Rh1DG372500

magnesium transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0004630
Physical Location & Seq
Forward (+)
59663837 .. 59667545
3709 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG372500.1

Sequence Viewer

Length: 1077 bp
ATGGGGAAAGGTCCGTTCTCGTTGAAGTGTAGCAGCAGCAGCCGGCGGCAGAGGCCGAAGAAGTTTATCGGCCCTCCACCTTCTCCTTTCCCTTCGCCTCCTCCTCCTCAGCCTCGGCCCATGGGATCCGCCCCCTCCTCGCCCCTGAACAACAACAGTTTGGCTGTCAAGGCCAAGAAGAAGGCCGGCGGAGGAGCCAGGCTCTGGATGCGATTCGATCGCTGCGGCGGTTCCGAGCTCGTCGAGTGTGACAAGAATGCTATTATCCGACGCGCCGCCATTCCCCCTCGTGACTTGAGAATTCTCGGCCCCGTTTTCTCCCATTCCTCCAGCATCCTCGCCAGGGAGAAGGCCATGGTGGTGAATTTGGAGTTTATCAAGGCTATAGTTACCGCCGAAGAGGTTCTGTTGCTTGATCCTCTTCGGCAGGAGGTTCTTCCATTTGCGGATCAACTAAGGCAACAGCTTCCTCAATCAAGGGTTGATGAACAAGATAATCAACTGGATGCTTCAACAGCAAGGCAATGGCTACCTGTTCCCGAGGCCGTTGAAGGTTTGCAATGTGATCTCCCATTTGAGTTTCAGGTTCTCGAGATTGCTCTAGAAGTTGTCTGTACGTACTTGGATTCCAGTGTGGCAGACCTTGAGATGGAAGCCTACCCTGTGCTCGATGAACTCGCCAGAAATGTCAGCACCAAGAATCTTGAACTTGTTCGCAGTTTGAAAAGCAATCTCACCCGTTTGCTTGCACGAGTACAGAAGGTGAGGGATGAAATTGAACATTTGTTGGATGACAATGAAGACATGGCACATTTATATTTGACAAGAAAGTGGATTCAGAATCAACAATCTGAGGCCTTGTTGGCACGTTCTGGCTCAAATAGAAGCAGCCCTACTGCACCCAATCTCCGTCGGCTAGGCTCTAATAGAAGCAGTAGTTTGGTAACTAGCAACAACATGGGTGAAGATGATGTAGAGGATCTAGAAATGTTGCTTGAGGCTTATTTTATGCAACTTGATGGAACTCGTAACAAGATATTGTCTGTAAGTGCAAATCCTCACTTAGCAACCTTATAA

Protein Analysis

358

Amino Acids

39.83

Weight (kDa)

6.49

Isoelectric Point (pI)

