Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0002312

Physical Location & Seq

Genomic Coordinates Reverse (-)

12817516 .. 12823266

Gene Structure 5751 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG084500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1761 bp

ATGACTTATGCAACAAAGGCTATCTATAGGTTGCTTTTGGCAGATTATATGAAAGTGAGCAAAGTTTCAGTTGAAGATATGTTGTTTGATGAGAAGGACATAAATGCTTCTATGGATAAAATTGAGGTTATTGATTTCCACCAAACAGTAGAAGTTGAGGGCATTCGGTTTTGGTGCTACACTGCAGGCCATGTCCTTGGTGCTGCTATGTTCATGGTTGATATTGCCGGTGTTAGGGTCCTCTACACTGGAGATTATTCACGTGAAGAAGACCGACACCTCCATGCTGCTGAGATCCCACAGTTCTCCCCTGATATATGCATCATTGAGTCCACATTTGGTGTCCAGCACCATCAACCTCGAAACGTCCGAGAGAAGCGATTCACTGAAGCTATACACACAGCAATCTCTCGAGGGGGTCGCGTCTTAATTCCTGCATATGCACTTGGCCGTGCCCAAGAACTTCTCCTGATTCTTGATGAGTATTGGTCAAACCATCCAGAGCTTCATAATATTCCTATATATTATGCTTCCCCACTGGCAAAAAAATGTTTGTCTGTTTATGAGACGTACACCCTTTCAATGAATGATAGGATCCGCAATGCCAAGTCAAATCCCTTCATCTTCAACAACATATCACCATTAAACAGCATTGAGAATTTCAAAGATGTGGGCCCCTCGGTGGTGATGGCAAGCCCTGGTACTCTTCAAAGCGGGCTGTCAAGGCAGCTATTTGATAAGTGGTGCTCTGATAAGAGAAATGCGTGTGTGATTCCGGGTTATGTGATTGAGGGGACACTTGCTAAGACAATCATGAATGAACCGAAAGAGGTTACCCTTATGAATGGGCTTGCCGCTCCTCTCAACATGTCAATCCATTACATTTCATTCGCTGCTCATGCAGATTCTGTTCAGACATGTGCATTTTTGGAGGAGCTGAGGCCTCCTAACATAATCCTTGTTCATGGAGAAGCTCATGAGATGGGAAGGCTGAAAGAGAAGCTCATGACTCAATTTCGTGATCGCAACACAAAAATCCTCACACCAAAGAATTGTCAGTCTGTTGAAATGTACTTTAACTCGCAGAAAATGGCTAAAGCTATTGGAAGGCTTGCCGAGAGAACCCCGGAAGTTGGTGAAACAGTCAGCGGTTTAGTGGTTAAAAAAGGCTTCAGTTATCAGATAATGGCTTCTGAAGATCTTCATGTTTTCTCGCAGCTGTCCACGACAAATGTCACTCAACGTATTACTATCCCGTATACTACTGGCTTCATGGTGATAAGACATCGGCTGAGGCAAATGTATGAGAGCGTAGAATCTTCTGTGGATGAGGAATCTGGAGTGCCGATGTTGCGAGTGCATGATCGAGTGACTGTGAGGCAGGATACAGATAAACATGTTTCACTGCATTGGATGTCAGATCCTATAAGTGACATGGTGTCAGACTCCATTGTGGCTCTAATTTTGAATATCAACAGGGAAGTCCCCAAGGTAGTCATTGAATCGGAAGATATAACAACAGAGGAAGAGAATGGGAGGAAGACGGAAAAGGTCATTCGTGCACTTCTTGTATCACTCTTTGGGGATGTGAAGCCTGGAGAAAATGGGAAGTTGGTGATCAGTGTTGATGGAAATGTGGCACAGCTTGATAAACAGAGTGGGGACGTTGAGAGTGAAAATGAAGGCCTCAAGGAAAGAGTAAAGACAGCATTTCGTCGAATCCAAAGTGCGGTGAAGCCAATTCCTCTTTCTTCATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016073 GO:0016180 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

Beta-Casp CPSF73-100_C Lactamase_B Lactamase_B_6 RMMBL

Protein Analysis

586

Amino Acids

66.0

Weight (kDa)

