Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004630

Physical Location & Seq

Genomic Coordinates Reverse (-)

2486971 .. 2488320

Gene Structure 1350 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22120

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGGGAAGGGTCCTTGGAACAACAGTTTGGCTGTGAATGGCAAGAAGAAGGCTGGGGGAGCCAGGCTGTGGATGCGCTTAGATTGCTGTCGCCGTTCCGAGCTAGAGGTTCTCCCATTTCCGGATCAGCTAAGACAACAACTGCTTTCTCATAAAACCCAATCAGGGCAATGGTTACCTGTTCTAGAGGTCGTTGAAGGTTTACAATGTGATCTCCCATTTGAGTTTCAGGTTCTGGAGATTGCTCTAGAACATAAAACCCAATCAGGGCAATGGTTACCTGTTTCAGAGGTCGTTGAAGGTTTGCAATGTGATCTCCCATTTGAGTTTCAGACCTTAAGATGGAAGCTTACCATGTGCTCGATGAACTGGCCAGAAATGTTACCACCAAGAATCTTGAACTTGTTCACATGCAGTTTGAAAAGCACTCTCACCCGTTTGCTTGCACGAGTACAACAGGTGAGGGATGAAATTGAACATTTATTGGATGACAATGAAGACATGGCACATTTATATTTGACAAGAAAGTGGATTCAGAATCAACAATCTGAGGCTTTGTTGGCGCGTTCTGGCTCAAATAGCATCAGCCCACTGCCCCAGTCATCGTTGGCTAAGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0007275 GO:0008150 GO:0008324 GO:0009555 GO:0015075 GO:0015095 GO:0015318 GO:0015693 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0032501 GO:0032502 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1903830

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CorA

Protein Analysis

206

Amino Acids

23.66

Weight (kDa)

6.43

Isoelectric Point (pI)

