Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0004630

Physical Location & Seq

Genomic Coordinates Forward (+)

20398006 .. 20401374

Gene Structure 3369 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g20720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGCGATTTGACCACTTCGGCATGTCAGAGCTCGTTGAGTGTGATAAGAACGCTATCATTCGTCGCACTGCCATTCCCGCCCGGGACTTGAGGATTCTCGGCCCTGTCTTCTCCCATTCCTCCAGCATCCTTGCCAGGGAGAAGGCCATGGTGGTTAATTTAGAATTTATAAAGGCTATAGTTACAGCCGAACAGGTTTTGTTGCTTGATCCTCTTCGACAGGAGGTTCTTCCATTTGCGGATCAGCTAAGGCAACAACTTCCTCAGAAAAGCCAATCCAGGATACAAGAAGCAAGTCCACTCGGTGAAGAAGATAATGGAATGGATGTTTCAACCGGAAGGCAACGGTTACCTGTTCCCGAGGCCGTTGAAGGTTTGCAGTGTGATCTCCCATTTGAGTTTCAGGTTCTTGAAGTTGCATTAGAAGTTGTCTGTACATATTTGGATTCTAGTGTGGCAGACCTTGAGAGAGAAGCCTACCCTGTGTTAGATGACCTGGCCAGAAATGTTAGCACCAAAAACCTTGAACTCGTGAGGATTTTGAAAAGCAATCTTACTCGTTTGCTTGCACGCGTCCAGAAGATGAAGGATGAAATCGAAAATTTGTTGGATGACAATGAAGATATGGCACATTTATATTTAACAAGGAAATGGATGCAGAATCAACAGCCCGAGGATTTGTTGGGGCGTTCTGCGTCAAATAGAATCCCCACATCCCATCTTCGTCAGCTTGGTTCCACCAGAAGTGGGAGTTTGGTAACCAGTTACTATATGGACCACGATGACGTAGAAGATCTAGAGATGCTGCTTGATGCATATTTTATGCAACTGGATAGAACACGTAACAAGATATTATCTTTGCGGGAGTATATTGATGACACGGAGGATTATGTCAACATACGACTTGACAACCAACGAAATGAACTCATTCAGTTCCAGTTGACATTGAGCATTGCATCGTTTGCGATATCGGTGAAGACTTCGATAGCTGGGGTATTTGGTTTTAACATCTACTGTCCAATATTTAACGTTAATGGGATATTTGTACGGTTTGTTGTTGGTATGGTAGCATTTGGCCTGGCTATCTTCTTTCTCATCTACGGGTATGCGAGGTGGAAGAAGCTGCTTGGTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0007275 GO:0008150 GO:0008324 GO:0009555 GO:0015075 GO:0015095 GO:0015318 GO:0015693 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0032501 GO:0032502 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1903830

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CorA

Protein Analysis

379

Amino Acids

43.21

Weight (kDa)

5.06

Isoelectric Point (pI)

