Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0002312

Physical Location & Seq

Genomic Coordinates Reverse (-)

15431575 .. 15442258

Gene Structure 10684 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG089900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2406 bp

ATGTCCGACGAGGAGCACCATTTCGAGTCTAAGTCAGTTCGCTCAAGAGGATATGTCTTCTTGAAGAAAGGCGCGGTGGTCGCAGCTACGGCGGTGCTAGTAGAAGAAGCTCTGAGAGTGGGAGCAGTAGGATGCCGGAAGTTGCAGAAGCTCTGGCCGCGAAACTCAACTTTTTTAGGAAAGGCAGTCAAGGAGGAGCTGAGTTTTTCTGTATCTCAAAAACCCCAAAATTTTGACCCCAGTTCGGCTGCCGATTTTAGACGGCTCTACCCATTCCAAGAATTCACGGCTGGGATTAGCAGAAGACTACAATTCAGTTTTACCAAAATGGCTTCGATGGGGGGACAAAAGAGGCGTGAAGCATCATCGTCTTCAGCAGCAAAACAGGAAGATAAGCTGATTGTGACTCCTTTAGGAGGTGGTAGCGAAGTTGGTCGCTCTTGCGTGTACATGTCCTACAAAGGCAAAAATGTCTTGTTTGATTGCGGAATCAATCCCGCTTTCTCGGGCATGGCTGCTTTGCCCTACTTTGATGAGATTGATCCTTCCACAATTGATGTCCTTCTCATAACCCATTTTCACTTGGATCATGCTGCATCCGTACCTTACTTCCTTGAGAAGACCACATTCAAGGGCCGAGTCTTTATGACTTATGCAACAAAGGCTATCTATAGGTTGCTTTTGGCAGATTATATGAAAGTAAGCAAAGTTTCAGTTGAAGATATGTTGTTCGATGAGAAGGACATAACTGCTTCTATGGATAAAATTGAGGTTATTGATTTCCACCAAACAGTAGAAGTTGAGGGCATTCGGTTTTGGTGCTACACTGCAGGTCATGTCCTTGGTGCTGCTATGTTTATGGTTGATATTGCCGGTGTTAGGGTCCTCTACACTGGAGATTATTCACGTGAAGAAGACCGACACCTCCATGCTGCTGAGATGCCACAGTTCTCCCCTGATATATGCATCATTGAGTCCACATTTGGTGTCCAGCACCATCAACCTCGAAACGTCCGAGAGAAGCGATTCACTGAAGCTATACACACAGCAATCTCTCGAGGCGGTCGTGTCTTAATTCCTGCATATGCACTTGGCCGTGCCCAAGAACTTCTCCTGATTCTTGATGAGTATTGGTCAAACCATCCAGAGCTCGATAATATTCCTATATATTATGCCTCCCCACTGGCAAAAAAATGTTTGTCTGTTTATGAGACGTACACCCTTTCAATGAACGATAGGATCCGCAATGCCAAGTCAAATCCCTTCATCTTCAACCACATATCACCGTTAAACAGCATTGAGAATTTCAAAGATGTGGGCCCCTCAGTGGTGATGGCAAGCCCTGGTACTCTTCAAAGCGGGCTGTCAAGGCAGCTATTTGATAAGTGGTGCTCTGATAAGAGAAATGCGTGTGTGATTCCGGGTTATGTGATTGAGGGGACACTTGCTAAGACAATCATGAATGAACCGAAAGAGGTTACCCTTATGAATGGGCTTGCCGCTCCTCTCAACATGTCAATCCATTACATTTCATTCGCTGCTCATGCAGATTCTGTTCAGACATGTGCATTTTTGGAGGAGCTGAGGCCTCCTAACATAATCCTTGTTCATGGAGAAGCTCATGAGATGGGAAGGCTGAAAGAGAAGCTCATAACTCAATTTCGTGATCGCAACACAAAAATCCTCACACCAAAGAATTGTCAGTCTGTTGAAATGTATTTTAACTCGCAGAAAATGGCTAAAGCTATTGGAAGGCTTGCTGAGAGAACCCCGGAAGTTGGTGAAACAGTCAGTGGTTTACTGGTTAAAAAAGGTTTCAGTTATCAGATAATGGCCTCTGAAGATCTTCATGTGTTCTCACAGCTGTCCACGGCAAATGTCACTCAACGTATTACTATCCCGTATACTACTGGCTTCATGGTGATAAGACATCGGCTGAGGCAAATGTATGAGAGCGTAGAATCTTCTGTGGATGAGGAATCTGGAGTGCCGACGTTGCGAGTGCATGATCGAGTGACTGTGAGGCAGGATACAGATAAACATGTTTCACTGCATTGGATGTCAGATCCTATAAGTGACATGGTGTCAGACTCCATTGTGGCTCTAATTTTGAATATCAACAGAGAAGTCCCCAAGGTAGTCATTGAATCGGAAGATATAACAACAGAGGAAGAGAATGGGAGGAAGACGGAAAAGGTCATTCGTGCACTTCTTGTATCACTCTTTGGGGATGTGAAGCCTGGAGAAAATGGGAAGTTGGTGATCAGTGTTGATGGAAATGTGGCGCAGCTTGATAAACAGAGTGGGAACGTTGAAAGTGAAAATGAAGGCCTCAAGGAAAGAGTAAAGACAGCATTTCGTCGAATCCAAAGTGCGGTGAAACCAATTCCTCTTTCTTCATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016073 GO:0016180 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

