Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0004630

Physical Location & Seq

Genomic Coordinates Reverse (-)

48397258 .. 48399016

Gene Structure 1759 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0369700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGGAGAAAAAGAAGAGAAGAAGTACAAGAACAAGAAGCAAAAACTCAAACACCAAAACCCCAAAGATGACCAAACCACCACAAAACCAGCATCAGATTTCTCCTTCAAGCCAAGCTCCGACGTAAAGGGTCTCCGATTCGGAGGCCAATTCATCGTAAAGTCCTTCACAATCCGCCGTGCAAGGCCCTTTGAGCTCCTGCAACTCCTCTCAGTCACACCAGACATCAAAGAAAACCATATCATCAAGAACAACAAAAAGCTGCCCTTTCCTTCCACCACCGCGTTCTTGCCCACAAACTTCACCATTCTAGCACACCATGCCTGGCACACCCTCACACTAGGCCTAGGCACCAAGAAGTCCAAAGTAGTCCTCTTTGTTTTCGAAAATGAGGCCATGAAGGCCGCCGTGGACCGCGTTTGGCCTCCGGAAATTCCACTAGGGGAAGTGAACAAGAGGCTTATCAGAGGGCTCAGTGGGTGTGAGATGGCAAGGTTCAAGTTCAGGAAAGGGTGCATTACTTTTTATGTGTATGCAGTTAGGCAGATTGGGAACTTGGGTTTTTCAAATGCTGATGATCTCAGAACAATTCTACAGTCTGTGGTGGCTCTTCAAGATTTCTTGGATCACACTGCTATGCTTGCCATGCCTAACCAGAGAAGCATTAACTTTCAACAACCTCCTACAGCCATGGCTCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0007275 GO:0008150 GO:0008324 GO:0009555 GO:0015075 GO:0015095 GO:0015318 GO:0015693 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0032501 GO:0032502 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1903830

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CorA

Protein Analysis

233

Amino Acids

26.49

Weight (kDa)

9.97

Isoelectric Point (pI)

