Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0004630

Physical Location & Seq

Genomic Coordinates Forward (+)

37928724 .. 37930262

Gene Structure 1539 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g38020.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGAATGCTTCAACCGGAAGGCAATGGTTAGGTGTTCCTGAAGCCGTTGAAGGTGTGCAGTTTGTCTGTACATACTTGAATTCTAGTGTGGCAGACCTTGAGAGAGAAGCCTACCCTGTTTTAGATGAACTGGCTAGAAATGTTAGCACCAAGAACCTTGAACTTGTGAGGAGTTTGAAAAGCATTCTTACGCGTTTGCTTGCACGTGTACAGAAGGTGCGGGAGTATATTGATGACACGGAGGATTATGTCAACATACAACTTGATAACCAACGAAACGAACTCATTCAGCTCCAGTTGACATTGACCATTGCATCATTTGCGATAGCAGTGGAGACCTTGATATCTGGTATATTTGGTATGAACATCCCCTGTATATTATACACCAAGAAAGGGATATTTGAGCCCTTTGTTGGGGGTATTACGGCATTTTCCGTGTTACTCTTCTTTCTCATATTCCGGTATGCCAGGTGGAAGAAGCTGCTTGATACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0007275 GO:0008150 GO:0008324 GO:0009555 GO:0015075 GO:0015095 GO:0015318 GO:0015693 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0032501 GO:0032502 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1903830

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CorA

Protein Analysis

165

Amino Acids

18.64

Weight (kDa)

5.55

Isoelectric Point (pI)