Beta-Casp CPSF73-100_C Lactamase_B Lactamase_B_6 RMMBL

Protein Analysis

801

Amino Acids

89.75

Weight (kDa)

6.92

Isoelectric Point (pI)

46.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lactamase_B	PF00753	145 - 307	3.6e-19	Metallo-beta-lactamase superfamily
Anti-Pycsar_Apyc1	PF23023	151 - 307	8.9e-08	Anti-Pycsar protein Apyc1
Lactamase_B_6	PF16661	153 - 314	1.1e-17	Metallo-beta-lactamase superfamily domain
Lactamase_B_2	PF12706	157 - 307	2.1e-07	Beta-lactamase superfamily domain
Beta-Casp	PF10996	367 - 486	3e-29	Beta-Casp domain
RMMBL	PF07521	502 - 554	2.1e-10	Zn-dependent metallo-hydrolase RNA specificity domain
CPSF73-100_C	PF11718	596 - 795	3.8e-52	Pre-mRNA 3'-end-processing endonuclease polyadenylation factor C-term

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61010 AT1G61010 AT1G61010 AT1G61010 AT1G61010
fragaria_vesca	FvH4_4g07000 FvH4_4g07000 FvH4_5g28761 FvH4_5g28770 FvH4_7g26770
malus_domestica	MD08G1237400.v1.1 MD15G1429300.v1.1
prunus_persica	Prupe.1G574800_v2.0.a1 Prupe.1G574800_v2.0.a1 Prupe.1G574900_v2.0.a1 Prupe.I006100_v2.0.a1 Prupe.I006100_v2.0.a1 Prupe.I006200_v2.0.a1
pyrus_communis	pycom08g20590 pycom08g20600 pycom15g37980 pycom15g37990
rosa_chinensis	RchiOBHm_Chr1g0363271 RchiOBHm_Chr4g0399131 RchiOBHm_Chr7g0220981
rosa_laevigata	RLG00000002186 RLG00000009298
rosa_multiflora	Rmu_sc0002002.1_g000015 Rmu_sc0002105.1_g000022
rosa_roxburghii	Rroxscaffold_3G00238830 Rroxscaffold_5G00344090
rosa_rugosa	Rorug04G0014100 Rorug07G0199100
rosa_samantha	Rh1DG309200 Rh4BG089900 Rh4DG084500 Rh7AG339000 Rh7BG329800 Rh7CG357100 Rh7DG337800
rosa_wichuraiana	Rw4G007590 Rw7G028840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	821
AccBSI	CCGCTC	1 cut(s)	1502
AccI	GTMKAC	1 cut(s)	1904
AccII	CGCG	2 cut(s)	74, 160
AclI	AACGTT	1 cut(s)	2310
AclWI	GGATC	5 cut(s)	536, 594, 1234, 1247, 2060
AcoI	YGGCCR	2 cut(s)	155, 1093
AcsI	RAATTY	3 cut(s)	229, 281, 1303
AcuI	CTGAAG	3 cut(s)	357, 1053, 1860
AcvI	CACGTG	1 cut(s)	908
AfaI	GTAC	4 cut(s)	449, 603, 1217, 1348