40.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7851	PF25236	31 - 223	1.8e-106	Domain of unknown function (DUF7851)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004630)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58970
fragaria_vesca	FvH4_5g28740 FvH4_5g28740 FvH4_5g28740 FvH4_5g28740 FvH4_5g28740 FvH4_5g28740
malus_domestica	MD08G1238500.v1.1 MD08G1238700.v1.1 MD15G1430500.v1.1
prunus_persica	Prupe.1G575700_v2.0.a1
pyrus_communis	pycom08g20700 pycom08g20720 pycom15g38020 pycom420g00390 pycom420g00500 pycom420g00530
rosa_chinensis	RchiOBHm_Chr1g0372101 RchiOBHm_Chr6g0246761
rosa_laevigata	RLG00000015250 RLG00000026923
rosa_multiflora	Rmu_sc0001755.1_g000027 Rmu_sc0003131.1_g000033
rosa_roxburghii	Rroxscaffold_4G00285260 Rroxscaffold_7G00214470
rosa_rugosa	Rorug01G0369700
rosa_samantha	Rh1AG378000 Rh1BG341400 Rh1CG354800 Rh1DG372500
rosa_wichuraiana	Rw1G033260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	350
AccII	CGCG	2 cut(s)	284, 417
AccIII	TCCGGA	1 cut(s)	427
AciI	CCGC	4 cut(s)	175, 282, 405, 415
AclWI	GGATC	1 cut(s)	633
AcsI	RAATTY	1 cut(s)	432
AfaI	GTAC	1 cut(s)	26
AgsI	TTSAA	5 cut(s)	109, 499, 567, 614, 674
AjnI	CCWGG	1 cut(s)	323
AluBI	AGCT	3 cut(s)	117, 196, 262
AluI	AGCT	3 cut(s)	117, 196, 262
Alw21I	GWGCWC	1 cut(s)	198
Alw26I	GTCTC	1 cut(s)	137
AlwI	GGATC	1 cut(s)	633
Aor13HI	TCCGGA	1 cut(s)	427
AoxI	GGCC	6 cut(s)	145, 185, 343, 393, 402, 422
ApeKI	GCWGC	1 cut(s)	262
ApoI	RAATTY	1 cut(s)	432
AspA2I	CCTAGG	1 cut(s)	346
AspS9I	GGNCC	2 cut(s)	186, 412
AsuHPI	GGTGA	1 cut(s)	295
AsuII	TTCGAA	1 cut(s)	384
AvaII	GGWCC	1 cut(s)	412
AvrII	CCTAGG	1 cut(s)	346
BanI	GGYRCC	1 cut(s)	350
BanII	GRGCYC	2 cut(s)	198, 474
Bbv12I	GWGCWC	1 cut(s)	198
BbvI	GCAGC	1 cut(s)	249
BccI	CCATC	1 cut(s)	481
BceAI	ACGGC	2 cut(s)	162, 392
BciT130I	CCWGG	1 cut(s)	325
BcoDI	GTCTC	1 cut(s)	137
BfaI	CTAG	5 cut(s)	311, 341, 347, 440, 700
BfmI	CTRYAG	2 cut(s)	593, 684
BglI	GCCNNNNNGGC	1 cut(s)	401
BisI	GCNGC	2 cut(s)	263, 405
BlnI	CCTAGG	1 cut(s)	346
BlsI	GCNGC	2 cut(s)	264, 406
Bme1390I	CCNGG	1 cut(s)	325
Bme18I	GGWCC	1 cut(s)	412
BmgT120I	GGNCC	2 cut(s)	186, 412
BmiI	GGNNCC	1 cut(s)	352
BmrFI	CCNGG	1 cut(s)	325
BmsI	GCATC	1 cut(s)	101
Bpu14I	TTCGAA	1 cut(s)	384
BsaI	GGTCTC	1 cut(s)	137
BsaJI	CCNNGG	3 cut(s)	346, 408, 690
BsaWI	WCCGGW	1 cut(s)	427
BseAI	TCCGGA	1 cut(s)	427
BseBI	CCWGG	1 cut(s)	325
BseDI	CCNNGG	3 cut(s)	346, 408, 690
BseMII	CTCAG	3 cut(s)	225, 487, 595
BseRI	GAGGAG	1 cut(s)	197
BseXI	GCAGC	1 cut(s)	249
Bsh1236I	CGCG	2 cut(s)	284, 417
BshFI	GGCC	6 cut(s)	147, 187, 345, 395, 404, 424
BshNI	GGYRCC	1 cut(s)	350
BsiHKAI	GWGCWC	1 cut(s)	198
BsiSI	CCGG	1 cut(s)	428
BsmAI	GTCTC	1 cut(s)	137
BsnI	GGCC	6 cut(s)	147, 187, 345, 395, 404, 424
Bso31I	GGTCTC	1 cut(s)	137