66.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MRS2-like PF22099 82 - 282 9.2e-25 Magnesium transporter MRS2-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1075
AccB7I CCANNNNNTGG 1 cut(s) 204
AccII CGCG 1 cut(s) 273
AciI CCGC 8 cut(s) 46, 129, 189, 225, 228, 276, 393, 446
AclWI GGATC 5 cut(s) 120, 133, 410, 456, 987
AcsI RAATTY 2 cut(s) 300, 364
AfaI GTAC 3 cut(s) 616, 620, 756
AfiI CCNNNNNNNGG 3 cut(s) 204, 343, 649
AgsI TTSAA 6 cut(s) 25, 513, 551, 707, 724, 779
AjnI CCWGG 2 cut(s) 197, 341
AluBI AGCT 2 cut(s) 238, 466
AluI AGCT 2 cut(s) 238, 466
Alw21I GWGCWC 2 cut(s) 240, 669
AlwI GGATC 5 cut(s) 120, 133, 410, 456, 987
AlwNI CAGNNNCTG 1 cut(s) 204
Ama87I CYCGRG 2 cut(s) 539, 590
AoxI GGCC 9 cut(s) 53, 70, 116, 171, 183, 307, 351, 543, 855
ApeKI GCWGC 5 cut(s) 33, 36, 39, 222, 888
ApoI RAATTY 2 cut(s) 300, 364
Asp700I GAANNNNTTC 2 cut(s) 402, 711
AspLEI GCGC 1 cut(s) 275
AspS9I GGNCC 4 cut(s) 11, 71, 117, 308
AsuHPI GGTGA 4 cut(s) 373, 727, 775, 974
AvaI CYCGRG 2 cut(s) 539, 590
AvaII GGWCC 1 cut(s) 11
BamHI GGATCC 1 cut(s) 125
BanII GRGCYC 1 cut(s) 240
BarI GAAGNNNNNNTAC 2 cut(s) 877, 909
BauI CACGAG 2 cut(s) 288, 750
BbsI GAAGAC 1 cut(s) 807
Bbv12I GWGCWC 2 cut(s) 240, 669
BbvCI CCTCAGC 1 cut(s) 108
BbvI GCAGC 5 cut(s) 45, 48, 51, 209, 900
BccI CCATC 2 cut(s) 643, 1013
BceAI ACGGC 1 cut(s) 530
BciT130I CCWGG 2 cut(s) 199, 343
BfaI CTAG 4 cut(s) 602, 917, 948, 983
BfmI CTRYAG 1 cut(s) 384
BglI GCCNNNNNGGC 1 cut(s) 863
BisI GCNGC 8 cut(s) 34, 37, 40, 47, 223, 226, 276, 889
BlsI GCNGC 8 cut(s) 35, 38, 41, 48, 224, 227, 277, 890
Bme1390I CCNGG 2 cut(s) 199, 343
Bme18I GGWCC 1 cut(s) 11
BmeT110I CYCGRG 2 cut(s) 539, 590
BmgT120I GGNCC 4 cut(s) 11, 71, 117, 308
BmiI GGNNCC 4 cut(s) 127, 196, 232, 310
BmrFI CCNGG 2 cut(s) 199, 343
BmsI GCATC 3 cut(s) 198, 342, 496
BpiI GAAGAC 1 cut(s) 807
BplI GAGNNNNNCTC 2 cut(s) 186, 218
BpmI CTGGAG 1 cut(s) 313
Bpu10I CCTNAGC 1 cut(s) 108
BpuEI CTTGAG 3 cut(s) 316, 665, 1016
BsaAI YACGTR 1 cut(s) 618
BsaJI CCNNGG 5 cut(s) 113, 120, 342, 354, 540
BsaXI ACNNNNNCTCC 2 cut(s) 891, 921
Bsc4I CCNNNNNNNGG 3 cut(s) 204, 343, 649
Bse118I RCCGGY 2 cut(s) 42, 185
Bse1I ACTGG 2 cut(s) 507, 630
Bse3DI GCAATG 2 cut(s) 530, 566
BseBI CCWGG 2 cut(s) 199, 343
BseDI CCNNGG 5 cut(s) 113, 120, 342, 354, 540
BseGI GGATG 5 cut(s) 213, 333, 511, 775, 796
BseLI CCNNNNNNNGG 3 cut(s) 204, 343, 649
BseMI GCAATG 2 cut(s) 530, 566
BseMII CTCAG 2 cut(s) 122, 843
BseNI ACTGG 2 cut(s) 507, 630
BseRI GAGGAG 5 cut(s) 90, 93, 96, 127, 207
BseXI GCAGC 5 cut(s) 45, 48, 51, 209, 900