64.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004630)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58970
fragaria_vesca	FvH4_5g28740 FvH4_5g28740 FvH4_5g28740 FvH4_5g28740 FvH4_5g28740 FvH4_5g28740
malus_domestica	MD08G1238500.v1.1 MD08G1238700.v1.1 MD15G1430500.v1.1
prunus_persica	Prupe.1G575700_v2.0.a1
pyrus_communis	pycom08g20700 pycom08g20720 pycom15g38020 pycom420g00390 pycom420g00500 pycom420g00530
rosa_chinensis	RchiOBHm_Chr1g0372101 RchiOBHm_Chr6g0246761
rosa_laevigata	RLG00000015250 RLG00000026923
rosa_multiflora	Rmu_sc0001755.1_g000027 Rmu_sc0003131.1_g000033
rosa_roxburghii	Rroxscaffold_4G00285260 Rroxscaffold_7G00214470
rosa_rugosa	Rorug01G0369700
rosa_samantha	Rh1AG378000 Rh1BG341400 Rh1CG354800 Rh1DG372500
rosa_wichuraiana	Rw1G033260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	69
AccII	CGCG	1 cut(s)	565
AccIII	TCCGGA	1 cut(s)	121
AclWI	GGATC	1 cut(s)	132
AcoI	YGGCCR	1 cut(s)	371
AfaI	GTAC	1 cut(s)	453
AfiI	CCNNNNNNNGG	5 cut(s)	69, 121, 165, 267, 342
AflII	CTTAAG	1 cut(s)	337
AgsI	TTSAA	5 cut(s)	197, 299, 400, 421, 476
AjnI	CCWGG	1 cut(s)	62
AjuI	GAANNNNNNNTTGG	2 cut(s)	11, 43
AluBI	AGCT	3 cut(s)	103, 130, 349
AluI	AGCT	3 cut(s)	103, 130, 349
Alw21I	GWGCWC	1 cut(s)	362
AlwI	GGATC	1 cut(s)	132
AlwNI	CAGNNNCTG	1 cut(s)	235
Aor13HI	TCCGGA	1 cut(s)	121
AoxI	GGCC	1 cut(s)	371
Asp700I	GAANNNNTTC	1 cut(s)	404
AspLEI	GCGC	2 cut(s)	78, 565
AspS9I	GGNCC	1 cut(s)	11
AsuHPI	GGTGA	2 cut(s)	424, 472
AvaII	GGWCC	1 cut(s)	11
BalI	TGGCCA	1 cut(s)	373
BauI	CACGAG	1 cut(s)	447
BbsI	GAAGAC	1 cut(s)	504
Bbv12I	GWGCWC	1 cut(s)	362
BccI	CCATC	1 cut(s)	336
BceAI	ACGGC	1 cut(s)	78
BciT130I	CCWGG	1 cut(s)	64
BfaI	CTAG	3 cut(s)	104, 185, 248
BfrI	CTTAAG	1 cut(s)	337
Bme1390I	CCNGG	1 cut(s)	64
Bme18I	GGWCC	1 cut(s)	11
BmgT120I	GGNCC	1 cut(s)	11
BmiI	GGNNCC	2 cut(s)	12, 61
BmrFI	CCNGG	1 cut(s)	64
BmrI	ACTGGG	1 cut(s)	592
BmsI	GCATC	2 cut(s)	63, 591
BmuI	ACTGGG	1 cut(s)	592
BpiI	GAAGAC	1 cut(s)	504
BpmI	CTGGAG	1 cut(s)	257
BsaJI	CCNNGG	1 cut(s)	14
BsaWI	WCCGGW	1 cut(s)	121
Bsc4I	CCNNNNNNNGG	5 cut(s)	69, 121, 165, 267, 342
Bse1I	ACTGG	2 cut(s)	374, 598
Bse3DI	GCAATG	3 cut(s)	176, 278, 314
BseAI	TCCGGA	1 cut(s)	121
BseBI	CCWGG	1 cut(s)	64
BseDI	CCNNGG	1 cut(s)	14
BseGI	GGATG	3 cut(s)	78, 472, 493
BseLI	CCNNNNNNNGG	5 cut(s)	69, 121, 165, 267, 342
BseMI	GCAATG	3 cut(s)	176, 278, 314
BseMII	CTCAG	1 cut(s)	540
BseNI	ACTGG	2 cut(s)	374, 598
BseYI	CCCAGC	1 cut(s)	53
Bsh1236I	CGCG	1 cut(s)	565
BshFI	GGCC	1 cut(s)	373