49.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MRS2-like	PF22099	13 - 223	1.2e-21	Magnesium transporter MRS2-like
MRS2-like	PF22099	258 - 306	2.4e-06	Magnesium transporter MRS2-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004630)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58970
fragaria_vesca	FvH4_5g28740 FvH4_5g28740 FvH4_5g28740 FvH4_5g28740 FvH4_5g28740 FvH4_5g28740
malus_domestica	MD08G1238500.v1.1 MD08G1238700.v1.1 MD15G1430500.v1.1
prunus_persica	Prupe.1G575700_v2.0.a1
pyrus_communis	pycom08g20700 pycom08g20720 pycom15g38020 pycom420g00390 pycom420g00500 pycom420g00530
rosa_chinensis	RchiOBHm_Chr1g0372101 RchiOBHm_Chr6g0246761
rosa_laevigata	RLG00000015250 RLG00000026923
rosa_multiflora	Rmu_sc0001755.1_g000027 Rmu_sc0003131.1_g000033
rosa_roxburghii	Rroxscaffold_4G00285260 Rroxscaffold_7G00214470
rosa_rugosa	Rorug01G0369700
rosa_samantha	Rh1AG378000 Rh1BG341400 Rh1CG354800 Rh1DG372500
rosa_wichuraiana	Rw1G033260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	170
AccII	CGCG	1 cut(s)	573
AciI	CCGC	3 cut(s)	78, 239, 862
AclI	AACGTT	1 cut(s)	1029
AclWI	GGATC	2 cut(s)	203, 249
AcoI	YGGCCR	1 cut(s)	498
AcsI	RAATTY	2 cut(s)	164, 601
AdeI	CACNNNGTG	1 cut(s)	305
AfaI	GTAC	3 cut(s)	436, 1047, 1132
AfiI	CCNNNNNNNGG	2 cut(s)	136, 747
AflIII	ACRYGT	2 cut(s)	571, 839
AgsI	TTSAA	5 cut(s)	333, 371, 413, 527, 544
AjnI	CCWGG	4 cut(s)	134, 278, 495, 1077
AluBI	AGCT	5 cut(s)	31, 247, 730, 989, 1123
AluI	AGCT	5 cut(s)	31, 247, 730, 989, 1123
Alw21I	GWGCWC	1 cut(s)	33
AlwI	GGATC	2 cut(s)	203, 249
Ama87I	CYCGRG	3 cut(s)	81, 359, 671
AoxI	GGCC	5 cut(s)	100, 144, 363, 498, 1075
ApeKI	GCWGC	2 cut(s)	805, 1123
ApoI	RAATTY	2 cut(s)	164, 601
Asp700I	GAANNNNTTC	1 cut(s)	927
AspS9I	GGNCC	2 cut(s)	101, 775
AsuC2I	CCSGG	2 cut(s)	82, 83
AsuHPI	GGTGA	2 cut(s)	317, 985
AvaI	CYCGRG	3 cut(s)	81, 359, 671
AvaII	GGWCC	1 cut(s)	775
BalI	TGGCCA	1 cut(s)	500
BanII	GRGCYC	1 cut(s)	33
BauI	CACGAG	1 cut(s)	530
BbsI	GAAGAC	2 cut(s)	100, 983
Bbv12I	GWGCWC	1 cut(s)	33
BbvI	GCAGC	2 cut(s)	792, 1110
BccI	CCATC	1 cut(s)	726
BceAI	ACGGC	1 cut(s)	350
BciT130I	CCWGG	4 cut(s)	136, 280, 497, 1079
BciVI	GTATCC	1 cut(s)	276
BcnI	CCSGG	2 cut(s)	82, 83
BfaI	CTAG	2 cut(s)	450, 797
BfmI	CTRYAG	1 cut(s)	177
BfuI	GTATCC	1 cut(s)	276
BglII	AGATCT	1 cut(s)	793
BisI	GCNGC	2 cut(s)	806, 1124
BlsI	GCNGC	2 cut(s)	807, 1125
Bme1390I	CCNGG	6 cut(s)	82, 83, 136, 280, 497, 1079
Bme18I	GGWCC	1 cut(s)	775
BmeT110I	CYCGRG	3 cut(s)	81, 359, 671
BmgT120I	GGNCC	2 cut(s)	101, 775
BmiI	GGNNCC	1 cut(s)	736
BmrFI	CCNGG	6 cut(s)	82, 83, 136, 280, 497, 1079