AfiI	CCNNNNNNNGG	6 cut(s)	244, 416, 879, 1327, 1778, 2374
AflIII	ACRYGT	4 cut(s)	450, 1512, 1562, 2041
AhdI	GACNNNNNGTC	1 cut(s)	2083
AjnI	CCWGG	2 cut(s)	1342, 2239
AjuI	GAANNNNNNNTTGG	1 cut(s)	2377
Alw21I	GWGCWC	4 cut(s)	18, 1152, 1394, 2209
Alw26I	GTCTC	1 cut(s)	1205
Alw44I	GTGCAC	1 cut(s)	2205
AlwI	GGATC	5 cut(s)	536, 594, 1234, 1247, 2060
AlwNI	CAGNNNCTG	1 cut(s)	1553
Ama87I	CYCGRG	2 cut(s)	505, 1056
AoxI	GGCC	7 cut(s)	155, 634, 1093, 1318, 1586, 1833, 2329
ApaI	GGGCCC	1 cut(s)	1322
ApaLI	GTGCAC	1 cut(s)	2205
ApoI	RAATTY	3 cut(s)	229, 281, 1303
Asp700I	GAANNNNTTC	2 cut(s)	1025, 1845
AspLEI	GCGC	2 cut(s)	74, 2287
AspS9I	GGNCC	4 cut(s)	634, 883, 1318, 1319
AsuC2I	CCSGG	2 cut(s)	1422, 1772
AsuHPI	GGTGA	6 cut(s)	1275, 1342, 1793, 1933, 2272, 2389
AvaI	CYCGRG	2 cut(s)	505, 1056
AvaII	GGWCC	1 cut(s)	883
BaeGI	GKGCMC	3 cut(s)	1102, 1322, 2209
BamHI	GGATCC	1 cut(s)	1239
BanII	GRGCYC	2 cut(s)	1152, 1322
BbrPI	CACGTG	1 cut(s)	908
BbsI	GAAGAC	6 cut(s)	49, 310, 363, 626, 921, 2192
Bbv12I	GWGCWC	4 cut(s)	18, 1152, 1394, 2209
BbvCI	CCTCAGC	2 cut(s)	1583, 1937
BccI	CCATC	6 cut(s)	331, 1005, 1149, 1327, 1621, 2267
BceAI	ACGGC	5 cut(s)	105, 278, 303, 1080, 1887
BciT130I	CCWGG	2 cut(s)	1344, 2241
BciVI	GTATCC	1 cut(s)	2023
BclI	TGATCA	1 cut(s)	2262
BcnI	CCSGG	2 cut(s)	1422, 1772
BcoDI	GTCTC	1 cut(s)	1205
BfaI	CTAG	1 cut(s)	98
BfmI	CTRYAG	2 cut(s)	670, 828
BfuAI	ACCTGC	1 cut(s)	821
BfuI	GTATCC	1 cut(s)	2023
BglII	AGATCT	1 cut(s)	1843
Bme1390I	CCNGG	4 cut(s)	1344, 1422, 1772, 2241
Bme18I	GGWCC	1 cut(s)	883
BmeRI	GACNNNNNGTC	1 cut(s)	2083
BmeT110I	CYCGRG	2 cut(s)	505, 1056
BmgT120I	GGNCC	4 cut(s)	634, 883, 1318, 1319
BmiI	GGNNCC	4 cut(s)	884, 1241, 1320, 1321
BmrFI	CCNGG	4 cut(s)	1344, 1422, 1772, 2241
BmrI	ACTGGG	1 cut(s)	234
BmsI	GCATC	5 cut(s)	122, 371, 605, 930, 975
BmuI	ACTGGG	1 cut(s)	234
BpiI	GAAGAC	6 cut(s)	49, 310, 363, 626, 921, 2192
BpmI	CTGGAG	3 cut(s)	915, 2004, 2262
Bpu10I	CCTNAGC	2 cut(s)	1583, 1937
BpuEI	CTTGAG	3 cut(s)	28, 635, 2318
BpuMI	CCSGG	2 cut(s)	1422, 1772
BsaAI	YACGTR	1 cut(s)	908