BsiHKAI	GWGCWC	1 cut(s)	362
BsiSI	CCGG	1 cut(s)	122
BslI	CCNNNNNNNGG	5 cut(s)	69, 121, 165, 267, 342
BsnI	GGCC	1 cut(s)	373
Bsp1286I	GDGCHC	1 cut(s)	362
Bsp13I	TCCGGA	1 cut(s)	121
Bsp143I	GATC	3 cut(s)	124, 211, 313
BspANI	GGCC	1 cut(s)	373
BspCNI	CTCAG	1 cut(s)	541
BspEI	TCCGGA	1 cut(s)	121
BspFNI	CGCG	1 cut(s)	565
BspLI	GGNNCC	2 cut(s)	12, 61
BspPI	GGATC	1 cut(s)	132
BspTI	CTTAAG	1 cut(s)	337
BsrDI	GCAATG	3 cut(s)	176, 278, 314
BsrI	ACTGG	2 cut(s)	374, 598
BssECI	CCNNGG	1 cut(s)	14
BssMI	GATC	3 cut(s)	124, 211, 313
BssSI	CACGAG	1 cut(s)	447
BssT1I	CCWWGG	1 cut(s)	14
Bst2BI	CACGAG	1 cut(s)	447
Bst2UI	CCWGG	1 cut(s)	64
Bst4CI	ACNGT	1 cut(s)	26
BstAFI	CTTAAG	1 cut(s)	337
BstC8I	GCNNGC	1 cut(s)	444
BstDEI	CTNAG	4 cut(s)	79, 131, 549, 612
BstEII	GGTNACC	2 cut(s)	174, 276
BstF5I	GGATG	3 cut(s)	78, 472, 493
BstFNI	CGCG	1 cut(s)	565
BstHHI	GCGC	2 cut(s)	78, 565
BstKTI	GATC	3 cut(s)	127, 214, 316
BstMBI	GATC	3 cut(s)	124, 211, 313
BstMWI	GCNNNNNNNGC	5 cut(s)	59, 73, 84, 560, 579
BstNI	CCWGG	1 cut(s)	64
BstNSI	RCATGY	1 cut(s)	414
BstPI	GGTNACC	2 cut(s)	174, 276
BstSCI	CCNGG	1 cut(s)	62
BstUI	CGCG	1 cut(s)	565
BstV2I	GAAGAC	1 cut(s)	504
BsuRI	GGCC	1 cut(s)	373
BtsCI	GGATG	3 cut(s)	78, 472, 493
BtsI	GCAGTG	1 cut(s)	590
BtsIMutI	CAGTG	1 cut(s)	590
Cac8I	GCNNGC	1 cut(s)	444
CaiI	CAGNNNCTG	1 cut(s)	235
CfoI	GCGC	2 cut(s)	78, 565
Cfr13I	GGNCC	1 cut(s)	11
Csp6I	GTAC	1 cut(s)	452
CviAII	CATG	3 cut(s)	355, 411, 502
CviQI	GTAC	1 cut(s)	452
DdeI	CTNAG	4 cut(s)	79, 131, 549, 612
DpnI	GATC	3 cut(s)	126, 213, 315
DpnII	GATC	3 cut(s)	124, 211, 313
EaeI	YGGCCR	1 cut(s)	371
Eco130I	CCWWGG	1 cut(s)	14
Eco47I	GGWCC	1 cut(s)	11
Eco91I	GGTNACC	2 cut(s)	174, 276
EcoO109I	RGGNCCY	1 cut(s)	11
EcoO65I	GGTNACC	2 cut(s)	174, 276
EcoRII	CCWGG	1 cut(s)	62
EcoT14I	CCWWGG	1 cut(s)	14
ErhI	CCWWGG	1 cut(s)	14
FaeI	CATG	3 cut(s)	358, 414, 505
FaiI	YATR	6 cut(s)	153, 255, 356, 412, 503, 514
FatI	CATG	3 cut(s)	354, 410, 501
FokI	GGATG	3 cut(s)	85, 479, 500
FspBI	CTAG	3 cut(s)	104, 185, 248
GlaI	GCGC	2 cut(s)	77, 564
GsaI	CCCAGC	1 cut(s)	57
GsuI	CTGGAG	1 cut(s)	257
HaeIII	GGCC	1 cut(s)	373
HapII	CCGG	1 cut(s)	122
HhaI	GCGC	2 cut(s)	78, 565
Hin1II	CATG	3 cut(s)	358, 414, 505
Hin6I	GCGC	2 cut(s)	76, 563
HinP1I	GCGC	2 cut(s)	76, 563
HindIII	AAGCTT	1 cut(s)	347
HinfI	GANTC	3 cut(s)	393, 532, 538
HpaII	CCGG	1 cut(s)	122
HphI	GGTGA	2 cut(s)	424, 472
Hpy166II	GTNNAC	2 cut(s)	203, 408
Hpy188I	TCNGA	5 cut(s)	100, 289, 333, 537, 550