BmsI	GCATC	5 cut(s)	135, 645, 792, 802, 965
BpiI	GAAGAC	2 cut(s)	100, 983
BpmI	CTGGAG	1 cut(s)	106
Bpu10I	CCTNAGC	1 cut(s)	248
BpuEI	CTTGAG	2 cut(s)	109, 485
BpuMI	CCSGG	2 cut(s)	82, 83
BsaAI	YACGTR	1 cut(s)	842
BsaJI	CCNNGG	5 cut(s)	81, 135, 147, 360, 672
BsaWI	WCCGGW	1 cut(s)	335
Bsc4I	CCNNNNNNNGG	2 cut(s)	136, 747
Bse1I	ACTGG	3 cut(s)	762, 834, 937
Bse3DI	GCAATG	1 cut(s)	951
BseBI	CCWGG	4 cut(s)	136, 280, 497, 1079
BseDI	CCNNGG	5 cut(s)	81, 135, 147, 360, 672
BseGI	GGATG	6 cut(s)	126, 331, 595, 616, 660, 713
BseLI	CCNNNNNNNGG	2 cut(s)	136, 747
BseMI	GCAATG	1 cut(s)	951
BseMII	CTCAG	1 cut(s)	278
BseNI	ACTGG	3 cut(s)	762, 834, 937
BseXI	GCAGC	2 cut(s)	792, 1110
BseYI	CCCAGC	1 cut(s)	989
Bsh1236I	CGCG	1 cut(s)	573
BshFI	GGCC	5 cut(s)	102, 146, 365, 500, 1077
BsiHKAI	GWGCWC	1 cut(s)	33
BsiHKCI	CYCGRG	3 cut(s)	81, 359, 671
BsiSI	CCGG	2 cut(s)	82, 336
BslFI	GGGAC	1 cut(s)	98
BslI	CCNNNNNNNGG	2 cut(s)	136, 747
BsmFI	GGGAC	1 cut(s)	98
BsnI	GGCC	5 cut(s)	102, 146, 365, 500, 1077
BsoBI	CYCGRG	3 cut(s)	81, 359, 671
Bsp1286I	GDGCHC	1 cut(s)	33
Bsp1407I	TGTACA	1 cut(s)	434
Bsp143I	GATC	4 cut(s)	208, 241, 385, 793
Bsp19I	CCATGG	1 cut(s)	147
BspACI	CCGC	3 cut(s)	78, 239, 862
BspANI	GGCC	5 cut(s)	102, 146, 365, 500, 1077
BspCNI	CTCAG	1 cut(s)	277
BspFNI	CGCG	1 cut(s)	573
BspLI	GGNNCC	1 cut(s)	736
BspPI	GGATC	2 cut(s)	203, 249
BsrDI	GCAATG	1 cut(s)	951
BsrGI	TGTACA	1 cut(s)	434
BsrI	ACTGG	3 cut(s)	762, 834, 937
BssECI	CCNNGG	5 cut(s)	81, 135, 147, 360, 672
BssMI	GATC	4 cut(s)	208, 241, 385, 793
BssSI	CACGAG	1 cut(s)	530
BssT1I	CCWWGG	1 cut(s)	147
Bst2BI	CACGAG	1 cut(s)	530
Bst2UI	CCWGG	4 cut(s)	136, 280, 497, 1079
Bst4CI	ACNGT	3 cut(s)	348, 1016, 1050
Bst6I	CTCTTC	1 cut(s)	219
BstAPI	GCANNNNNTGC	1 cut(s)	962
BstAUI	TGTACA	1 cut(s)	434
BstBAI	YACGTR	1 cut(s)	842
BstC8I	GCNNGC	2 cut(s)	567, 571
BstDEI	CTNAG	2 cut(s)	248, 264
BstDSI	CCRYGG	1 cut(s)	147
BstEII	GGTNACC	2 cut(s)	348, 757
BstF5I	GGATG	6 cut(s)	126, 331, 595, 616, 660, 713
BstFNI	CGCG	1 cut(s)	573
BstKTI	GATC	4 cut(s)	211, 244, 388, 796
BstMBI	GATC	4 cut(s)	208, 241, 385, 793
BstMWI	GCNNNNNNNGC	2 cut(s)	77, 962
BstNI	CCWGG	4 cut(s)	136, 280, 497, 1079
BstNSI	RCATGY	1 cut(s)	25
BstPI	GGTNACC	2 cut(s)	348, 757
BstSCI	CCNGG	6 cut(s)	80, 81, 134, 278, 495, 1077
BstSFI	CTRYAG	1 cut(s)	177
BstUI	CGCG	1 cut(s)	573
BstV1I	GCAGC	2 cut(s)	792, 1110
BstV2I	GAAGAC	2 cut(s)	100, 983
BstX2I	RGATCY	1 cut(s)	793
BstYI	RGATCY	1 cut(s)	793
BsuI	GTATCC	1 cut(s)	276
BsuRI	GGCC	5 cut(s)	102, 146, 365, 500, 1077
BtgI	CCRYGG	1 cut(s)	147
BtsCI	GGATG	6 cut(s)	126, 331, 595, 616, 660, 713
BtsI	GCAGTG	2 cut(s)	66, 386
