Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0004630

Physical Location & Seq

Genomic Coordinates Forward (+)

65121874 .. 65123243

Gene Structure 1370 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00214470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGGGAAGGGTCCTTGGAACAACAGTTTGGCTGTGAATGGCAAGAAGAAGGCTAGGGGAGCCAGGCTGTGGATGCGCTTCGATTGTTGTCGCCGTTCCGAGCTAGTCGAGTGTGACAAGAATGCTATCATCCGATGCGCTGCCATTTCCCCTTGTGACTTGAGAATTTTGGCCTTGAGGTTCTCCCATTTCCGCAAGGCATGCACACGTGGGATAACCTCGCTCCGAAACCATGATAAAGTGAGGGATGAAATTGAACATTTATTGGATGACAATGAAGACATGGCACATTTATATTTGACAAGAAAGTGGATTCAGAGTCAACAATCTGAGGCTTTATTGGCGCATTCTGGCTCAAATAGCATTAGCCCACTGCCCCAATCTCGGTTGGCCAAGTTTTCTAATGCAAGTGCTAGTTTGGTAACTAGCAACAACATGGGTCAAGATGATGTGGAGGATCTAGAAATGTTGCTTGAGGCTTATTTTATGCAACTTGATGGAACTCATAACAAGATATTGTCTCTACGGGAGTATATAGATGACACAGAGAACTATGTCAACATTCAACATATCAACCAACAAAACGAACTCATTCAGCTCCAACTAACATTGACCATTGCATCATTTGCTACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0007275 GO:0008150 GO:0008324 GO:0009555 GO:0015075 GO:0015095 GO:0015318 GO:0015693 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0032501 GO:0032502 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1903830

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CorA

Protein Analysis

211

Amino Acids

24.04

Weight (kDa)

6.65

Isoelectric Point (pI)