6.09

Isoelectric Point (pI)

43.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lactamase_B_6	PF16661	3 - 100	1.7e-10	Metallo-beta-lactamase superfamily domain
Beta-Casp	PF10996	152 - 271	1.1e-29	Beta-Casp domain
RMMBL	PF07521	287 - 339	1.5e-10	Zn-dependent metallo-hydrolase RNA specificity domain
CPSF73-100_C	PF11718	381 - 580	1.7e-51	Pre-mRNA 3'-end-processing endonuclease polyadenylation factor C-term

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61010 AT1G61010 AT1G61010 AT1G61010 AT1G61010
fragaria_vesca	FvH4_4g07000 FvH4_4g07000 FvH4_5g28761 FvH4_5g28770 FvH4_7g26770
malus_domestica	MD08G1237400.v1.1 MD15G1429300.v1.1
prunus_persica	Prupe.1G574800_v2.0.a1 Prupe.1G574800_v2.0.a1 Prupe.1G574900_v2.0.a1 Prupe.I006100_v2.0.a1 Prupe.I006100_v2.0.a1 Prupe.I006200_v2.0.a1
pyrus_communis	pycom08g20590 pycom08g20600 pycom15g37980 pycom15g37990
rosa_chinensis	RchiOBHm_Chr1g0363271 RchiOBHm_Chr4g0399131 RchiOBHm_Chr7g0220981
rosa_laevigata	RLG00000002186 RLG00000009298
rosa_multiflora	Rmu_sc0002002.1_g000015 Rmu_sc0002105.1_g000022
rosa_roxburghii	Rroxscaffold_3G00238830 Rroxscaffold_5G00344090
rosa_rugosa	Rorug04G0014100 Rorug07G0199100
rosa_samantha	Rh1DG309200 Rh4BG089900 Rh4DG084500 Rh7AG339000 Rh7BG329800 Rh7CG357100 Rh7DG337800
rosa_wichuraiana	Rw4G007590 Rw7G028840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	857
AccI	GTMKAC	1 cut(s)	1259
AccII	CGCG	1 cut(s)	423
AciI	CCGC	5 cut(s)	598, 714, 855, 1149, 1730
AclWI	GGATC	4 cut(s)	289, 589, 602, 1415
AcoI	YGGCCR	1 cut(s)	448
AcsI	RAATTY	1 cut(s)	658
AcuI	CTGAAG	3 cut(s)	408, 1156, 1215
AcvI	CACGTG	1 cut(s)	263
AfaI	GTAC	3 cut(s)	572, 703, 1073
AfiI	CCNNNNNNNGG	4 cut(s)	234, 682, 1133, 1729
AflIII	ACRYGT	3 cut(s)	867, 917, 1396
AgsI	TTSAA	8 cut(s)	74, 582, 628, 664, 710, 1067, 1468, 1502
AhdI	GACNNNNNGTC	1 cut(s)	1438
AjnI	CCWGG	2 cut(s)	697, 1594
AjuI	GAANNNNNNNTTGG	1 cut(s)	1732
AluBI	AGCT	9 cut(s)	392, 505, 730, 937, 974, 1003, 1100, 1219, 1645
AluI	AGCT	9 cut(s)	392, 505, 730, 937, 974, 1003, 1100, 1219, 1645
Alw21I	GWGCWC	2 cut(s)	749, 1564
Alw26I	GTCTC	1 cut(s)	560
Alw44I	GTGCAC	1 cut(s)	1560
AlwI	GGATC	4 cut(s)	289, 589, 602, 1415
AlwNI	CAGNNNCTG	1 cut(s)	908