BsaJI	CCNNGG	5 cut(s)	841, 1342, 1770, 1869, 2133
Bsc4I	CCNNNNNNNGG	6 cut(s)	244, 416, 879, 1327, 1778, 2374
Bse118I	RCCGGY	1 cut(s)	872
Bse1I	ACTGG	5 cut(s)	240, 898, 1188, 1806, 1915
Bse3DI	GCAATG	1 cut(s)	1252
BseBI	CCWGG	2 cut(s)	1344, 2241
BseDI	CCNNGG	5 cut(s)	841, 1342, 1770, 1869, 2133
BseGI	GGATG	6 cut(s)	137, 596, 1141, 1978, 2064, 2236
BseLI	CCNNNNNNNGG	6 cut(s)	244, 416, 879, 1327, 1778, 2374
BseMI	GCAATG	1 cut(s)	1252
BseMII	CTCAG	7 cut(s)	104, 191, 927, 1338, 1574, 1752, 1928
BseNI	ACTGG	5 cut(s)	240, 898, 1188, 1806, 1915
BseRI	GAGGAG	4 cut(s)	26, 209, 1494, 1592
BseSI	GKGCMC	3 cut(s)	1102, 1322, 2209
BseYI	CCCAGC	1 cut(s)	290
Bsh1236I	CGCG	2 cut(s)	74, 160
Bsh1285I	CGRYCG	1 cut(s)	1066
BshFI	GGCC	7 cut(s)	157, 636, 1095, 1320, 1588, 1835, 2331
BsiEI	CGRYCG	1 cut(s)	1066
BsiHKAI	GWGCWC	4 cut(s)	18, 1152, 1394, 2209
BsiHKCI	CYCGRG	2 cut(s)	505, 1056
BsiSI	CCGG	4 cut(s)	136, 873, 1421, 1772
BslFI	GGGAC	3 cut(s)	357, 1453, 2114
BslI	CCNNNNNNNGG	6 cut(s)	244, 416, 879, 1327, 1778, 2374
BsmAI	GTCTC	1 cut(s)	1205
BsmBI	CGTCTC	1 cut(s)	1205
BsmFI	GGGAC	3 cut(s)	357, 1453, 2114
BsmI	GAATGC	1 cut(s)	807
BsnI	GGCC	7 cut(s)	157, 636, 1095, 1320, 1588, 1835, 2331
BsoBI	CYCGRG	2 cut(s)	505, 1056
Bsp120I	GGGCCC	1 cut(s)	1318
Bsp1286I	GDGCHC	6 cut(s)	18, 1102, 1152, 1322, 1394, 2209
Bsp1407I	TGTACA	1 cut(s)	447
Bsp143I	GATC	8 cut(s)	541, 586, 1239, 1666, 1843, 2008, 2065, 2262
BspANI	GGCC	7 cut(s)	157, 636, 1095, 1320, 1588, 1835, 2331
BspCNI	CTCAG	7 cut(s)	105, 192, 928, 1337, 1575, 1753, 1929
BspFNI	CGCG	2 cut(s)	74, 160
BspHI	TCATGA	2 cut(s)	1458, 1621
BspLI	GGNNCC	4 cut(s)	884, 1241, 1320, 1321
BspMAI	CTGCAG	1 cut(s)	832
BspMI	ACCTGC	1 cut(s)	821
BspPI	GGATC	5 cut(s)	536, 594, 1234, 1247, 2060
BsrBI	CCGCTC	1 cut(s)	1502
BsrDI	GCAATG	1 cut(s)	1252
BsrFI	RCCGGY	1 cut(s)	872
BsrGI	TGTACA	1 cut(s)	447
BsrI	ACTGG	5 cut(s)	240, 898, 1188, 1806, 1915
BssAI	RCCGGY	1 cut(s)	872
BssECI	CCNNGG	5 cut(s)	841, 1342, 1770, 1869, 2133
BssMI	GATC	8 cut(s)	541, 586, 1239, 1666, 1843, 2008, 2065, 2262
BssNAI	GTATAC	1 cut(s)	1905