BsgI GTGCAG 1 cut(s) 882
Bsh1236I CGCG 1 cut(s) 273
Bsh1285I CGRYCG 1 cut(s) 220
BshFI GGCC 9 cut(s) 55, 72, 118, 173, 185, 309, 353, 545, 857
BsiEI CGRYCG 1 cut(s) 220
BsiHKAI GWGCWC 2 cut(s) 240, 669
BsiHKCI CYCGRG 2 cut(s) 539, 590
BsiSI CCGG 2 cut(s) 43, 186
BslI CCNNNNNNNGG 3 cut(s) 204, 343, 649
BsmI GAATGC 1 cut(s) 262
BsnI GGCC 9 cut(s) 55, 72, 118, 173, 185, 309, 353, 545, 857
BsoBI CYCGRG 2 cut(s) 539, 590
Bsp1286I GDGCHC 2 cut(s) 240, 669
Bsp143I GATC 6 cut(s) 125, 217, 415, 448, 565, 979
Bsp19I CCATGG 2 cut(s) 120, 354
BspACI CCGC 8 cut(s) 46, 129, 189, 225, 228, 276, 393, 446
BspANI GGCC 9 cut(s) 55, 72, 118, 173, 185, 309, 353, 545, 857
BspCNI CTCAG 2 cut(s) 121, 844
BspFNI CGCG 1 cut(s) 273
BspLI GGNNCC 4 cut(s) 127, 196, 232, 310
BspPI GGATC 5 cut(s) 120, 133, 410, 456, 987
BsrDI GCAATG 2 cut(s) 530, 566
BsrFI RCCGGY 2 cut(s) 42, 185
BsrI ACTGG 2 cut(s) 507, 630
BssAI RCCGGY 2 cut(s) 42, 185
BssECI CCNNGG 5 cut(s) 113, 120, 342, 354, 540
BssMI GATC 6 cut(s) 125, 217, 415, 448, 565, 979
BssSI CACGAG 2 cut(s) 288, 750
BssT1I CCWWGG 2 cut(s) 120, 354
Bst2BI CACGAG 2 cut(s) 288, 750
Bst2UI CCWGG 2 cut(s) 199, 343
Bst4CI ACNGT 1 cut(s) 158
Bst6I CTCTTC 2 cut(s) 393, 426
BstBAI YACGTR 1 cut(s) 618
BstC8I GCNNGC 3 cut(s) 44, 187, 747
BstDEI CTNAG 4 cut(s) 108, 455, 852, 1063
BstDSI CCRYGG 2 cut(s) 120, 354
BstF5I GGATG 5 cut(s) 213, 333, 511, 775, 796
BstFNI CGCG 1 cut(s) 273
BstHHI GCGC 1 cut(s) 275
BstKTI GATC 6 cut(s) 128, 220, 418, 451, 568, 982
BstMBI GATC 6 cut(s) 125, 217, 415, 448, 565, 979
BstMCI CGRYCG 1 cut(s) 220
BstMWI GCNNNNNNNGC 6 cut(s) 39, 52, 170, 208, 515, 863
BstNI CCWGG 2 cut(s) 199, 343
BstSCI CCNGG 2 cut(s) 197, 341
BstSFI CTRYAG 1 cut(s) 384
BstSNI TACGTA 1 cut(s) 618
BstUI CGCG 1 cut(s) 273
BstV1I GCAGC 5 cut(s) 45, 48, 51, 209, 900
BstV2I GAAGAC 1 cut(s) 807
BstX2I RGATCY 2 cut(s) 125, 979
BstYI RGATCY 2 cut(s) 125, 979
BsuRI GGCC 9 cut(s) 55, 72, 118, 173, 185, 309, 353, 545, 857
BtgI CCRYGG 2 cut(s) 120, 354
BtsCI GGATG 5 cut(s) 213, 333, 511, 775, 796
BtsIMutI CAGTG 1 cut(s) 637
Cac8I GCNNGC 3 cut(s) 44, 187, 747
CaiI CAGNNNCTG 1 cut(s) 204
CfoI GCGC 1 cut(s) 275
Cfr10I RCCGGY 2 cut(s) 42, 185
Cfr13I GGNCC 4 cut(s) 11, 71, 117, 308
CseI GACGC 1 cut(s) 279
Csp6I GTAC 3 cut(s) 615, 619, 755
CviAII CATG 4 cut(s) 121, 355, 805, 958
CviQI GTAC 3 cut(s) 615, 619, 755
DdeI CTNAG 4 cut(s) 108, 455, 852, 1063
DpnI GATC 6 cut(s) 127, 219, 417, 450, 567, 981
DpnII GATC 6 cut(s) 125, 217, 415, 448, 565, 979
Eam1104I CTCTTC 2 cut(s) 393, 426
EarI CTCTTC 2 cut(s) 393, 426