Ama87I	CYCGRG	1 cut(s)	411
AoxI	GGCC	5 cut(s)	187, 448, 673, 941, 1684
ApaI	GGGCCC	1 cut(s)	677
ApaLI	GTGCAC	1 cut(s)	1560
ApeKI	GCWGC	5 cut(s)	203, 287, 727, 893, 1216
ApoI	RAATTY	1 cut(s)	658
Asp700I	GAANNNNTTC	2 cut(s)	380, 1200
AspS9I	GGNCC	3 cut(s)	238, 673, 674
AsuC2I	CCSGG	2 cut(s)	777, 1127
AsuHPI	GGTGA	6 cut(s)	630, 697, 1148, 1288, 1627, 1744
AvaI	CYCGRG	1 cut(s)	411
AvaII	GGWCC	1 cut(s)	238
BaeGI	GKGCMC	3 cut(s)	457, 677, 1564
BamHI	GGATCC	1 cut(s)	594
BanII	GRGCYC	1 cut(s)	677
BbrPI	CACGTG	1 cut(s)	263
BbsI	GAAGAC	2 cut(s)	276, 1547
Bbv12I	GWGCWC	2 cut(s)	749, 1564
BbvCI	CCTCAGC	2 cut(s)	938, 1292
BbvI	GCAGC	5 cut(s)	190, 274, 739, 880, 1228
BccI	CCATC	5 cut(s)	360, 504, 682, 976, 1622
BceAI	ACGGC	1 cut(s)	435
BciT130I	CCWGG	2 cut(s)	699, 1596
BciVI	GTATCC	1 cut(s)	1378
BclI	TGATCA	1 cut(s)	1617
BcnI	CCSGG	2 cut(s)	777, 1127
BcoDI	GTCTC	1 cut(s)	560
BfmI	CTRYAG	2 cut(s)	25, 183
BfuI	GTATCC	1 cut(s)	1378
BglII	AGATCT	1 cut(s)	1198
BisI	GCNGC	6 cut(s)	204, 288, 728, 855, 894, 1217
BlsI	GCNGC	6 cut(s)	205, 289, 729, 856, 895, 1218
Bme1390I	CCNGG	4 cut(s)	699, 777, 1127, 1596
Bme18I	GGWCC	1 cut(s)	238
BmeRI	GACNNNNNGTC	1 cut(s)	1438
BmeT110I	CYCGRG	1 cut(s)	411
BmgT120I	GGNCC	3 cut(s)	238, 673, 674
BmiI	GGNNCC	4 cut(s)	239, 596, 675, 676
BmrFI	CCNGG	4 cut(s)	699, 777, 1127, 1596
BmsI	GCATC	1 cut(s)	330
BoxI	GACNNNNGTC	1 cut(s)	1232
BpiI	GAAGAC	2 cut(s)	276, 1547
BpmI	CTGGAG	3 cut(s)	270, 1359, 1617
Bpu10I	CCTNAGC	2 cut(s)	938, 1292
BpuEI	CTTGAG	1 cut(s)	1673
BpuMI	CCSGG	2 cut(s)	777, 1127
BsaAI	YACGTR	1 cut(s)	263
BsaJI	CCNNGG	5 cut(s)	196, 678, 697, 1125, 1488
Bsc4I	CCNNNNNNNGG	4 cut(s)	234, 682, 1133, 1729
Bse118I	RCCGGY	1 cut(s)	227
Bse1I	ACTGG	3 cut(s)	253, 543, 1270
Bse3DI	GCAATG	1 cut(s)	607
BseBI	CCWGG	2 cut(s)	699, 1596
BseDI	CCNNGG	5 cut(s)	196, 678, 697, 1125, 1488
BseGI	GGATG	4 cut(s)	496, 1333, 1419, 1591
BseLI	CCNNNNNNNGG	4 cut(s)	234, 682, 1133, 1729
BseMI	GCAATG	1 cut(s)	607
BseMII	CTCAG	3 cut(s)	282, 929, 1283
BseNI	ACTGG	3 cut(s)	253, 543, 1270
BseRI	GAGGAG	2 cut(s)	849, 947
BseSI	GKGCMC	3 cut(s)	457, 677, 1564
BseXI	GCAGC	5 cut(s)	190, 274, 739, 880, 1228
Bsh1236I	CGCG	1 cut(s)	423