BssT1I	CCWWGG	2 cut(s)	841, 2133
Bst1107I	GTATAC	1 cut(s)	1905
Bst2UI	CCWGG	2 cut(s)	1344, 2241
Bst4CI	ACNGT	5 cut(s)	793, 948, 1287, 1789, 2020
Bst6I	CTCTTC	2 cut(s)	1356, 2166
BstAUI	TGTACA	1 cut(s)	447
BstBAI	YACGTR	1 cut(s)	908
BstC8I	GCNNGC	4 cut(s)	1339, 1361, 1497, 1758
BstDSI	CCRYGG	1 cut(s)	1869
BstEII	GGTNACC	1 cut(s)	1477
BstENI	CCTNNNNNAGG	1 cut(s)	414
BstF5I	GGATG	6 cut(s)	137, 596, 1141, 1978, 2064, 2236
BstFNI	CGCG	2 cut(s)	74, 160
BstHHI	GCGC	2 cut(s)	74, 2287
BstKTI	GATC	8 cut(s)	544, 589, 1242, 1669, 1846, 2011, 2068, 2265
BstMAI	GTCTC	1 cut(s)	1205
BstMBI	GATC	8 cut(s)	541, 586, 1239, 1666, 1843, 2008, 2065, 2262
BstMCI	CGRYCG	1 cut(s)	1066
BstMWI	GCNNNNNNNGC	7 cut(s)	80, 89, 157, 662, 1369, 1544, 1996
BstNI	CCWGG	2 cut(s)	1344, 2241
BstNSI	RCATGY	4 cut(s)	454, 1516, 1566, 2045
BstPI	GGTNACC	1 cut(s)	1477
BstSCI	CCNGG	4 cut(s)	1342, 1420, 1770, 2239
BstSFI	CTRYAG	2 cut(s)	670, 828
BstSLI	GKGCMC	3 cut(s)	1102, 1322, 2209
BstUI	CGCG	2 cut(s)	74, 160
BstV2I	GAAGAC	6 cut(s)	49, 310, 363, 626, 921, 2192
BstX2I	RGATCY	3 cut(s)	1239, 1843, 2065
BstYI	RGATCY	3 cut(s)	1239, 1843, 2065
BstZ17I	GTATAC	1 cut(s)	1905
BsuI	GTATCC	1 cut(s)	2023
BsuRI	GGCC	7 cut(s)	157, 636, 1095, 1320, 1588, 1835, 2331
BtgI	CCRYGG	1 cut(s)	1869
BtsCI	GGATG	6 cut(s)	137, 596, 1141, 1978, 2064, 2236
BtsI	GCAGTG	2 cut(s)	825, 2048
BtsIMutI	CAGTG	8 cut(s)	825, 891, 1029, 1181, 1332, 1798, 2048, 2272
BveI	ACCTGC	1 cut(s)	821
Cac8I	GCNNGC	4 cut(s)	1339, 1361, 1497, 1758
CaiI	CAGNNNCTG	1 cut(s)	1553
CciI	TCATGA	2 cut(s)	1458, 1621
CfoI	GCGC	2 cut(s)	74, 2287
Cfr10I	RCCGGY	1 cut(s)	872
Cfr13I	GGNCC	4 cut(s)	634, 883, 1318, 1319
Csp6I	GTAC	4 cut(s)	448, 602, 1216, 1347
CviQI	GTAC	4 cut(s)	448, 602, 1216, 1347
DpnI	GATC	8 cut(s)	543, 588, 1241, 1668, 1845, 2010, 2067, 2264
DpnII	GATC	8 cut(s)	541, 586, 1239, 1666, 1843, 2008, 2065, 2262
DriI	GACNNNNNGTC	1 cut(s)	2083
EaeI	YGGCCR	2 cut(s)	155, 1093
Eam1104I	CTCTTC	2 cut(s)	1356, 2166
Eam1105I	GACNNNNNGTC	1 cut(s)	2083
EarI	CTCTTC	2 cut(s)	1356, 2166