33.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004630)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58970
fragaria_vesca	FvH4_5g28740 FvH4_5g28740 FvH4_5g28740 FvH4_5g28740 FvH4_5g28740 FvH4_5g28740
malus_domestica	MD08G1238500.v1.1 MD08G1238700.v1.1 MD15G1430500.v1.1
prunus_persica	Prupe.1G575700_v2.0.a1
pyrus_communis	pycom08g20700 pycom08g20720 pycom15g38020 pycom420g00390 pycom420g00500 pycom420g00530
rosa_chinensis	RchiOBHm_Chr1g0372101 RchiOBHm_Chr6g0246761
rosa_laevigata	RLG00000015250 RLG00000026923
rosa_multiflora	Rmu_sc0001755.1_g000027 Rmu_sc0003131.1_g000033
rosa_roxburghii	Rroxscaffold_4G00285260 Rroxscaffold_7G00214470
rosa_rugosa	Rorug01G0369700
rosa_samantha	Rh1AG378000 Rh1BG341400 Rh1CG354800 Rh1DG372500
rosa_wichuraiana	Rw1G033260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	193
AciI	CCGC	1 cut(s)	220
AcsI	RAATTY	1 cut(s)	79
AcuI	CTGAAG	1 cut(s)	60
AcvI	CACGTG	1 cut(s)	206
AfaI	GTAC	2 cut(s)	70, 210
AfiI	CCNNNNNNNGG	3 cut(s)	393, 413, 414
AflIII	ACRYGT	2 cut(s)	191, 205
AgsI	TTSAA	5 cut(s)	12, 50, 79, 161, 178
AjnI	CCWGG	1 cut(s)	467
AluBI	AGCT	2 cut(s)	292, 481
AluI	AGCT	2 cut(s)	292, 481
Alw26I	GTCTC	1 cut(s)	329
ApeKI	GCWGC	1 cut(s)	481
ApoI	RAATTY	1 cut(s)	79
Asp700I	GAANNNNTTC	1 cut(s)	285
BanII	GRGCYC	1 cut(s)	408
BbrPI	CACGTG	1 cut(s)	206
BbvI	GCAGC	1 cut(s)	468
BceAI	ACGGC	2 cut(s)	29, 441
BciT130I	CCWGG	1 cut(s)	469
BcoDI	GTCTC	1 cut(s)	329
BfaI	CTAG	2 cut(s)	84, 135
BisI	GCNGC	1 cut(s)	482
BlsI	GCNGC	1 cut(s)	483
Bme1390I	CCNGG	1 cut(s)	469
BmrFI	CCNGG	1 cut(s)	469
BmsI	GCATC	1 cut(s)	323
BpmI	CTGGAG	1 cut(s)	278
BpuEI	CTTGAG	1 cut(s)	119
BsaAI	YACGTR	1 cut(s)	206
BsaI	GGTCTC	1 cut(s)	329
BsaWI	WCCGGW	2 cut(s)	14, 459
Bsc4I	CCNNNNNNNGG	3 cut(s)	393, 413, 414
Bse1I	ACTGG	2 cut(s)	135, 295
Bse3DI	GCAATG	2 cut(s)	29, 309
BseBI	CCWGG	1 cut(s)	469
BseGI	GGATG	1 cut(s)	366
BseLI	CCNNNNNNNGG	3 cut(s)	393, 413, 414
BseMI	GCAATG	2 cut(s)	29, 309
BseNI	ACTGG	2 cut(s)	135, 295
BseRI	GAGGAG	1 cut(s)	184
BseXI	GCAGC	1 cut(s)	468
BsgI	GTGCAG	1 cut(s)	77
Bsh1236I	CGCG	1 cut(s)	193
BsiSI	CCGG	2 cut(s)	15, 460
BslI	CCNNNNNNNGG	3 cut(s)	393, 413, 414
BsmAI	GTCTC	1 cut(s)	329
BsmI	GAATGC	2 cut(s)	10, 183
Bso31I	GGTCTC	1 cut(s)	329
Bsp1286I	GDGCHC	1 cut(s)	408
Bsp1407I	TGTACA	2 cut(s)	68, 208
BspACI	CCGC	1 cut(s)	220
BspFNI	CGCG	1 cut(s)	193
BspTNI	GGTCTC	1 cut(s)	329
BsrDI	GCAATG	2 cut(s)	29, 309
BsrGI	TGTACA	2 cut(s)	68, 208
BsrI	ACTGG	2 cut(s)	135, 295
Bst2UI	CCWGG	1 cut(s)	469
Bst6I	CTCTTC	1 cut(s)	449
BstAPI	GCANNNNNTGC	1 cut(s)	320
BstAUI	TGTACA	2 cut(s)	68, 208
BstBAI	YACGTR	1 cut(s)	206
BstC8I	GCNNGC	1 cut(s)	201
BstF5I	GGATG	1 cut(s)	366
BstFNI	CGCG	1 cut(s)	193
BstMAI	GTCTC	1 cut(s)	329
BstMWI	GCNNNNNNNGC	1 cut(s)	320
BstNI	CCWGG	1 cut(s)	469