BshFI	GGCC	5 cut(s)	189, 450, 675, 943, 1686
BsiHKAI	GWGCWC	2 cut(s)	749, 1564
BsiHKCI	CYCGRG	1 cut(s)	411
BsiSI	CCGG	3 cut(s)	228, 776, 1127
BslFI	GGGAC	3 cut(s)	808, 1469, 1676
BslI	CCNNNNNNNGG	4 cut(s)	234, 682, 1133, 1729
BsmAI	GTCTC	1 cut(s)	560
BsmBI	CGTCTC	1 cut(s)	560
BsmFI	GGGAC	3 cut(s)	808, 1469, 1676
BsmI	GAATGC	1 cut(s)	162
BsnI	GGCC	5 cut(s)	189, 450, 675, 943, 1686
BsoBI	CYCGRG	1 cut(s)	411
Bsp120I	GGGCCC	1 cut(s)	673
Bsp1286I	GDGCHC	4 cut(s)	457, 677, 749, 1564
Bsp143I	GATC	7 cut(s)	294, 594, 1021, 1198, 1363, 1420, 1617
BspACI	CCGC	5 cut(s)	598, 714, 855, 1149, 1730
BspANI	GGCC	5 cut(s)	189, 450, 675, 943, 1686
BspCNI	CTCAG	3 cut(s)	283, 930, 1284
BspFNI	CGCG	1 cut(s)	423
BspHI	TCATGA	3 cut(s)	813, 976, 1005
BspLI	GGNNCC	4 cut(s)	239, 596, 675, 676
BspMAI	CTGCAG	1 cut(s)	187
BspPI	GGATC	4 cut(s)	289, 589, 602, 1415
BsrBI	CCGCTC	1 cut(s)	857
BsrDI	GCAATG	1 cut(s)	607
BsrFI	RCCGGY	1 cut(s)	227
BsrI	ACTGG	3 cut(s)	253, 543, 1270
BssAI	RCCGGY	1 cut(s)	227
BssECI	CCNNGG	5 cut(s)	196, 678, 697, 1125, 1488
BssMI	GATC	7 cut(s)	294, 594, 1021, 1198, 1363, 1420, 1617
BssNAI	GTATAC	1 cut(s)	1260
BssT1I	CCWWGG	2 cut(s)	196, 1488
Bst1107I	GTATAC	1 cut(s)	1260
Bst2UI	CCWGG	2 cut(s)	699, 1596
Bst4CI	ACNGT	4 cut(s)	148, 303, 1144, 1375
Bst6I	CTCTTC	2 cut(s)	711, 1521
BstBAI	YACGTR	1 cut(s)	263
BstC8I	GCNNGC	5 cut(s)	187, 694, 716, 852, 1113
BstDEI	CTNAG	5 cut(s)	291, 804, 938, 1292, 1758
BstEII	GGTNACC	1 cut(s)	832
BstF5I	GGATG	4 cut(s)	496, 1333, 1419, 1591
BstFNI	CGCG	1 cut(s)	423
BstKTI	GATC	7 cut(s)	297, 597, 1024, 1201, 1366, 1423, 1620
BstMAI	GTCTC	1 cut(s)	560
BstMBI	GATC	7 cut(s)	294, 594, 1021, 1198, 1363, 1420, 1617
BstMWI	GCNNNNNNNGC	4 cut(s)	17, 724, 899, 1351
BstNI	CCWGG	2 cut(s)	699, 1596
BstNSI	RCATGY	3 cut(s)	871, 921, 1400
BstPAI	GACNNNNGTC	1 cut(s)	1232
BstPI	GGTNACC	1 cut(s)	832
BstSCI	CCNGG	4 cut(s)	697, 775, 1125, 1594
BstSFI	CTRYAG	2 cut(s)	25, 183
BstSLI	GKGCMC	3 cut(s)	457, 677, 1564
BstUI	CGCG	1 cut(s)	423
BstV1I	GCAGC	5 cut(s)	190, 274, 739, 880, 1228
BstV2I	GAAGAC	2 cut(s)	276, 1547
BstX2I	RGATCY	4 cut(s)	294, 594, 1198, 1420
BstXI	CCANNNNNNTGG	1 cut(s)	197
BstYI	RGATCY	4 cut(s)	294, 594, 1198, 1420