Ecl136II	GAGCTC	1 cut(s)	1150
Eco130I	CCWWGG	2 cut(s)	841, 2133
Eco147I	AGGCCT	2 cut(s)	1588, 2331
Eco24I	GRGCYC	2 cut(s)	1152, 1322
Eco47I	GGWCC	1 cut(s)	883
Eco53kI	GAGCTC	1 cut(s)	1150
Eco57I	CTGAAG	3 cut(s)	357, 1053, 1860
Eco72I	CACGTG	1 cut(s)	908
Eco88I	CYCGRG	2 cut(s)	505, 1056
Eco91I	GGTNACC	1 cut(s)	1477
EcoICRI	GAGCTC	1 cut(s)	1150
EcoNI	CCTNNNNNAGG	1 cut(s)	414
EcoO109I	RGGNCCY	2 cut(s)	883, 1319
EcoO65I	GGTNACC	1 cut(s)	1477
EcoRI	GAATTC	1 cut(s)	281
EcoRII	CCWGG	2 cut(s)	1342, 2239
EcoT14I	CCWWGG	2 cut(s)	841, 2133
EcoT22I	ATGCAT	1 cut(s)	968
EcoT38I	GRGCYC	2 cut(s)	1152, 1322
ErhI	CCWWGG	2 cut(s)	841, 2133
Esp3I	CGTCTC	1 cut(s)	1205
FaqI	GGGAC	3 cut(s)	357, 1453, 2114
FauI	CCCGC	2 cut(s)	505, 1352
FauNDI	CATATG	1 cut(s)	1084
FbaI	TGATCA	1 cut(s)	2262
FblI	GTMKAC	1 cut(s)	1904
FokI	GGATG	6 cut(s)	144, 583, 1128, 1985, 2071, 2243
FriOI	GRGCYC	2 cut(s)	1152, 1322
FspBI	CTAG	1 cut(s)	98
GlaI	GCGC	2 cut(s)	73, 2286
GsaI	CCCAGC	1 cut(s)	294
GsuI	CTGGAG	3 cut(s)	915, 2004, 2262
HaeIII	GGCC	7 cut(s)	157, 636, 1095, 1320, 1588, 1835, 2331
HapII	CCGG	4 cut(s)	136, 873, 1421, 1772
HhaI	GCGC	2 cut(s)	74, 2287
Hin6I	GCGC	2 cut(s)	72, 2285
HinP1I	GCGC	2 cut(s)	72, 2285
HpaII	CCGG	4 cut(s)	136, 873, 1421, 1772
HphI	GGTGA	6 cut(s)	1275, 1342, 1793, 1933, 2272, 2389
Hpy166II	GTNNAC	7 cut(s)	448, 978, 1218, 1799, 1869, 1905, 2207
Hpy8I	GTNNAC	7 cut(s)	448, 978, 1218, 1799, 1869, 1905, 2207
Hpy99I	CGWCG	3 cut(s)	11, 1996, 2364
HpyAV	CCTTC	7 cut(s)	555, 572, 733, 1273, 1626, 1746, 2321
HpyCH4III	ACNGT	5 cut(s)	793, 948, 1287, 1789, 2020
HpyCH4IV	ACGT	6 cut(s)	907, 1011, 1214, 1888, 1994, 2310
HpyF10VI	GCNNNNNNNGC	7 cut(s)	80, 89, 157, 662, 1369, 1544, 1996
HpySE526I	ACGT	6 cut(s)	907, 1011, 1214, 1888, 1994, 2310
HspAI	GCGC	2 cut(s)	72, 2285
Ksp22I	TGATCA	1 cut(s)	2262
Kzo9I	GATC	8 cut(s)	541, 586, 1239, 1666, 1843, 2008, 2065, 2262
LmnI	GCTCC	5 cut(s)	13, 122, 196, 1507, 1579
LweI	GCATC	5 cut(s)	122, 371, 605, 930, 975
MaeI	CTAG	1 cut(s)	98
MaeII	ACGT	6 cut(s)	907, 1011, 1214, 1888, 1994, 2310