Bsp119I	TTCGAA	1 cut(s)	384
Bsp1286I	GDGCHC	2 cut(s)	198, 474
Bsp13I	TCCGGA	1 cut(s)	427
Bsp143I	GATC	2 cut(s)	577, 625
Bsp19I	CCATGG	1 cut(s)	690
BspACI	CCGC	4 cut(s)	175, 282, 405, 415
BspANI	GGCC	6 cut(s)	147, 187, 345, 395, 404, 424
BspCNI	CTCAG	3 cut(s)	224, 486, 594
BspEI	TCCGGA	1 cut(s)	427
BspFNI	CGCG	2 cut(s)	284, 417
BspLI	GGNNCC	1 cut(s)	352
BspPI	GGATC	1 cut(s)	633
BspQI	GCTCTTC	1 cut(s)	615
BspT104I	TTCGAA	1 cut(s)	384
BspT107I	GGYRCC	1 cut(s)	350
BspTNI	GGTCTC	1 cut(s)	137
BssECI	CCNNGG	3 cut(s)	346, 408, 690
BssMI	GATC	2 cut(s)	577, 625
BssT1I	CCWWGG	2 cut(s)	346, 690
Bst2UI	CCWGG	1 cut(s)	325
Bst4CI	ACNGT	1 cut(s)	597
Bst6I	CTCTTC	2 cut(s)	9, 615
BstAPI	GCANNNNNTGC	1 cut(s)	320
BstBI	TTCGAA	1 cut(s)	384
BstC8I	GCNNGC	1 cut(s)	642
BstDEI	CTNAG	3 cut(s)	211, 473, 581
BstDSI	CCRYGG	2 cut(s)	408, 690
BstFNI	CGCG	2 cut(s)	284, 417
BstKTI	GATC	2 cut(s)	580, 628
BstMAI	GTCTC	1 cut(s)	137
BstMBI	GATC	2 cut(s)	577, 625
BstMWI	GCNNNNNNNGC	5 cut(s)	193, 320, 401, 641, 646
BstNI	CCWGG	1 cut(s)	325
BstSCI	CCNGG	1 cut(s)	323
BstSFI	CTRYAG	2 cut(s)	593, 684
BstUI	CGCG	2 cut(s)	284, 417
BstV1I	GCAGC	1 cut(s)	249
BsuRI	GGCC	6 cut(s)	147, 187, 345, 395, 404, 424
BtgI	CCRYGG	2 cut(s)	408, 690
BtsI	GCAGTG	1 cut(s)	630
BtsIMutI	CAGTG	2 cut(s)	481, 630
Cac8I	GCNNGC	1 cut(s)	642
Cfr13I	GGNCC	2 cut(s)	186, 412
Csp6I	GTAC	1 cut(s)	25
CviAII	CATG	4 cut(s)	320, 397, 646, 691
CviQI	GTAC	1 cut(s)	25
DdeI	CTNAG	3 cut(s)	211, 473, 581
DpnI	GATC	2 cut(s)	579, 627
DpnII	GATC	2 cut(s)	577, 625
Eam1104I	CTCTTC	2 cut(s)	9, 615
EarI	CTCTTC	2 cut(s)	9, 615
EciI	GGCGGA	1 cut(s)	164
Ecl136II	GAGCTC	1 cut(s)	196
Eco130I	CCWWGG	2 cut(s)	346, 690
Eco147I	AGGCCT	1 cut(s)	345
Eco24I	GRGCYC	2 cut(s)	198, 474
Eco31I	GGTCTC	1 cut(s)	137
Eco47I	GGWCC	1 cut(s)	412
Eco53kI	GAGCTC	1 cut(s)	196
EcoICRI	GAGCTC	1 cut(s)	196
EcoO109I	RGGNCCY	1 cut(s)	186
EcoRII	CCWGG	1 cut(s)	323
EcoT14I	CCWWGG	2 cut(s)	346, 690
EcoT38I	GRGCYC	2 cut(s)	198, 474
ErhI	CCWWGG	2 cut(s)	346, 690
FaeI	CATG	4 cut(s)	323, 400, 649, 694
FaiI	YATR	8 cut(s)	240, 321, 398, 528, 534, 638, 647, 692
FalI	AAGNNNNNCTT	2 cut(s)	251, 283
FatI	CATG	4 cut(s)	319, 396, 645, 690
Fnu4HI	GCNGC	2 cut(s)	263, 405
FriOI	GRGCYC	2 cut(s)	198, 474
Fsp4HI	GCNGC	2 cut(s)	263, 405
FspBI	CTAG	5 cut(s)	311, 341, 347, 440, 700
GluI	GCNGC	2 cut(s)	263, 405
HaeIII	GGCC	6 cut(s)	147, 187, 345, 395, 404, 424
HapII	CCGG	1 cut(s)	428
Hin1II	CATG	4 cut(s)	323, 400, 649, 694
HinfI	GANTC	1 cut(s)	138
HpaII	CCGG	1 cut(s)	428
HphI	GGTGA	1 cut(s)	295
Hpy166II	GTNNAC	2 cut(s)	412, 451
Hpy188I	TCNGA	6 cut(s)	97, 121, 137, 143, 467, 584
Hpy188III	TCNNGA	4 cut(s)	247, 428, 505, 614
Hpy8I	GTNNAC	2 cut(s)	412, 451
Hpy99I	CGWCG	1 cut(s)	125
HpyAV	CCTTC	4 cut(s)	115, 175, 282, 394
HpyCH4III	ACNGT	1 cut(s)	597