54.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004630)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58970
fragaria_vesca	FvH4_5g28740 FvH4_5g28740 FvH4_5g28740 FvH4_5g28740 FvH4_5g28740 FvH4_5g28740
malus_domestica	MD08G1238500.v1.1 MD08G1238700.v1.1 MD15G1430500.v1.1
prunus_persica	Prupe.1G575700_v2.0.a1
pyrus_communis	pycom08g20700 pycom08g20720 pycom15g38020 pycom420g00390 pycom420g00500 pycom420g00530
rosa_chinensis	RchiOBHm_Chr1g0372101 RchiOBHm_Chr6g0246761
rosa_laevigata	RLG00000015250 RLG00000026923
rosa_multiflora	Rmu_sc0001755.1_g000027 Rmu_sc0003131.1_g000033
rosa_roxburghii	Rroxscaffold_4G00285260 Rroxscaffold_7G00214470
rosa_rugosa	Rorug01G0369700
rosa_samantha	Rh1AG378000 Rh1BG341400 Rh1CG354800 Rh1DG372500
rosa_wichuraiana	Rw1G033260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	69
AciI	CCGC	1 cut(s)	193
AclWI	GGATC	1 cut(s)	465
AcoI	YGGCCR	1 cut(s)	390
AcsI	RAATTY	1 cut(s)	165
AcvI	CACGTG	1 cut(s)	209
AfiI	CCNNNNNNNGG	2 cut(s)	69, 384
AflIII	ACRYGT	1 cut(s)	206
AgsI	TTSAA	2 cut(s)	257, 566
AjnI	CCWGG	1 cut(s)	62
AjuI	GAANNNNNNNTTGG	2 cut(s)	11, 43
AluBI	AGCT	2 cut(s)	103, 598
AluI	AGCT	2 cut(s)	103, 598
Alw26I	GTCTC	1 cut(s)	525
AlwI	GGATC	1 cut(s)	465
AoxI	GGCC	2 cut(s)	171, 390
ApeKI	GCWGC	1 cut(s)	140
ApoI	RAATTY	1 cut(s)	165
Asp700I	GAANNNNTTC	1 cut(s)	591
AspLEI	GCGC	3 cut(s)	78, 140, 346
AspS9I	GGNCC	1 cut(s)	11
AvaII	GGWCC	1 cut(s)	11
BalI	TGGCCA	1 cut(s)	392
BbrPI	CACGTG	1 cut(s)	209
BbsI	GAAGAC	1 cut(s)	285
BbvI	GCAGC	1 cut(s)	127
BccI	CCATC	1 cut(s)	491
BceAI	ACGGC	1 cut(s)	78
BciT130I	CCWGG	1 cut(s)	64
BcoDI	GTCTC	1 cut(s)	525
BfaI	CTAG	5 cut(s)	54, 104, 414, 426, 461
BisI	GCNGC	1 cut(s)	141
BlsI	GCNGC	1 cut(s)	142
Bme1390I	CCNGG	1 cut(s)	64
Bme18I	GGWCC	1 cut(s)	11
BmgT120I	GGNCC	1 cut(s)	11
BmiI	GGNNCC	2 cut(s)	12, 61
BmrFI	CCNGG	1 cut(s)	64
BmsI	GCATC	3 cut(s)	63, 125, 629
BpiI	GAAGAC	1 cut(s)	285
BpuEI	CTTGAG	3 cut(s)	181, 196, 494
BsaAI	YACGTR	2 cut(s)	209, 633
BsaJI	CCNNGG	1 cut(s)	14
Bsc4I	CCNNNNNNNGG	2 cut(s)	69, 384
Bse3DI	GCAATG	1 cut(s)	615
BseBI	CCWGG	1 cut(s)	64
BseDI	CCNNGG	1 cut(s)	14
BseGI	GGATG	4 cut(s)	78, 129, 253, 274
BseLI	CCNNNNNNNGG	2 cut(s)	69, 384
BseMI	GCAATG	1 cut(s)	615
BseMII	CTCAG	1 cut(s)	321
BseXI	GCAGC	1 cut(s)	127
BshFI	GGCC	2 cut(s)	173, 392
BslI	CCNNNNNNNGG	2 cut(s)	69, 384
BsmAI	GTCTC	1 cut(s)	525
BsmI	GAATGC	2 cut(s)	127, 346
BsnI	GGCC	2 cut(s)	173, 392
Bsp143I	GATC	1 cut(s)	457
BspACI	CCGC	1 cut(s)	193