MaeIII	GTNAC	5 cut(s)	403, 1477, 1879, 2014, 2075
MalI	GATC	8 cut(s)	543, 588, 1241, 1668, 1845, 2010, 2067, 2264
MbiI	CCGCTC	1 cut(s)	1502
MboI	GATC	8 cut(s)	541, 586, 1239, 1666, 1843, 2008, 2065, 2262
MfeI	CAATTG	1 cut(s)	552
MflI	RGATCY	3 cut(s)	1239, 1843, 2065
MhlI	GDGCHC	6 cut(s)	18, 1102, 1152, 1322, 1394, 2209
MlyI	GAGTC	5 cut(s)	35, 400, 648, 983, 2084
MmeI	TCCRAC	1 cut(s)	30
Mph1103I	ATGCAT	1 cut(s)	968
MroXI	GAANNNNTTC	2 cut(s)	1025, 1845
MseI	TTAA	4 cut(s)	1073, 1289, 1722, 1806
MslI	CAYNNNNRTG	1 cut(s)	927
MspA1I	CMGCKG	1 cut(s)	1864
MspI	CCGG	4 cut(s)	136, 873, 1421, 1772
MspR9I	CCNGG	4 cut(s)	1344, 1422, 1772, 2241
MunI	CAATTG	1 cut(s)	552
Mva1269I	GAATGC	1 cut(s)	807
MvaI	CCWGG	2 cut(s)	1344, 2241
MvnI	CGCG	2 cut(s)	74, 160
MwoI	GCNNNNNNNGC	7 cut(s)	80, 89, 157, 662, 1369, 1544, 1996
NciI	CCSGG	2 cut(s)	1422, 1772
NdeI	CATATG	1 cut(s)	1084
NdeII	GATC	8 cut(s)	541, 586, 1239, 1666, 1843, 2008, 2065, 2262
NlaIV	GGNNCC	4 cut(s)	884, 1241, 1320, 1321
NmeAIII	GCCGAG	1 cut(s)	662
NmuCI	GTSAC	4 cut(s)	403, 1879, 2014, 2075
NsiI	ATGCAT	1 cut(s)	968
NspI	RCATGY	4 cut(s)	454, 1516, 1566, 2045
PaeR7I	CTCGAG	1 cut(s)	1056
PagI	TCATGA	2 cut(s)	1458, 1621
PceI	AGGCCT	2 cut(s)	1588, 2331
PciI	ACATGT	4 cut(s)	450, 1512, 1562, 2041
PcsI	WCGNNNNNNNCGW	2 cut(s)	1012, 1063
PctI	GAATGC	1 cut(s)	807
PdmI	GAANNNNTTC	2 cut(s)	1025, 1845
PfeI	GAWTC	9 cut(s)	489, 1026, 1117, 1417, 1550, 1961, 1979, 2147, 2364
PleI	GAGTC	5 cut(s)	34, 400, 647, 982, 2084
PmaCI	CACGTG	1 cut(s)	908
PmlI	CACGTG	1 cut(s)	908
PpsI	GAGTC	5 cut(s)	34, 400, 647, 982, 2084
Ppu21I	YACGTR	1 cut(s)	908
PpuMI	RGGWCCY	1 cut(s)	883
PscI	ACATGT	4 cut(s)	450, 1512, 1562, 2041
Psp124BI	GAGCTC	1 cut(s)	1152
Psp1406I	AACGTT	1 cut(s)	2310
Psp5II	RGGWCCY	1 cut(s)	883
Psp6I	CCWGG	2 cut(s)	1342, 2239
PspCI	CACGTG	1 cut(s)	908
PspEI	GGTNACC	1 cut(s)	1477
PspFI	CCCAGC	1 cut(s)	290
PspGI	CCWGG	2 cut(s)	1342, 2239
PspN4I	GGNNCC	4 cut(s)	884, 1241, 1320, 1321
PspOMI	GGGCCC	1 cut(s)	1318
PspPI	GGNCC	4 cut(s)	634, 883, 1318, 1319
PspPPI	RGGWCCY	1 cut(s)	883