Hpy188III	TCNNGA	5 cut(s)	122, 185, 236, 248, 397
Hpy8I	GTNNAC	2 cut(s)	203, 408
HpyAV	CCTTC	3 cut(s)	43, 191, 293
HpyCH4III	ACNGT	1 cut(s)	26
HpyCH4V	TGCA	3 cut(s)	307, 414, 446
HpyF10VI	GCNNNNNNNGC	5 cut(s)	59, 73, 84, 560, 579
HpyF3I	CTNAG	4 cut(s)	79, 131, 549, 612
Hsp92II	CATG	3 cut(s)	358, 414, 505
HspAI	GCGC	2 cut(s)	76, 563
Kpn2I	TCCGGA	1 cut(s)	121
Kzo9I	GATC	3 cut(s)	124, 211, 313
LmnI	GCTCC	1 cut(s)	59
LweI	GCATC	2 cut(s)	63, 591
MaeI	CTAG	3 cut(s)	104, 185, 248
MaeIII	GTNAC	3 cut(s)	174, 276, 381
MalI	GATC	3 cut(s)	126, 213, 315
MboI	GATC	3 cut(s)	124, 211, 313
MboII	GAAGA	2 cut(s)	58, 509
MhlI	GDGCHC	1 cut(s)	362
MlsI	TGGCCA	1 cut(s)	373
MluCI	AATT	1 cut(s)	471
MluNI	TGGCCA	1 cut(s)	373
MnlI	CCTC	5 cut(s)	100, 181, 283, 456, 544
Mox20I	TGGCCA	1 cut(s)	373
MroI	TCCGGA	1 cut(s)	121
MroXI	GAANNNNTTC	1 cut(s)	404
MscI	TGGCCA	1 cut(s)	373
MseI	TTAA	1 cut(s)	338
Msp20I	TGGCCA	1 cut(s)	373
MspCI	CTTAAG	1 cut(s)	337
MspI	CCGG	1 cut(s)	122
MspR9I	CCNGG	1 cut(s)	64
MvaI	CCWGG	1 cut(s)	64
MvnI	CGCG	1 cut(s)	565
MwoI	GCNNNNNNNGC	5 cut(s)	59, 73, 84, 560, 579
NdeII	GATC	3 cut(s)	124, 211, 313
NlaIII	CATG	3 cut(s)	358, 414, 505
NlaIV	GGNNCC	2 cut(s)	12, 61
NspI	RCATGY	1 cut(s)	414
PdmI	GAANNNNTTC	1 cut(s)	404
PfeI	GAWTC	3 cut(s)	393, 532, 538
PflMI	CCANNNNNTGG	1 cut(s)	69
PpuMI	RGGWCCY	1 cut(s)	11
Psp5II	RGGWCCY	1 cut(s)	11
Psp6I	CCWGG	1 cut(s)	62
PspEI	GGTNACC	2 cut(s)	174, 276
PspFI	CCCAGC	1 cut(s)	53
PspGI	CCWGG	1 cut(s)	62
PspN4I	GGNNCC	2 cut(s)	12, 61
PspPI	GGNCC	1 cut(s)	11
PspPPI	RGGWCCY	1 cut(s)	11
PstNI	CAGNNNCTG	1 cut(s)	235
RsaI	GTAC	1 cut(s)	453
RsaNI	GTAC	1 cut(s)	452
SaqAI	TTAA	1 cut(s)	338
Sau3AI	GATC	3 cut(s)	124, 211, 313
Sau96I	GGNCC	1 cut(s)	11
ScrFI	CCNGG	1 cut(s)	64
SduI	GDGCHC	1 cut(s)	362
SfaNI	GCATC	2 cut(s)	63, 591
SinI	GGWCC	1 cut(s)	11
SmlI	CTYRAG	1 cut(s)	337
SmoI	CTYRAG	1 cut(s)	337
Sse9I	AATT	1 cut(s)	471
SspMI	CTAG	3 cut(s)	104, 185, 248
StyD4I	CCNGG	1 cut(s)	62
StyI	CCWWGG	1 cut(s)	14
TaaI	ACNGT	1 cut(s)	26
TaqI	TCGA	1 cut(s)	362
TasI	AATT	1 cut(s)	471
TatI	WGTACW	1 cut(s)	451
TfiI	GAWTC	3 cut(s)	393, 532, 538
Tru1I	TTAA	1 cut(s)	338
Tru9I	TTAA	1 cut(s)	338
TscAI	CASTG	1 cut(s)	597
TspDTI	ATGAA	3 cut(s)	380, 483, 510
TspRI	CASTG	1 cut(s)	597
Van91I	CCANNNNNTGG	1 cut(s)	69
Vha464I	CTTAAG	1 cut(s)	337
VpaK11BI	GGWCC	1 cut(s)	11
XbaI	TCTAGA	2 cut(s)	184, 247
XceI	RCATGY	1 cut(s)	414
XmnI	GAANNNNTTC	1 cut(s)	404
XspI	CTAG	3 cut(s)	104, 185, 248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.