s)	615
BstUI	CGCG	2 cut(s)	270, 865
BstV1I	GCAGC	6 cut(s)	45, 48, 51, 61, 206, 897
BstV2I	GAAGAC	1 cut(s)	804
BstX2I	RGATCY	2 cut(s)	122, 976
BstYI	RGATCY	2 cut(s)	122, 976
BstZI	CGGCCG	1 cut(s)	53
BsuRI	GGCC	9 cut(s)	55, 72, 115, 170, 182, 306, 350, 542, 854
BtgI	CCRYGG	2 cut(s)	117, 351
BtsCI	GGATG	5 cut(s)	210, 330, 508, 772, 793
BtsIMutI	CAGTG	1 cut(s)	634
Cac8I	GCNNGC	3 cut(s)	44, 184, 744
CaiI	CAGNNNCTG	1 cut(s)	201
CfoI	GCGC	2 cut(s)	272, 865
Cfr10I	RCCGGY	2 cut(s)	42, 182
Cfr13I	GGNCC	4 cut(s)	11, 71, 114, 305
CseI	GACGC	1 cut(s)	276
Csp6I	GTAC	3 cut(s)	612, 616, 752
CviAII	CATG	4 cut(s)	118, 352, 802, 955
CviQI	GTAC	3 cut(s)	612, 616, 752
DdeI	CTNAG	3 cut(s)	452, 849, 1060
DpnI	GATC	6 cut(s)	124, 216, 414, 447, 564, 978
DpnII	GATC	6 cut(s)	122, 214, 412, 445, 562, 976
EaeI	YGGCCR	1 cut(s)	53
EagI	CGGCCG	1 cut(s)	53
Eam1104I	CTCTTC	2 cut(s)	390, 423
EarI	CTCTTC	2 cut(s)	390, 423
EciI	GGCGGA	3 cut(s)	96, 115, 201
Ecl136II	GAGCTC	1 cut(s)	235
EclXI	CGGCCG	1 cut(s)	53
Eco105I	TACGTA	1 cut(s)	615
Eco130I	CCWWGG	2 cut(s)	117, 351
Eco147I	AGGCCT	1 cut(s)	854
Eco24I	GRGCYC	1 cut(s)	237
Eco47I	GGWCC	1 cut(s)	11
Eco52I	CGGCCG	1 cut(s)	53
Eco53kI	GAGCTC	1 cut(s)	235
Eco88I	CYCGRG	2 cut(s)	536, 587
EcoICRI	GAGCTC	1 cut(s)	235
EcoRI	GAATTC	1 cut(s)	297
EcoRII	CCWGG	2 cut(s)	194, 338
EcoT14I	CCWWGG	2 cut(s)	117, 351
EcoT38I	GRGCYC	1 cut(s)	237
ErhI	CCWWGG	2 cut(s)	117, 351
FaeI	CATG	4 cut(s)	121, 355, 805, 958
FaiI	YATR	8 cut(s)	119, 353, 383, 803, 814, 956, 1007, 1072
FatI	CATG	4 cut(s)	117, 351, 801, 954
FokI	GGATG	5 cut(s)	217, 317, 515, 779, 800
FriOI	GRGCYC	1 cut(s)	237
FspBI	CTAG	4 cut(s)	599, 914, 945, 980
GlaI	GCGC	2 cut(s)	271, 864
GsuI	CTGGAG	1 cut(s)	310
HaeIII	GGCC	9 cut(s)	55, 72, 115, 170, 182, 306, 350, 542, 854
HapII	CCGG	2 cut(s)	43, 183
HgaI	GACGC	1 cut(s)	276
HhaI	GCGC	2 cut(s)	272, 865
Hin1II	CATG	4 cut(s)	121, 355, 805, 958
Hin6I	GCGC	2 cut(s)	270, 863
HinP1I	GCGC	2 cut(s)	270, 863
HinfI	GANTC	5 cut(s)	210, 623, 697, 832, 838
HpaII	CCGG	2 cut(s)	43, 183
HphI	GGTGA	4 cut(s)	370, 724, 772, 971
Hpy188I	TCNGA	4 cut(s)	232, 266, 837, 850
Hpy188III	TCNNGA	8 cut(s)	202, 287, 536, 587, 589, 599, 701, 980
Hpy99I	CGWCG	3 cut(s)	242, 270, 912
HpyAV	CCTTC	5 cut(s)	102, 172, 340, 542, 751
HpyCH4III	ACNGT	1 cut(s)	155
HpyCH4IV	ACGT	1 cut(s)	614
HpyCH4V	TGCA	5 cut(s)	556, 746, 896, 1009, 1049
HpyF10VI	GCNNNNNNNGC	7 cut(s)	39, 52, 106, 167, 205, 512, 860
HpyF3I	CTNAG	3 cut(s)	452, 849, 1060
HpySE526I	ACGT	1 cut(s)	614
Hsp92II	CATG	4 cut(s)	121, 355, 805, 958
HspAI	GCGC	2 cut(s)	270, 863
KroI	GCCGGC	2 cut(s)	42, 182
KroNI	GCCGGC	2 cut(s)	44, 184
Kzo9I	GATC	6 cut(s)	122, 214, 412, 445, 562, 976
LmnI	GCTCC	1 cut(s)	191
Lsp1109I	GCAGC	6 cut(s)	45, 48, 51, 61, 206, 897
LweI	GCATC	3 cut(s)	195, 339, 493
MaeI	CTAG	4 cut(s)	599, 914, 945, 980
MaeII	ACGT	1 cut(s)	614
MaeIII	GTNAC	5 cut(s)	245, 287, 385, 940, 1025