PstI	CTGCAG	1 cut(s)	832
PstNI	CAGNNNCTG	1 cut(s)	1553
PsuI	RGATCY	3 cut(s)	1239, 1843, 2065
PvuII	CAGCTG	1 cut(s)	1864
RsaI	GTAC	4 cut(s)	449, 603, 1217, 1348
RsaNI	GTAC	4 cut(s)	448, 602, 1216, 1347
RseI	CAYNNNNRTG	1 cut(s)	927
SacI	GAGCTC	1 cut(s)	1152
SaqAI	TTAA	4 cut(s)	1073, 1289, 1722, 1806
Sau3AI	GATC	8 cut(s)	541, 586, 1239, 1666, 1843, 2008, 2065, 2262
Sau96I	GGNCC	4 cut(s)	634, 883, 1318, 1319
SchI	GAGTC	5 cut(s)	35, 400, 648, 983, 2084
ScrFI	CCNGG	4 cut(s)	1344, 1422, 1772, 2241
SduI	GDGCHC	6 cut(s)	18, 1102, 1152, 1322, 1394, 2209
SfaNI	GCATC	5 cut(s)	122, 371, 605, 930, 975
SfcI	CTRYAG	2 cut(s)	670, 828
Sfr274I	CTCGAG	1 cut(s)	1056
SinI	GGWCC	1 cut(s)	883
SlaI	CTCGAG	1 cut(s)	1056
SmiMI	CAYNNNNRTG	1 cut(s)	927
SmlI	CTYRAG	4 cut(s)	43, 614, 1056, 2333
SmoI	CTYRAG	4 cut(s)	43, 614, 1056, 2333
SseBI	AGGCCT	2 cut(s)	1588, 2331
SspI	AATATT	1 cut(s)	1159
SspMI	CTAG	1 cut(s)	98
SstI	GAGCTC	1 cut(s)	1152
StuI	AGGCCT	2 cut(s)	1588, 2331
StyD4I	CCNGG	4 cut(s)	1342, 1420, 1770, 2239
StyI	CCWWGG	2 cut(s)	841, 2133
TaaI	ACNGT	5 cut(s)	793, 948, 1287, 1789, 2020
TaiI	ACGT	6 cut(s)	910, 1014, 1217, 1891, 1997, 2313
TaqI	TCGA	8 cut(s)	24, 335, 732, 1006, 1057, 1152, 2011, 2362
TaqII	GACCGA	1 cut(s)	933
TatI	WGTACW	1 cut(s)	447
TauI	GCSGC	2 cut(s)	160, 1502
TfiI	GAWTC	9 cut(s)	489, 1026, 1117, 1417, 1550, 1961, 1979, 2147, 2364
Tru1I	TTAA	4 cut(s)	1073, 1289, 1722, 1806
Tru9I	TTAA	4 cut(s)	1073, 1289, 1722, 1806
TscAI	CASTG	8 cut(s)	832, 898, 1036, 1188, 1332, 1798, 2055, 2272
TseFI	GTSAC	4 cut(s)	403, 1879, 2014, 2075
Tsp45I	GTSAC	4 cut(s)	403, 1879, 2014, 2075
TspGWI	ACGGA	2 cut(s)	589, 2204
TspRI	CASTG	8 cut(s)	832, 898, 1036, 1188, 1332, 1798, 2055, 2272
VneI	GTGCAC	1 cut(s)	2205
VpaK11BI	GGWCC	1 cut(s)	883
XagI	CCTNNNNNAGG	1 cut(s)	414
XapI	RAATTY	3 cut(s)	229, 281, 1303
XceI	RCATGY	4 cut(s)	454, 1516, 1566, 2045
XhoI	CTCGAG	1 cut(s)	1056
XmiI	GTMKAC	1 cut(s)	1904
XmnI	GAANNNNTTC	2 cut(s)	1025, 1845
XspI	CTAG	1 cut(s)	98
Zsp2I	ATGCAT	1 cut(s)	968

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.