EciI GGCGGA 2 cut(s) 118, 204
Ecl136II GAGCTC 1 cut(s) 238
Eco105I TACGTA 1 cut(s) 618
Eco130I CCWWGG 2 cut(s) 120, 354
Eco147I AGGCCT 1 cut(s) 857
Eco24I GRGCYC 1 cut(s) 240
Eco47I GGWCC 1 cut(s) 11
Eco53kI GAGCTC 1 cut(s) 238
Eco88I CYCGRG 2 cut(s) 539, 590
EcoICRI GAGCTC 1 cut(s) 238
EcoRI GAATTC 1 cut(s) 300
EcoRII CCWGG 2 cut(s) 197, 341
EcoT14I CCWWGG 2 cut(s) 120, 354
EcoT38I GRGCYC 1 cut(s) 240
ErhI CCWWGG 2 cut(s) 120, 354
FaeI CATG 4 cut(s) 124, 358, 808, 961
FaiI YATR 8 cut(s) 122, 356, 386, 806, 817, 959, 1010, 1075
FatI CATG 4 cut(s) 120, 354, 804, 957
Fnu4HI GCNGC 8 cut(s) 34, 37, 40, 47, 223, 226, 276, 889
FokI GGATG 5 cut(s) 220, 320, 518, 782, 803
FriOI GRGCYC 1 cut(s) 240
Fsp4HI GCNGC 8 cut(s) 34, 37, 40, 47, 223, 226, 276, 889
FspBI CTAG 4 cut(s) 602, 917, 948, 983
GlaI GCGC 1 cut(s) 274
GluI GCNGC 8 cut(s) 34, 37, 40, 47, 223, 226, 276, 889
GsuI CTGGAG 1 cut(s) 313
HaeIII GGCC 9 cut(s) 55, 72, 118, 173, 185, 309, 353, 545, 857
HapII CCGG 2 cut(s) 43, 186
HgaI GACGC 1 cut(s) 279
HhaI GCGC 1 cut(s) 275
Hin1II CATG 4 cut(s) 124, 358, 808, 961
Hin6I GCGC 1 cut(s) 273
HinP1I GCGC 1 cut(s) 273
HinfI GANTC 5 cut(s) 213, 626, 700, 835, 841
HpaII CCGG 2 cut(s) 43, 186
HphI GGTGA 4 cut(s) 373, 727, 775, 974
Hpy188I TCNGA 4 cut(s) 235, 269, 840, 853
Hpy188III TCNNGA 8 cut(s) 205, 290, 539, 590, 592, 602, 704, 983
Hpy99I CGWCG 3 cut(s) 245, 273, 915
HpyAV CCTTC 6 cut(s) 90, 102, 175, 343, 545, 754
HpyCH4III ACNGT 1 cut(s) 158
HpyCH4IV ACGT 2 cut(s) 617, 868
HpyCH4V TGCA 5 cut(s) 559, 749, 899, 1012, 1052
HpyF10VI GCNNNNNNNGC 6 cut(s) 39, 52, 170, 208, 515, 863
HpyF3I CTNAG 4 cut(s) 108, 455, 852, 1063
HpySE526I ACGT 2 cut(s) 617, 868
Hsp92II CATG 4 cut(s) 124, 358, 808, 961
HspAI GCGC 1 cut(s) 273
KroI GCCGGC 2 cut(s) 42, 185
KroNI GCCGGC 2 cut(s) 44, 187
Kzo9I GATC 6 cut(s) 125, 217, 415, 448, 565, 979
LmnI GCTCC 1 cut(s) 194
Lsp1109I GCAGC 5 cut(s) 45, 48, 51, 209, 900
LweI GCATC 3 cut(s) 198, 342, 496
MaeI CTAG 4 cut(s) 602, 917, 948, 983
MaeII ACGT 2 cut(s) 617, 868
MaeIII GTNAC 5 cut(s) 248, 290, 388, 943, 1028
MalI GATC 6 cut(s) 127, 219, 417, 450, 567, 981
MboI GATC 6 cut(s) 125, 217, 415, 448, 565, 979
MboII GAAGA 7 cut(s) 70, 190, 410, 413, 428, 812, 977
MflI RGATCY 2 cut(s) 125, 979
MhlI GDGCHC 2 cut(s) 240, 669
MluCI AATT 3 cut(s) 300, 364, 774
MmeI TCCRAC 2 cut(s) 292, 768
MroNI GCCGGC 2 cut(s) 42, 185
MroXI GAANNNNTTC 2 cut(s) 402, 711
MslI CAYNNNNRTG 1 cut(s) 359
MspI CCGG 2 cut(s) 43, 186
MspR9I CCNGG 2 cut(s) 199, 343
Mva1269I GAATGC 1 cut(s) 262
MvaI CCWGG 2 cut(s) 199, 343