MalI	GATC	6 cut(s)	124, 216, 414, 447, 564, 978
MboI	GATC	6 cut(s)	122, 214, 412, 445, 562, 976
MboII	GAAGA	7 cut(s)	70, 187, 407, 410, 425, 809, 974
MflI	RGATCY	2 cut(s)	122, 976
MhlI	GDGCHC	2 cut(s)	237, 666
MluCI	AATT	3 cut(s)	297, 361, 771
MmeI	TCCRAC	2 cut(s)	289, 765
MroNI	GCCGGC	2 cut(s)	42, 182
MroXI	GAANNNNTTC	2 cut(s)	399, 708
MslI	CAYNNNNRTG	1 cut(s)	356
MspA1I	CMGCKG	1 cut(s)	52
MspI	CCGG	2 cut(s)	43, 183
MspR9I	CCNGG	2 cut(s)	196, 340
Mva1269I	GAATGC	1 cut(s)	259
MvaI	CCWGG	2 cut(s)	196, 340
MvnI	CGCG	2 cut(s)	270, 865
MwoI	GCNNNNNNNGC	7 cut(s)	39, 52, 106, 167, 205, 512, 860
NaeI	GCCGGC	2 cut(s)	44, 184
NcoI	CCATGG	2 cut(s)	117, 351
NdeII	GATC	6 cut(s)	122, 214, 412, 445, 562, 976
NgoMIV	GCCGGC	2 cut(s)	42, 182
NlaIII	CATG	4 cut(s)	121, 355, 805, 958
NlaIV	GGNNCC	4 cut(s)	124, 193, 229, 307
NmeAIII	GCCGAG	2 cut(s)	91, 282
NmuCI	GTSAC	2 cut(s)	245, 287
PaeR7I	CTCGAG	1 cut(s)	587
PceI	AGGCCT	1 cut(s)	854
PctI	GAATGC	1 cut(s)	259
PdiI	GCCGGC	2 cut(s)	44, 184
PdmI	GAANNNNTTC	2 cut(s)	399, 708
PfeI	GAWTC	5 cut(s)	210, 623, 697, 832, 838
PflMI	CCANNNNNTGG	1 cut(s)	201
Ple19I	CGATCG	1 cut(s)	217
Ppu21I	YACGTR	1 cut(s)	615
PsiI	TTATAA	1 cut(s)	1072
Psp124BI	GAGCTC	1 cut(s)	237
Psp6I	CCWGG	2 cut(s)	194, 338
PspGI	CCWGG	2 cut(s)	194, 338
PspN4I	GGNNCC	4 cut(s)	124, 193, 229, 307
PspPI	GGNCC	4 cut(s)	11, 71, 114, 305
PstNI	CAGNNNCTG	1 cut(s)	201
PsuI	RGATCY	2 cut(s)	122, 976
PvuI	CGATCG	1 cut(s)	217
RsaI	GTAC	3 cut(s)	613, 617, 753
RsaNI	GTAC	3 cut(s)	612, 616, 752
RseI	CAYNNNNRTG	1 cut(s)	356
SacI	GAGCTC	1 cut(s)	237
Sau3AI	GATC	6 cut(s)	122, 214, 412, 445, 562, 976
Sau96I	GGNCC	4 cut(s)	11, 71, 114, 305
ScrFI	CCNGG	2 cut(s)	196, 340
SduI	GDGCHC	2 cut(s)	237, 666
SfaNI	GCATC	3 cut(s)	195, 339, 493
SfcI	CTRYAG	1 cut(s)	381
Sfr274I	CTCGAG	1 cut(s)	587
SinI	GGWCC	1 cut(s)	11
SlaI	CTCGAG	1 cut(s)	587
SmiMI	CAYNNNNRTG	1 cut(s)	356
SmlI	CTYRAG	4 cut(s)	292, 587, 641, 992
SmoI	CTYRAG	4 cut(s)	292, 587, 641, 992
SnaBI	TACGTA	1 cut(s)	615
Sse9I	AATT	3 cut(s)	297, 361, 771
SseBI	AGGCCT	1 cut(s)	854
SspMI	CTAG	4 cut(s)	599, 914, 945, 980
SstI	GAGCTC	1 cut(s)	237
StuI	AGGCCT	1 cut(s)	854
StyD4I	CCNGG	2 cut(s)	194, 338
StyI	CCWWGG	2 cut(s)	117, 351
TaaI	ACNGT	1 cut(s)	155
TaiI	ACGT	1 cut(s)	617
TaqI	TCGA	4 cut(s)	213, 240, 588, 666
TasI	AATT	3 cut(s)	297, 361, 771
TatI	WGTACW	1 cut(s)	751
TauI	GCSGC	5 cut(s)	49, 55, 100, 225, 275
TfiI	GAWTC	5 cut(s)	210, 623, 697, 832, 838
TscAI	CASTG	1 cut(s)	634
TseFI	GTSAC	2 cut(s)	245, 287
TseI	GCWGC	6 cut(s)	33, 36, 39, 49, 219, 885
Tsp45I	GTSAC	2 cut(s)	245, 287
TspDTI	ATGAA	4 cut(s)	498, 684, 783, 810
TspGWI	ACGGA	1 cut(s)	896
TspRI	CASTG	1 cut(s)	634
Van91I	CCANNNNNTGG	1 cut(s)	201
VpaK11BI	GGWCC	1 cut(s)	11
XapI	RAATTY	2 cut(s)	297, 361
XbaI	TCTAGA	2 cut(s)	598, 979
XhoI	CTCGAG	1 cut(s)	587
XmnI	GAANNNNTTC	2 cut(s)	399, 708
XspI	CTAG	4 cut(s)	599, 914, 945, 980

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.