BspANI	GGCC	2 cut(s)	173, 392
BspCNI	CTCAG	1 cut(s)	322
BspLI	GGNNCC	2 cut(s)	12, 61
BspPI	GGATC	1 cut(s)	465
BsrDI	GCAATG	1 cut(s)	615
BssECI	CCNNGG	1 cut(s)	14
BssMI	GATC	1 cut(s)	457
BssT1I	CCWWGG	1 cut(s)	14
Bst2UI	CCWGG	1 cut(s)	64
Bst4CI	ACNGT	1 cut(s)	26
BstAPI	GCANNNNNTGC	2 cut(s)	201, 626
BstBAI	YACGTR	2 cut(s)	209, 633
BstC8I	GCNNGC	1 cut(s)	202
BstDEI	CTNAG	1 cut(s)	330
BstF5I	GGATG	4 cut(s)	78, 129, 253, 274
BstHHI	GCGC	3 cut(s)	78, 140, 346
BstKTI	GATC	1 cut(s)	460
BstMAI	GTCTC	1 cut(s)	525
BstMBI	GATC	1 cut(s)	457
BstMWI	GCNNNNNNNGC	6 cut(s)	59, 73, 201, 341, 360, 626
BstNI	CCWGG	1 cut(s)	64
BstNSI	RCATGY	1 cut(s)	204
BstSCI	CCNGG	1 cut(s)	62
BstSNI	TACGTA	1 cut(s)	633
BstV1I	GCAGC	1 cut(s)	127
BstV2I	GAAGAC	1 cut(s)	285
BstX2I	RGATCY	1 cut(s)	457
BstYI	RGATCY	1 cut(s)	457
BsuRI	GGCC	2 cut(s)	173, 392
BtsCI	GGATG	4 cut(s)	78, 129, 253, 274
BtsI	GCAGTG	1 cut(s)	371
BtsIMutI	CAGTG	1 cut(s)	371
Cac8I	GCNNGC	1 cut(s)	202
CfoI	GCGC	3 cut(s)	78, 140, 346
Cfr13I	GGNCC	1 cut(s)	11
CviAII	CATG	4 cut(s)	201, 233, 283, 436
DdeI	CTNAG	1 cut(s)	330
DpnI	GATC	1 cut(s)	459
DpnII	GATC	1 cut(s)	457
EaeI	YGGCCR	1 cut(s)	390
Eco105I	TACGTA	1 cut(s)	633
Eco130I	CCWWGG	1 cut(s)	14
Eco47I	GGWCC	1 cut(s)	11
Eco72I	CACGTG	1 cut(s)	209
EcoO109I	RGGNCCY	1 cut(s)	11
EcoRII	CCWGG	1 cut(s)	62
EcoT14I	CCWWGG	1 cut(s)	14
ErhI	CCWWGG	1 cut(s)	14
FaeI	CATG	4 cut(s)	204, 236, 286, 439
FatI	CATG	4 cut(s)	200, 232, 282, 435
Fnu4HI	GCNGC	1 cut(s)	141
FokI	GGATG	4 cut(s)	85, 116, 260, 281
Fsp4HI	GCNGC	1 cut(s)	141
FspBI	CTAG	5 cut(s)	54, 104, 414, 426, 461
GlaI	GCGC	3 cut(s)	77, 139, 345
GluI	GCNGC	1 cut(s)	141
HaeIII	GGCC	2 cut(s)	173, 392
HhaI	GCGC	3 cut(s)	78, 140, 346
Hin1II	CATG	4 cut(s)	204, 236, 286, 439
Hin6I	GCGC	3 cut(s)	76, 138, 344
HinP1I	GCGC	3 cut(s)	76, 138, 344
HincII	GTYRAC	2 cut(s)	323, 559
HindII	GTYRAC	2 cut(s)	323, 559
HinfI	GANTC	2 cut(s)	313, 319
Hpy166II	GTNNAC	2 cut(s)	323, 559
Hpy188I	TCNGA	5 cut(s)	100, 134, 227, 318, 331
Hpy188III	TCNNGA	2 cut(s)	443, 461
Hpy8I	GTNNAC	2 cut(s)	323, 559
HpyAV	CCTTC	1 cut(s)	43
HpyCH4III	ACNGT	1 cut(s)	26
HpyCH4IV	ACGT	2 cut(s)	208, 632
HpyCH4V	TGCA	4 cut(s)	204, 407, 490, 620
HpyF10VI	GCNNNNNNNGC	6 cut(s)	59, 73, 201, 341, 360, 626
HpyF3I	CTNAG	1 cut(s)	330
HpySE526I	ACGT	2 cut(s)	208, 632
Hsp92II	CATG	4 cut(s)	204, 236, 286, 439
HspAI	GCGC	3 cut(s)	76, 138, 344
Kzo9I	GATC	1 cut(s)	457
LmnI	GCTCC	3 cut(s)	59, 228, 603
LpnPI	CCDG	3 cut(s)	49, 76, 336