MvnI CGCG 1 cut(s) 273
MwoI GCNNNNNNNGC 6 cut(s) 39, 52, 170, 208, 515, 863
NaeI GCCGGC 2 cut(s) 44, 187
NcoI CCATGG 2 cut(s) 120, 354
NdeII GATC 6 cut(s) 125, 217, 415, 448, 565, 979
NgoMIV GCCGGC 2 cut(s) 42, 185
NlaIII CATG 4 cut(s) 124, 358, 808, 961
NlaIV GGNNCC 4 cut(s) 127, 196, 232, 310
NmeAIII GCCGAG 2 cut(s) 94, 285
NmuCI GTSAC 2 cut(s) 248, 290
PaeR7I CTCGAG 1 cut(s) 590
PceI AGGCCT 1 cut(s) 857
PctI GAATGC 1 cut(s) 262
PdiI GCCGGC 2 cut(s) 44, 187
PdmI GAANNNNTTC 2 cut(s) 402, 711
PfeI GAWTC 5 cut(s) 213, 626, 700, 835, 841
PflMI CCANNNNNTGG 1 cut(s) 204
PkrI GCNGC 8 cut(s) 35, 38, 41, 48, 224, 227, 277, 890
Ple19I CGATCG 1 cut(s) 220
Ppu21I YACGTR 1 cut(s) 618
PsiI TTATAA 1 cut(s) 1075
Psp124BI GAGCTC 1 cut(s) 240
Psp6I CCWGG 2 cut(s) 197, 341
PspGI CCWGG 2 cut(s) 197, 341
PspN4I GGNNCC 4 cut(s) 127, 196, 232, 310
PspPI GGNCC 4 cut(s) 11, 71, 117, 308
PstNI CAGNNNCTG 1 cut(s) 204
PsuI RGATCY 2 cut(s) 125, 979
PvuI CGATCG 1 cut(s) 220
RsaI GTAC 3 cut(s) 616, 620, 756
RsaNI GTAC 3 cut(s) 615, 619, 755
RseI CAYNNNNRTG 1 cut(s) 359
SacI GAGCTC 1 cut(s) 240
SatI GCNGC 8 cut(s) 34, 37, 40, 47, 223, 226, 276, 889
Sau3AI GATC 6 cut(s) 125, 217, 415, 448, 565, 979
Sau96I GGNCC 4 cut(s) 11, 71, 117, 308
ScrFI CCNGG 2 cut(s) 199, 343
SduI GDGCHC 2 cut(s) 240, 669
SfaNI GCATC 3 cut(s) 198, 342, 496
SfcI CTRYAG 1 cut(s) 384
Sfr274I CTCGAG 1 cut(s) 590
SinI GGWCC 1 cut(s) 11
SlaI CTCGAG 1 cut(s) 590
SmiMI CAYNNNNRTG 1 cut(s) 359
SmlI CTYRAG 4 cut(s) 295, 590, 644, 995
SmoI CTYRAG 4 cut(s) 295, 590, 644, 995
SnaBI TACGTA 1 cut(s) 618
Sse9I AATT 3 cut(s) 300, 364, 774
SseBI AGGCCT 1 cut(s) 857
SsiI CCGC 8 cut(s) 46, 129, 189, 225, 228, 276, 393, 446
SspMI CTAG 4 cut(s) 602, 917, 948, 983
SstI GAGCTC 1 cut(s) 240
StuI AGGCCT 1 cut(s) 857
StyD4I CCNGG 2 cut(s) 197, 341
StyI CCWWGG 2 cut(s) 120, 354
TaaI ACNGT 1 cut(s) 158
TaiI ACGT 2 cut(s) 620, 871
TaqI TCGA 4 cut(s) 216, 243, 591, 669
TasI AATT 3 cut(s) 300, 364, 774
TatI WGTACW 1 cut(s) 754
TauI GCSGC 3 cut(s) 49, 228, 278
TfiI GAWTC 5 cut(s) 213, 626, 700, 835, 841
TscAI CASTG 1 cut(s) 637
TseFI GTSAC 2 cut(s) 248, 290
TseI GCWGC 5 cut(s) 33, 36, 39, 222, 888
Tsp45I GTSAC 2 cut(s) 248, 290
TspDTI ATGAA 4 cut(s) 501, 687, 786, 813
TspGWI ACGGA 1 cut(s) 899
TspRI CASTG 1 cut(s) 637
Van91I CCANNNNNTGG 1 cut(s) 204
VpaK11BI GGWCC 1 cut(s) 11
XapI RAATTY 2 cut(s) 300, 364
XbaI TCTAGA 2 cut(s) 601, 982
XhoI CTCGAG 1 cut(s) 590
XmnI GAANNNNTTC 2 cut(s) 402, 711
XspI CTAG 4 cut(s) 602, 917, 948, 983
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.