Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0002312

Physical Location & Seq

Genomic Coordinates Reverse (-)

19916958 .. 19917305

Gene Structure 348 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g28761.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGTCAGATCCTATGAGTGACATGGTTTCGGACTCCATCATGGCTTTAATTTTGAATATCAACAGAGAAGTCCCCAAGGTAGTCATTGAATCCAAGGACATAAAAACAGAGGAAGAGAATGGGAAGAAAACAGAAAAGGTCATTCATGCACTTCTTGTATCACTCTTTGGGGATGTGAAGCCTGGAGAAAATGGGAAGTTGGTGATCAGTGTTGATGGAAATGTGGCACTGCTTGATAAACAGAGTGGGGACGTTGAGAGTGAAAATGAAGGCCTCAAGGAAAGAGTAAAGACAGCATTTCGTCGTATCCAAAGTGCAGTGAAGCCAATTTTTCTTTCTGCGTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016073 GO:0016180 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

Beta-Casp CPSF73-100_C Lactamase_B Lactamase_B_6 RMMBL

Protein Analysis

116

Amino Acids

12.57

Weight (kDa)

5.21

Isoelectric Point (pI)

47.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CPSF73-100_C	PF11718	2 - 109	1.1e-18	Pre-mRNA 3'-end-processing endonuclease polyadenylation factor C-term