BstSCI	CCNGG	1 cut(s)	467
BstUI	CGCG	1 cut(s)	193
BstV1I	GCAGC	1 cut(s)	468
BtsCI	GGATG	1 cut(s)	366
BtsI	GCAGTG	1 cut(s)	336
BtsIMutI	CAGTG	1 cut(s)	336
Cac8I	GCNNGC	1 cut(s)	201
Csp6I	GTAC	2 cut(s)	69, 209
CviAII	CATG	1 cut(s)	492
CviJI	RGCY	6 cut(s)	44, 110, 134, 292, 406, 481
CviKI_1	RGCY	6 cut(s)	44, 110, 134, 292, 406, 481
CviQI	GTAC	2 cut(s)	69, 209
Eam1104I	CTCTTC	1 cut(s)	449
EarI	CTCTTC	1 cut(s)	449
Eco24I	GRGCYC	1 cut(s)	408
Eco31I	GGTCTC	1 cut(s)	329
Eco32I	GATATC	1 cut(s)	345
Eco57I	CTGAAG	1 cut(s)	60
Eco72I	CACGTG	1 cut(s)	206
EcoRI	GAATTC	1 cut(s)	79
EcoRII	CCWGG	1 cut(s)	467
EcoRV	GATATC	1 cut(s)	345
EcoT38I	GRGCYC	1 cut(s)	408
FaeI	CATG	1 cut(s)	495
FatI	CATG	1 cut(s)	491
FauI	CCCGC	1 cut(s)	213
Fnu4HI	GCNGC	1 cut(s)	482
FokI	GGATG	1 cut(s)	353
FriOI	GRGCYC	1 cut(s)	408
Fsp4HI	GCNGC	1 cut(s)	482
FspBI	CTAG	2 cut(s)	84, 135
GluI	GCNGC	1 cut(s)	482
GsuI	CTGGAG	1 cut(s)	278
HapII	CCGG	2 cut(s)	15, 460
Hin1II	CATG	1 cut(s)	495
HincII	GTYRAC	2 cut(s)	253, 300
HindII	GTYRAC	2 cut(s)	253, 300
HpaII	CCGG	2 cut(s)	15, 460
Hpy166II	GTNNAC	3 cut(s)	209, 253, 300
Hpy188III	TCNNGA	1 cut(s)	38
Hpy8I	GTNNAC	3 cut(s)	209, 253, 300
HpyAV	CCTTC	3 cut(s)	12, 44, 208
HpyCH4IV	ACGT	1 cut(s)	205
HpyCH4V	TGCA	3 cut(s)	58, 203, 314
HpyF10VI	GCNNNNNNNGC	1 cut(s)	320
HpySE526I	ACGT	1 cut(s)	205
Hsp92II	CATG	1 cut(s)	495
LmnI	GCTCC	1 cut(s)	297
Lsp1109I	GCAGC	1 cut(s)	468
LweI	GCATC	1 cut(s)	323
MaeI	CTAG	2 cut(s)	84, 135
MaeII	ACGT	1 cut(s)	205
MaeIII	GTNAC	1 cut(s)	438
MboII	GAAGA	2 cut(s)	436, 487
MhlI	GDGCHC	1 cut(s)	408
MluCI	AATT	1 cut(s)	79
MluI	ACGCGT	1 cut(s)	191
MnlI	CCTC	2 cut(s)	162, 235
MroXI	GAANNNNTTC	1 cut(s)	285
MspI	CCGG	2 cut(s)	15, 460
MspR9I	CCNGG	1 cut(s)	469
Mva1269I	GAATGC	2 cut(s)	10, 183
MvaI	CCWGG	1 cut(s)	469
MvnI	CGCG	1 cut(s)	193
MwoI	GCNNNNNNNGC	1 cut(s)	320
NlaIII	CATG	1 cut(s)	495
PctI	GAATGC	2 cut(s)	10, 183
PdmI	GAANNNNTTC	1 cut(s)	285
PkrI	GCNGC	1 cut(s)	483
PmaCI	CACGTG	1 cut(s)	206
PmlI	CACGTG	1 cut(s)	206
Ppu21I	YACGTR	1 cut(s)	206
Psp6I	CCWGG	1 cut(s)	467
PspCI	CACGTG	1 cut(s)	206
PspGI	CCWGG	1 cut(s)	467
RsaI	GTAC	2 cut(s)	70, 210
RsaNI	GTAC	2 cut(s)	69, 209
SatI	GCNGC	1 cut(s)	482
ScrFI	CCNGG	1 cut(s)	469
SduI	GDGCHC	1 cut(s)	408
SfaNI	GCATC	1 cut(s)	323
SmlI	CTYRAG	1 cut(s)	98
SmoI	CTYRAG	1 cut(s)	98
Sse9I	AATT	1 cut(s)	79
SsiI	CCGC	1 cut(s)	220
SspMI	CTAG	2 cut(s)	84, 135
StyD4I	CCNGG	1 cut(s)	467
TaiI	ACGT	1 cut(s)	208
TasI	AATT	1 cut(s)	79
TatI	WGTACW	2 cut(s)	68, 208
TscAI	CASTG	1 cut(s)	336
TseI	GCWGC	1 cut(s)	481
TspDTI	ATGAA	3 cut(s)	17, 141, 377
TspGWI	ACGGA	2 cut(s)	254, 424
TspRI	CASTG	1 cut(s)	336
XapI	RAATTY	1 cut(s)	79
XmnI	GAANNNNTTC	1 cut(s)	285
XspI	CTAG	2 cut(s)	84, 135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.