Lsp1109I	GCAGC	1 cut(s)	127
LweI	GCATC	3 cut(s)	63, 125, 629
MaeI	CTAG	5 cut(s)	54, 104, 414, 426, 461
MaeII	ACGT	2 cut(s)	208, 632
MaeIII	GTNAC	3 cut(s)	113, 155, 421
MalI	GATC	1 cut(s)	459
MboI	GATC	1 cut(s)	457
MboII	GAAGA	2 cut(s)	58, 290
MflI	RGATCY	1 cut(s)	457
MlsI	TGGCCA	1 cut(s)	392
MluCI	AATT	2 cut(s)	165, 252
MluNI	TGGCCA	1 cut(s)	392
MlyI	GAGTC	1 cut(s)	328
MmeI	TCCRAC	1 cut(s)	625
MnlI	CCTC	6 cut(s)	171, 229, 237, 325, 448, 469
Mox20I	TGGCCA	1 cut(s)	392
MroXI	GAANNNNTTC	1 cut(s)	591
MscI	TGGCCA	1 cut(s)	392
Msp20I	TGGCCA	1 cut(s)	392
MspR9I	CCNGG	1 cut(s)	64
Mva1269I	GAATGC	2 cut(s)	127, 346
MvaI	CCWGG	1 cut(s)	64
MwoI	GCNNNNNNNGC	6 cut(s)	59, 73, 201, 341, 360, 626
NdeII	GATC	1 cut(s)	457
NlaIII	CATG	4 cut(s)	204, 236, 286, 439
NlaIV	GGNNCC	2 cut(s)	12, 61
NmuCI	GTSAC	2 cut(s)	113, 155
NspI	RCATGY	1 cut(s)	204
PaeI	GCATGC	1 cut(s)	204
PctI	GAATGC	2 cut(s)	127, 346
PdmI	GAANNNNTTC	1 cut(s)	591
PfeI	GAWTC	1 cut(s)	313
PflMI	CCANNNNNTGG	1 cut(s)	69
PkrI	GCNGC	1 cut(s)	142
PleI	GAGTC	1 cut(s)	327
PmaCI	CACGTG	1 cut(s)	209
PmlI	CACGTG	1 cut(s)	209
PpsI	GAGTC	1 cut(s)	327
Ppu21I	YACGTR	2 cut(s)	209, 633
PpuMI	RGGWCCY	1 cut(s)	11
Psp5II	RGGWCCY	1 cut(s)	11
Psp6I	CCWGG	1 cut(s)	62
PspCI	CACGTG	1 cut(s)	209
PspGI	CCWGG	1 cut(s)	62
PspN4I	GGNNCC	2 cut(s)	12, 61
PspPI	GGNCC	1 cut(s)	11
PspPPI	RGGWCCY	1 cut(s)	11
PsuI	RGATCY	1 cut(s)	457
SatI	GCNGC	1 cut(s)	141
Sau3AI	GATC	1 cut(s)	457
Sau96I	GGNCC	1 cut(s)	11
SchI	GAGTC	1 cut(s)	328
ScrFI	CCNGG	1 cut(s)	64
SetI	ASST	6 cut(s)	105, 182, 211, 221, 600, 635
SfaNI	GCATC	3 cut(s)	63, 125, 629
SinI	GGWCC	1 cut(s)	11
SmlI	CTYRAG	3 cut(s)	160, 175, 473
SmoI	CTYRAG	3 cut(s)	160, 175, 473
SnaBI	TACGTA	1 cut(s)	633
SphI	GCATGC	1 cut(s)	204
Sse9I	AATT	2 cut(s)	165, 252
SsiI	CCGC	1 cut(s)	193
SspMI	CTAG	5 cut(s)	54, 104, 414, 426, 461
StyD4I	CCNGG	1 cut(s)	62
StyI	CCWWGG	1 cut(s)	14
TaaI	ACNGT	1 cut(s)	26
TaiI	ACGT	2 cut(s)	211, 635
TaqI	TCGA	2 cut(s)	81, 108
TasI	AATT	2 cut(s)	165, 252
TfiI	GAWTC	1 cut(s)	313
TscAI	CASTG	1 cut(s)	378
TseFI	GTSAC	2 cut(s)	113, 155
TseI	GCWGC	1 cut(s)	140
Tsp45I	GTSAC	2 cut(s)	113, 155
TspDTI	ATGAA	2 cut(s)	264, 291
TspRI	CASTG	1 cut(s)	378
Van91I	CCANNNNNTGG	1 cut(s)	69
VpaK11BI	GGWCC	1 cut(s)	11
XapI	RAATTY	1 cut(s)	165
XbaI	TCTAGA	1 cut(s)	460
XceI	RCATGY	1 cut(s)	204
XmnI	GAANNNNTTC	1 cut(s)	591
XspI	CTAG	5 cut(s)	54, 104, 414, 426, 461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.