BstZ17I	GTATAC	1 cut(s)	1260
BsuI	GTATCC	1 cut(s)	1378
BsuRI	GGCC	5 cut(s)	189, 450, 675, 943, 1686
BtsCI	GGATG	4 cut(s)	496, 1333, 1419, 1591
BtsI	GCAGTG	2 cut(s)	180, 1403
BtsIMutI	CAGTG	6 cut(s)	180, 246, 384, 536, 1403, 1627
Cac8I	GCNNGC	5 cut(s)	187, 694, 716, 852, 1113
CaiI	CAGNNNCTG	1 cut(s)	908
CciI	TCATGA	3 cut(s)	813, 976, 1005
Cfr10I	RCCGGY	1 cut(s)	227
Cfr13I	GGNCC	3 cut(s)	238, 673, 674
CseI	GACGC	1 cut(s)	412
Csp6I	GTAC	3 cut(s)	571, 702, 1072
CviQI	GTAC	3 cut(s)	571, 702, 1072
DdeI	CTNAG	5 cut(s)	291, 804, 938, 1292, 1758
DpnI	GATC	7 cut(s)	296, 596, 1023, 1200, 1365, 1422, 1619
DpnII	GATC	7 cut(s)	294, 594, 1021, 1198, 1363, 1420, 1617
DriI	GACNNNNNGTC	1 cut(s)	1438
EaeI	YGGCCR	1 cut(s)	448
Eam1104I	CTCTTC	2 cut(s)	711, 1521
Eam1105I	GACNNNNNGTC	1 cut(s)	1438
EarI	CTCTTC	2 cut(s)	711, 1521
Eco130I	CCWWGG	2 cut(s)	196, 1488
Eco147I	AGGCCT	2 cut(s)	943, 1686
Eco24I	GRGCYC	1 cut(s)	677
Eco47I	GGWCC	1 cut(s)	238
Eco57I	CTGAAG	3 cut(s)	408, 1156, 1215
Eco72I	CACGTG	1 cut(s)	263
Eco88I	CYCGRG	1 cut(s)	411
Eco91I	GGTNACC	1 cut(s)	832
EcoO109I	RGGNCCY	2 cut(s)	238, 674
EcoO65I	GGTNACC	1 cut(s)	832
EcoRII	CCWGG	2 cut(s)	697, 1594
EcoT14I	CCWWGG	2 cut(s)	196, 1488
EcoT22I	ATGCAT	1 cut(s)	323
EcoT38I	GRGCYC	1 cut(s)	677
ErhI	CCWWGG	2 cut(s)	196, 1488
Esp3I	CGTCTC	1 cut(s)	560
FaqI	GGGAC	3 cut(s)	808, 1469, 1676
FauI	CCCGC	1 cut(s)	707
FauNDI	CATATG	1 cut(s)	439
FbaI	TGATCA	1 cut(s)	1617
FblI	GTMKAC	1 cut(s)	1259
Fnu4HI	GCNGC	6 cut(s)	204, 288, 728, 855, 894, 1217
FokI	GGATG	4 cut(s)	483, 1340, 1426, 1598
FriOI	GRGCYC	1 cut(s)	677
Fsp4HI	GCNGC	6 cut(s)	204, 288, 728, 855, 894, 1217
GluI	GCNGC	6 cut(s)	204, 288, 728, 855, 894, 1217
GsuI	CTGGAG	3 cut(s)	270, 1359, 1617
HaeIII	GGCC	5 cut(s)	189, 450, 675, 943, 1686
HapII	CCGG	3 cut(s)	228, 776, 1127
HgaI	GACGC	1 cut(s)	412
HpaII	CCGG	3 cut(s)	228, 776, 1127
HphI	GGTGA	6 cut(s)	630, 697, 1148, 1288, 1627, 1744
Hpy166II	GTNNAC	5 cut(s)	333, 573, 1224, 1260, 1562
Hpy188I	TCNGA	8 cut(s)	371, 751, 915, 1182, 1195, 1420, 1444, 1507
Hpy188III	TCNNGA	9 cut(s)	411, 469, 476, 500, 814, 977, 1006, 1019, 1338
Hpy8I	GTNNAC	5 cut(s)	333, 573, 1224, 1260, 1562
Hpy99I	CGWCG	1 cut(s)	1719