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61010 AT1G61010 AT1G61010 AT1G61010 AT1G61010
fragaria_vesca	FvH4_4g07000 FvH4_4g07000 FvH4_5g28761 FvH4_5g28770 FvH4_7g26770
malus_domestica	MD08G1237400.v1.1 MD15G1429300.v1.1
prunus_persica	Prupe.1G574800_v2.0.a1 Prupe.1G574800_v2.0.a1 Prupe.1G574900_v2.0.a1 Prupe.I006100_v2.0.a1 Prupe.I006100_v2.0.a1 Prupe.I006200_v2.0.a1
pyrus_communis	pycom08g20590 pycom08g20600 pycom15g37980 pycom15g37990
rosa_chinensis	RchiOBHm_Chr1g0363271 RchiOBHm_Chr4g0399131 RchiOBHm_Chr7g0220981
rosa_laevigata	RLG00000002186 RLG00000009298
rosa_multiflora	Rmu_sc0002002.1_g000015 Rmu_sc0002105.1_g000022
rosa_roxburghii	Rroxscaffold_3G00238830 Rroxscaffold_5G00344090
rosa_rugosa	Rorug04G0014100 Rorug07G0199100
rosa_samantha	Rh1DG309200 Rh4BG089900 Rh4DG084500 Rh7AG339000 Rh7BG329800 Rh7CG357100 Rh7DG337800
rosa_wichuraiana	Rw4G007590 Rw7G028840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	2
AgsI	TTSAA	2 cut(s)	55, 89
AjnI	CCWGG	1 cut(s)	181
AjuI	GAANNNNNNNTTGG	1 cut(s)	319
AlwI	GGATC	1 cut(s)	2
AoxI	GGCC	1 cut(s)	271
AsuHPI	GGTGA	1 cut(s)	214
BccI	CCATC	2 cut(s)	44, 209
BciT130I	CCWGG	1 cut(s)	183
BciVI	GTATCC	1 cut(s)	317
BclI	TGATCA	1 cut(s)	204
BfuI	GTATCC	1 cut(s)	317
Bme1390I	CCNGG	1 cut(s)	183
BmrFI	CCNGG	1 cut(s)	183
BpmI	CTGGAG	1 cut(s)	204
BpuEI	CTTGAG	1 cut(s)	260
BsaJI	CCNNGG	2 cut(s)	75, 93
BseBI	CCWGG	1 cut(s)	183
BseDI	CCNNGG	2 cut(s)	75, 93
BseGI	GGATG	1 cut(s)	178
BsgI	GTGCAG	1 cut(s)	336
BshFI	GGCC	1 cut(s)	273
BslFI	GGGAC	2 cut(s)	56, 263
BsmFI	GGGAC	2 cut(s)	56, 263
BsnI	GGCC	1 cut(s)	273
Bsp143I	GATC	2 cut(s)	7, 204
BspANI	GGCC	1 cut(s)	273
BspPI	GGATC	1 cut(s)	2
BssECI	CCNNGG	2 cut(s)	75, 93
BssMI	GATC	2 cut(s)	7, 204
BssT1I	CCWWGG	2 cut(s)	75, 93
Bst2UI	CCWGG	1 cut(s)	183
Bst6I	CTCTTC	1 cut(s)	108
BstF5I	GGATG	1 cut(s)	178
BstKTI	GATC	2 cut(s)	10, 207
BstMBI	GATC	2 cut(s)	7, 204
BstNI	CCWGG	1 cut(s)	183
BstSCI	CCNGG	1 cut(s)	181
BstX2I	RGATCY	1 cut(s)	7
BstYI	RGATCY	1 cut(s)	7
BsuI	GTATCC	1 cut(s)	317
BsuRI	GGCC	1 cut(s)	273
BtsCI	GGATG	1 cut(s)	178
BtsI	GCAGTG	2 cut(s)	227, 324
BtsIMutI	CAGTG	3 cut(s)	214, 227, 324
CseI	GACGC	1 cut(s)	330
CviAII	CATG	3 cut(s)	22, 40, 146
CviJI	RGCY	4 cut(s)	44, 181, 273, 325
CviKI_1	RGCY	4 cut(s)	44, 181, 273, 325
DpnI	GATC	2 cut(s)	9, 206
DpnII	GATC	2 cut(s)	7, 204
Eam1104I	CTCTTC	1 cut(s)	108
EarI	CTCTTC	1 cut(s)	108
Eco130I	CCWWGG	2 cut(s)	75, 93
Eco147I	AGGCCT	1 cut(s)	273
EcoRII	CCWGG	1 cut(s)	181
EcoT14I	CCWWGG	2 cut(s)	75, 93
ErhI	CCWWGG	2 cut(s)	75, 93
FaeI	CATG	3 cut(s)	25, 43, 149
FaiI	YATR	5 cut(s)	14, 23, 41, 101, 147
FaqI	GGGAC	2 cut(s)	56, 263
FatI	CATG	3 cut(s)	21, 39, 145
FbaI	TGATCA	1 cut(s)	204
FokI	GGATG	1 cut(s)	185
GsuI	CTGGAG	1 cut(s)	204
HaeIII	GGCC	1 cut(s)	273
HgaI	GACGC	1 cut(s)	330
Hin1II	CATG	3 cut(s)	25, 43, 149
HinfI	GANTC	2 cut(s)	32, 89
HphI	GGTGA	1 cut(s)	214
Hpy188I	TCNGA	2 cut(s)	7, 31
Hpy99I	CGWCG	2 cut(s)	306, 346
HpyAV	CCTTC	1 cut(s)	263
HpyCH4IV	ACGT	1 cut(s)	252
HpyCH4V	TGCA	2 cut(s)	149, 317
HpySE526I	ACGT	1 cut(s)	252
Hsp92II	CATG	3 cut(s)	25, 43, 149
Ksp22I	TGATCA	1 cut(s)	204
Kzo9I	GATC	2 cut(s)	7, 204
LpnPI	CCDG	2 cut(s)	168, 195
MaeII	ACGT	1 cut(s)	252
MaeIII	GTNAC	1 cut(s)	17
MalI	GATC	2 cut(s)	9, 206
MboI	GATC	2 cut(s)	7, 204
MboII	GAAGA	2 cut(s)	125, 136
MflI	RGATCY	1 cut(s)	7
MluCI	AATT	2 cut(s)	48, 327
MlyI	GAGTC	1 cut(s)	26
MnlI	CCTC	2 cut(s)	103, 284
MseI	TTAA	1 cut(s)	47
MspR9I	CCNGG	1 cut(s)	183
MvaI	CCWGG	1 cut(s)	183
NdeII	GATC	2 cut(s)	7, 204
NlaIII	CATG	3 cut(s)	25, 43, 149
NmuCI	GTSAC	1 cut(s)	17
PceI	AGGCCT	1 cut(s)	273
PfeI	GAWTC	1 cut(s)	89
PleI	GAGTC	1 cut(s)	26
PpsI	GAGTC	1 cut(s)	26
Psp6I	CCWGG	1 cut(s)	181
PspGI	CCWGG	1 cut(s)	181
PsuI	RGATCY	1 cut(s)	7
SaqAI	TTAA	1 cut(s)	47
Sau3AI	GATC	2 cut(s)	7, 204
SchI	GAGTC	1 cut(s)	26
ScrFI	CCNGG	1 cut(s)	183
SetI	ASST	3 cut(s)	81, 141, 255
SmlI	CTYRAG	1 cut(s)	275
SmoI	CTYRAG	1 cut(s)	275
Sse9I	AATT	2 cut(s)	48, 327
SseBI	AGGCCT	1 cut(s)	273
StuI	AGGCCT	1 cut(s)	273
StyD4I	CCNGG	1 cut(s)	181
StyI	CCWWGG	2 cut(s)	75, 93
TaiI	ACGT	1 cut(s)	255
TasI	AATT	2 cut(s)	48, 327
TfiI	GAWTC	1 cut(s)	89
Tru1I	TTAA	1 cut(s)	47
Tru9I	TTAA	1 cut(s)	47
TscAI	CASTG	3 cut(s)	214, 234, 324
TseFI	GTSAC	1 cut(s)	17
Tsp45I	GTSAC	1 cut(s)	17
TspDTI	ATGAA	2 cut(s)	134, 282
TspRI	CASTG	3 cut(s)	214, 234, 324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.