HpyCH4IV	ACGT	1 cut(s)	123
HpyCH4V	TGCA	4 cut(s)	182, 202, 516, 536
HpyF10VI	GCNNNNNNNGC	5 cut(s)	193, 320, 401, 641, 646
HpyF3I	CTNAG	3 cut(s)	211, 473, 581
HpySE526I	ACGT	1 cut(s)	123
Hsp92II	CATG	4 cut(s)	323, 400, 649, 694
Kpn2I	TCCGGA	1 cut(s)	427
Kzo9I	GATC	2 cut(s)	577, 625
LguI	GCTCTTC	1 cut(s)	615
LmnI	GCTCC	2 cut(s)	122, 201
LpnPI	CCDG	8 cut(s)	102, 212, 234, 310, 337, 441, 490, 668
Lsp1109I	GCAGC	1 cut(s)	249
LweI	GCATC	1 cut(s)	101
MaeI	CTAG	5 cut(s)	311, 341, 347, 440, 700
MaeII	ACGT	1 cut(s)	123
MaeIII	GTNAC	1 cut(s)	214
MalI	GATC	2 cut(s)	579, 627
MboI	GATC	2 cut(s)	577, 625
MboII	GAAGA	3 cut(s)	26, 31, 602
MhlI	GDGCHC	2 cut(s)	198, 474
MluCI	AATT	3 cut(s)	149, 432, 588
MmeI	TCCRAC	1 cut(s)	144
MnlI	CCTC	9 cut(s)	137, 218, 344, 383, 385, 435, 450, 461, 690
MroI	TCCGGA	1 cut(s)	427
MseI	TTAA	1 cut(s)	666
MslI	CAYNNNNRTG	1 cut(s)	635
MspI	CCGG	1 cut(s)	428
MspR9I	CCNGG	1 cut(s)	325
MvaI	CCWGG	1 cut(s)	325
MvnI	CGCG	2 cut(s)	284, 417
MwoI	GCNNNNNNNGC	5 cut(s)	193, 320, 401, 641, 646
NcoI	CCATGG	1 cut(s)	690
NdeII	GATC	2 cut(s)	577, 625
NlaIII	CATG	4 cut(s)	323, 400, 649, 694
NlaIV	GGNNCC	1 cut(s)	352
NmuCI	GTSAC	1 cut(s)	214
NspV	TTCGAA	1 cut(s)	384
PceI	AGGCCT	1 cut(s)	345
PciSI	GCTCTTC	1 cut(s)	615
PfeI	GAWTC	1 cut(s)	138
PkrI	GCNGC	2 cut(s)	264, 406
Psp124BI	GAGCTC	1 cut(s)	198
Psp6I	CCWGG	1 cut(s)	323
PspGI	CCWGG	1 cut(s)	323
PspN4I	GGNNCC	1 cut(s)	352
PspPI	GGNCC	2 cut(s)	186, 412
RsaI	GTAC	1 cut(s)	26
RsaNI	GTAC	1 cut(s)	25
RseI	CAYNNNNRTG	1 cut(s)	635
SacI	GAGCTC	1 cut(s)	198
SapI	GCTCTTC	1 cut(s)	615
SaqAI	TTAA	1 cut(s)	666
SatI	GCNGC	2 cut(s)	263, 405
Sau3AI	GATC	2 cut(s)	577, 625
Sau96I	GGNCC	2 cut(s)	186, 412
ScrFI	CCNGG	1 cut(s)	325
SduI	GDGCHC	2 cut(s)	198, 474
SetI	ASST	6 cut(s)	119, 126, 198, 264, 497, 682
SfaNI	GCATC	1 cut(s)	101
SfcI	CTRYAG	2 cut(s)	593, 684
SfiI	GGCCNNNNNGGCC	1 cut(s)	401
SfuI	TTCGAA	1 cut(s)	384
SinI	GGWCC	1 cut(s)	412
SmiMI	CAYNNNNRTG	1 cut(s)	635
Sse9I	AATT	3 cut(s)	149, 432, 588
SseBI	AGGCCT	1 cut(s)	345
SsiI	CCGC	4 cut(s)	175, 282, 405, 415
SspMI	CTAG	5 cut(s)	311, 341, 347, 440, 700
SstI	GAGCTC	1 cut(s)	198
StuI	AGGCCT	1 cut(s)	345
StyD4I	CCNGG	1 cut(s)	323
StyI	CCWWGG	2 cut(s)	346, 690
TaaI	ACNGT	1 cut(s)	597
TaiI	ACGT	1 cut(s)	126
TaqI	TCGA	1 cut(s)	384
TasI	AATT	3 cut(s)	149, 432, 588
TatI	WGTACW	1 cut(s)	24
TauI	GCSGC	1 cut(s)	407
TfiI	GAWTC	1 cut(s)	138
Tru1I	TTAA	1 cut(s)	666
Tru9I	TTAA	1 cut(s)	666
TscAI	CASTG	2 cut(s)	481, 637
TseFI	GTSAC	1 cut(s)	214
TseI	GCWGC	1 cut(s)	262
Tsp45I	GTSAC	1 cut(s)	214
TspDTI	ATGAA	2 cut(s)	142, 413
TspRI	CASTG	2 cut(s)	481, 637
VpaK11BI	GGWCC	1 cut(s)	412
XapI	RAATTY	1 cut(s)	432
XmaJI	CCTAGG	1 cut(s)	346
XspI	CTAG	5 cut(s)	311, 341, 347, 440, 700

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.