HpyAV	CCTTC	5 cut(s)	88, 628, 981, 1101, 1676
HpyCH4III	ACNGT	4 cut(s)	148, 303, 1144, 1375
HpyCH4IV	ACGT	5 cut(s)	262, 366, 569, 1243, 1665
HpyF10VI	GCNNNNNNNGC	4 cut(s)	17, 724, 899, 1351
HpyF3I	CTNAG	5 cut(s)	291, 804, 938, 1292, 1758
HpySE526I	ACGT	5 cut(s)	262, 366, 569, 1243, 1665
Ksp22I	TGATCA	1 cut(s)	1617
Kzo9I	GATC	7 cut(s)	294, 594, 1021, 1198, 1363, 1420, 1617
LmnI	GCTCC	2 cut(s)	862, 934
Lsp1109I	GCAGC	5 cut(s)	190, 274, 739, 880, 1228
LweI	GCATC	1 cut(s)	330
MaeII	ACGT	5 cut(s)	262, 366, 569, 1243, 1665
MaeIII	GTNAC	4 cut(s)	832, 1234, 1369, 1430
MalI	GATC	7 cut(s)	296, 596, 1023, 1200, 1365, 1422, 1619
MbiI	CCGCTC	1 cut(s)	857
MboI	GATC	7 cut(s)	294, 594, 1021, 1198, 1363, 1420, 1617
MflI	RGATCY	4 cut(s)	294, 594, 1198, 1420
MhlI	GDGCHC	4 cut(s)	457, 677, 749, 1564
MluCI	AATT	7 cut(s)	120, 429, 658, 1013, 1051, 1461, 1740
MlyI	GAGTC	3 cut(s)	338, 1003, 1439
Mph1103I	ATGCAT	1 cut(s)	323
MroXI	GAANNNNTTC	2 cut(s)	380, 1200
MseI	TTAA	4 cut(s)	428, 644, 1077, 1161
MslI	CAYNNNNRTG	1 cut(s)	282
MspA1I	CMGCKG	2 cut(s)	1149, 1219
MspI	CCGG	3 cut(s)	228, 776, 1127
MspR9I	CCNGG	4 cut(s)	699, 777, 1127, 1596
Mva1269I	GAATGC	1 cut(s)	162
MvaI	CCWGG	2 cut(s)	699, 1596
MvnI	CGCG	1 cut(s)	423
MwoI	GCNNNNNNNGC	4 cut(s)	17, 724, 899, 1351
NciI	CCSGG	2 cut(s)	777, 1127
NdeI	CATATG	1 cut(s)	439
NdeII	GATC	7 cut(s)	294, 594, 1021, 1198, 1363, 1420, 1617
NlaIV	GGNNCC	4 cut(s)	239, 596, 675, 676
NmeAIII	GCCGAG	1 cut(s)	1141
NmuCI	GTSAC	3 cut(s)	1234, 1369, 1430
NsiI	ATGCAT	1 cut(s)	323
NspI	RCATGY	3 cut(s)	871, 921, 1400
PaeR7I	CTCGAG	1 cut(s)	411
PagI	TCATGA	3 cut(s)	813, 976, 1005
PceI	AGGCCT	2 cut(s)	943, 1686
PciI	ACATGT	3 cut(s)	867, 917, 1396
PcsI	WCGNNNNNNNCGW	1 cut(s)	367
PctI	GAATGC	1 cut(s)	162
PdmI	GAANNNNTTC	2 cut(s)	380, 1200
PfeI	GAWTC	8 cut(s)	381, 472, 772, 905, 1316, 1334, 1502, 1719
PkrI	GCNGC	6 cut(s)	205, 289, 729, 856, 895, 1218
PleI	GAGTC	3 cut(s)	337, 1003, 1439
PmaCI	CACGTG	1 cut(s)	263
PmlI	CACGTG	1 cut(s)	263
PpsI	GAGTC	3 cut(s)	337, 1003, 1439
Ppu21I	YACGTR	1 cut(s)	263
PpuMI	RGGWCCY	1 cut(s)	238
PscI	ACATGT	3 cut(s)	867, 917, 1396
PshAI	GACNNNNGTC	1 cut(s)	1232
Psp5II	RGGWCCY	1 cut(s)	238
Psp6I	CCWGG	2 cut(s)	697, 1594