BtsIMutI	CAGTG	2 cut(s)	66, 386
Cac8I	GCNNGC	2 cut(s)	567, 571
Cfr13I	GGNCC	2 cut(s)	101, 775
Cfr9I	CCCGGG	1 cut(s)	81
CseI	GACGC	2 cut(s)	562, 684
Csp6I	GTAC	3 cut(s)	435, 1046, 1131
CviAII	CATG	3 cut(s)	22, 148, 1134
CviQI	GTAC	3 cut(s)	435, 1046, 1131
DdeI	CTNAG	2 cut(s)	248, 264
DpnI	GATC	4 cut(s)	210, 243, 387, 795
DpnII	GATC	4 cut(s)	208, 241, 385, 793
DraIII	CACNNNGTG	1 cut(s)	305
EaeI	YGGCCR	1 cut(s)	498
Eam1104I	CTCTTC	1 cut(s)	219
EarI	CTCTTC	1 cut(s)	219
Ecl136II	GAGCTC	1 cut(s)	31
Eco130I	CCWWGG	1 cut(s)	147
Eco24I	GRGCYC	1 cut(s)	33
Eco32I	GATATC	1 cut(s)	969
Eco47I	GGWCC	1 cut(s)	775
Eco53kI	GAGCTC	1 cut(s)	31
Eco88I	CYCGRG	3 cut(s)	81, 359, 671
Eco91I	GGTNACC	2 cut(s)	348, 757
EcoICRI	GAGCTC	1 cut(s)	31
EcoO65I	GGTNACC	2 cut(s)	348, 757
EcoRII	CCWGG	4 cut(s)	134, 278, 495, 1077
EcoRV	GATATC	1 cut(s)	969
EcoT14I	CCWWGG	1 cut(s)	147
EcoT22I	ATGCAT	1 cut(s)	817
EcoT38I	GRGCYC	1 cut(s)	33
ErhI	CCWWGG	1 cut(s)	147
FaeI	CATG	3 cut(s)	25, 151, 1137
FaqI	GGGAC	1 cut(s)	98
FatI	CATG	3 cut(s)	21, 147, 1133
FauI	CCCGC	2 cut(s)	85, 855
Fnu4HI	GCNGC	2 cut(s)	806, 1124
FokI	GGATG	6 cut(s)	113, 338, 602, 623, 667, 700
FriOI	GRGCYC	1 cut(s)	33
Fsp4HI	GCNGC	2 cut(s)	806, 1124
FspBI	CTAG	2 cut(s)	450, 797
GluI	GCNGC	2 cut(s)	806, 1124
GsaI	CCCAGC	1 cut(s)	993
GsuI	CTGGAG	1 cut(s)	106
HaeIII	GGCC	5 cut(s)	102, 146, 365, 500, 1077
HapII	CCGG	2 cut(s)	82, 336
HgaI	GACGC	2 cut(s)	562, 684
Hin1II	CATG	3 cut(s)	25, 151, 1137
HincII	GTYRAC	2 cut(s)	895, 942
HindII	GTYRAC	2 cut(s)	895, 942
HinfI	GANTC	4 cut(s)	94, 446, 661, 705
HpaII	CCGG	2 cut(s)	82, 336
HphI	GGTGA	2 cut(s)	317, 985
Hpy166II	GTNNAC	3 cut(s)	299, 895, 942
Hpy188I	TCNGA	2 cut(s)	28, 267
Hpy188III	TCNNGA	5 cut(s)	359, 410, 532, 577, 797
Hpy8I	GTNNAC	3 cut(s)	299, 895, 942
Hpy99I	CGWCG	1 cut(s)	66
HpyAV	CCTTC	4 cut(s)	136, 333, 365, 580
HpyCH4III	ACNGT	3 cut(s)	348, 1016, 1050
HpyCH4IV	ACGT	3 cut(s)	786, 841, 1029
HpyCH4V	TGCA	7 cut(s)	379, 419, 569, 658, 815, 826, 956
HpyF10VI	GCNNNNNNNGC	2 cut(s)	77, 962
HpyF3I	CTNAG	2 cut(s)	248, 264
HpySE526I	ACGT	3 cut(s)	786, 841, 1029
Hsp92II	CATG	3 cut(s)	25, 151, 1137
Kzo9I	GATC	4 cut(s)	208, 241, 385, 793
Lsp1109I	GCAGC	2 cut(s)	792, 1110
LweI	GCATC	5 cut(s)	135, 645, 792, 802, 965
MaeI	CTAG	2 cut(s)	450, 797
MaeII	ACGT	3 cut(s)	786, 841, 1029
MaeIII	GTNAC	5 cut(s)	181, 348, 757, 764, 842
MalI	GATC	4 cut(s)	210, 243, 387, 795
MboI	GATC	4 cut(s)	208, 241, 385, 793
MflI	RGATCY	1 cut(s)	793
MhlI	GDGCHC	1 cut(s)	33
MlsI	TGGCCA	1 cut(s)	500
MluCI	AATT	3 cut(s)	157, 164, 601
MluI	ACGCGT	1 cut(s)	571
MluNI	TGGCCA	1 cut(s)	500