PspCI	CACGTG	1 cut(s)	263
PspEI	GGTNACC	1 cut(s)	832
PspGI	CCWGG	2 cut(s)	697, 1594
PspN4I	GGNNCC	4 cut(s)	239, 596, 675, 676
PspOMI	GGGCCC	1 cut(s)	673
PspPI	GGNCC	3 cut(s)	238, 673, 674
PspPPI	RGGWCCY	1 cut(s)	238
PstI	CTGCAG	1 cut(s)	187
PstNI	CAGNNNCTG	1 cut(s)	908
PsuI	RGATCY	4 cut(s)	294, 594, 1198, 1420
PvuII	CAGCTG	1 cut(s)	1219
RsaI	GTAC	3 cut(s)	572, 703, 1073
RsaNI	GTAC	3 cut(s)	571, 702, 1072
RseI	CAYNNNNRTG	1 cut(s)	282
SaqAI	TTAA	4 cut(s)	428, 644, 1077, 1161
SatI	GCNGC	6 cut(s)	204, 288, 728, 855, 894, 1217
Sau3AI	GATC	7 cut(s)	294, 594, 1021, 1198, 1363, 1420, 1617
Sau96I	GGNCC	3 cut(s)	238, 673, 674
SchI	GAGTC	3 cut(s)	338, 1003, 1439
ScrFI	CCNGG	4 cut(s)	699, 777, 1127, 1596
SduI	GDGCHC	4 cut(s)	457, 677, 749, 1564
SfaNI	GCATC	1 cut(s)	330
SfcI	CTRYAG	2 cut(s)	25, 183
Sfr274I	CTCGAG	1 cut(s)	411
SinI	GGWCC	1 cut(s)	238
SlaI	CTCGAG	1 cut(s)	411
SmiMI	CAYNNNNRTG	1 cut(s)	282
SmlI	CTYRAG	2 cut(s)	411, 1688
SmoI	CTYRAG	2 cut(s)	411, 1688
Sse9I	AATT	7 cut(s)	120, 429, 658, 1013, 1051, 1461, 1740
SseBI	AGGCCT	2 cut(s)	943, 1686
SsiI	CCGC	5 cut(s)	598, 714, 855, 1149, 1730
SspI	AATATT	1 cut(s)	514
StuI	AGGCCT	2 cut(s)	943, 1686
StyD4I	CCNGG	4 cut(s)	697, 775, 1125, 1594
StyI	CCWWGG	2 cut(s)	196, 1488
TaaI	ACNGT	4 cut(s)	148, 303, 1144, 1375
TaiI	ACGT	5 cut(s)	265, 369, 572, 1246, 1668
TaqI	TCGA	4 cut(s)	361, 412, 1366, 1717
TaqII	GACCGA	1 cut(s)	288
TasI	AATT	7 cut(s)	120, 429, 658, 1013, 1051, 1461, 1740
TatI	WGTACW	1 cut(s)	1071
TauI	GCSGC	1 cut(s)	857
TfiI	GAWTC	8 cut(s)	381, 472, 772, 905, 1316, 1334, 1502, 1719
Tru1I	TTAA	4 cut(s)	428, 644, 1077, 1161
Tru9I	TTAA	4 cut(s)	428, 644, 1077, 1161
TscAI	CASTG	6 cut(s)	187, 253, 391, 543, 1410, 1627
TseFI	GTSAC	3 cut(s)	1234, 1369, 1430
TseI	GCWGC	5 cut(s)	203, 287, 727, 893, 1216
Tsp45I	GTSAC	3 cut(s)	1234, 1369, 1430
TspGWI	ACGGA	1 cut(s)	1559
TspRI	CASTG	6 cut(s)	187, 253, 391, 543, 1410, 1627
VneI	GTGCAC	1 cut(s)	1560
VpaK11BI	GGWCC	1 cut(s)	238
XapI	RAATTY	1 cut(s)	658
XceI	RCATGY	3 cut(s)	871, 921, 1400
XhoI	CTCGAG	1 cut(s)	411
XmiI	GTMKAC	1 cut(s)	1259
XmnI	GAANNNNTTC	2 cut(s)	380, 1200
Zsp2I	ATGCAT	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.