MmeI	TCCRAC	1 cut(s)	588
Mox20I	TGGCCA	1 cut(s)	500
Mph1103I	ATGCAT	1 cut(s)	817
MroXI	GAANNNNTTC	1 cut(s)	927
MscI	TGGCCA	1 cut(s)	500
MseI	TTAA	5 cut(s)	156, 641, 1005, 1026, 1032
Msp20I	TGGCCA	1 cut(s)	500
MspI	CCGG	2 cut(s)	82, 336
MspR9I	CCNGG	6 cut(s)	82, 83, 136, 280, 497, 1079
MvaI	CCWGG	4 cut(s)	136, 280, 497, 1079
MvnI	CGCG	1 cut(s)	573
MwoI	GCNNNNNNNGC	2 cut(s)	77, 962
NciI	CCSGG	2 cut(s)	82, 83
NcoI	CCATGG	1 cut(s)	147
NdeII	GATC	4 cut(s)	208, 241, 385, 793
NlaIII	CATG	3 cut(s)	25, 151, 1137
NlaIV	GGNNCC	1 cut(s)	736
NmeAIII	GCCGAG	1 cut(s)	78
NsiI	ATGCAT	1 cut(s)	817
NspI	RCATGY	1 cut(s)	25
PdmI	GAANNNNTTC	1 cut(s)	927
PfeI	GAWTC	4 cut(s)	94, 446, 661, 705
PfoI	TCCNGGA	1 cut(s)	278
PkrI	GCNGC	2 cut(s)	807, 1125
Ppu21I	YACGTR	1 cut(s)	842
PsiI	TTATAA	1 cut(s)	170
Psp124BI	GAGCTC	1 cut(s)	33
Psp1406I	AACGTT	1 cut(s)	1029
Psp6I	CCWGG	4 cut(s)	134, 278, 495, 1077
PspEI	GGTNACC	2 cut(s)	348, 757
PspFI	CCCAGC	1 cut(s)	989
PspGI	CCWGG	4 cut(s)	134, 278, 495, 1077
PspN4I	GGNNCC	1 cut(s)	736
PspPI	GGNCC	2 cut(s)	101, 775
PsuI	RGATCY	1 cut(s)	793
RsaI	GTAC	3 cut(s)	436, 1047, 1132
RsaNI	GTAC	3 cut(s)	435, 1046, 1131
SacI	GAGCTC	1 cut(s)	33
SaqAI	TTAA	5 cut(s)	156, 641, 1005, 1026, 1032
SatI	GCNGC	2 cut(s)	806, 1124
Sau3AI	GATC	4 cut(s)	208, 241, 385, 793
Sau96I	GGNCC	2 cut(s)	101, 775
ScrFI	CCNGG	6 cut(s)	82, 83, 136, 280, 497, 1079
SduI	GDGCHC	1 cut(s)	33
SfaNI	GCATC	5 cut(s)	135, 645, 792, 802, 965
SfcI	CTRYAG	1 cut(s)	177
SinI	GGWCC	1 cut(s)	775
SmaI	CCCGGG	1 cut(s)	83
SmlI	CTYRAG	2 cut(s)	88, 464
SmoI	CTYRAG	2 cut(s)	88, 464
Sse9I	AATT	3 cut(s)	157, 164, 601
SsiI	CCGC	3 cut(s)	78, 239, 862
SspI	AATATT	1 cut(s)	1023
SspMI	CTAG	2 cut(s)	450, 797
SstI	GAGCTC	1 cut(s)	33
StyD4I	CCNGG	6 cut(s)	80, 81, 134, 278, 495, 1077
StyI	CCWWGG	1 cut(s)	147
TaaI	ACNGT	3 cut(s)	348, 1016, 1050
TaiI	ACGT	3 cut(s)	789, 844, 1032
TaqI	TCGA	3 cut(s)	217, 597, 983
TasI	AATT	3 cut(s)	157, 164, 601
TatI	WGTACW	1 cut(s)	434
TfiI	GAWTC	4 cut(s)	94, 446, 661, 705
Tru1I	TTAA	5 cut(s)	156, 641, 1005, 1026, 1032
Tru9I	TTAA	5 cut(s)	156, 641, 1005, 1026, 1032
TscAI	CASTG	2 cut(s)	73, 386
TseI	GCWGC	2 cut(s)	805, 1123
TspDTI	ATGAA	4 cut(s)	599, 606, 633, 936
TspGWI	ACGGA	1 cut(s)	896
TspMI	CCCGGG	1 cut(s)	81
TspRI	CASTG	2 cut(s)	73, 386
VpaK11BI	GGWCC	1 cut(s)	775
XapI	RAATTY	2 cut(s)	164, 601
XbaI	TCTAGA	1 cut(s)	796
XceI	RCATGY	1 cut(s)	25
XcmI	CCANNNNNNNNNTGG	1 cut(s)	769
XmaI	CCCGGG	1 cut(s)	81
XmnI	GAANNNNTTC	1 cut(s)	927
XspI	CTAG	2 cut(s)	450, 797
Zsp2I	ATGCAT	1 cut(s)	817

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.