Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0002312

Physical Location & Seq

Genomic Coordinates Forward (+)

50403353 .. 50409028

Gene Structure 5676 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009298

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2298 bp

ATGAGCCGGGCTGGGGCAGCCCTTTTTCTGTATCTCAAAAACCCCAAAATTTCGACCCCAGTTCGGCAGCCGATTTTAGTTTCGTCACATCTCAGATTTGATGACTTGGAAATCTTGATACGAGTGTTGGTGTTCTTAAGCAACTTATTCTACGGCTCTACCCATTCCAAGAATTCACGGCTGGGATTAGCAGAAGACTACAGATTCAGTTTTACCAAAATGGCTTCGGTGGCGGGACAAAAGAGGCGTGAAGCATCATCGTCTTCAGCAGCAAAACAGGAAGATAAGCTGATTGTGACTCCATTAGGAGGTGGTAGCGAAGTTGGTCGCTCTTGCGTGTACATGTCCTACAAAGGCAAAAATGTCTTGTTTGATTGCGGAATCAATCCTGCTTTCTCGGGCATGGCTGCTTTGCCCTACTTTGATGAGATTGATCCTTCCACAATTGATGTCCTTCTCATAACCCATTTTCACTTGGATCATGCTGCATCTCTACCTTACTTCCTTCAGAAGACCACTTTCAAGGGCCGAGTCTTTATGACTTATGCAACAAAGGCTATCTATAGGTTGCTTTTGGCAGATTATATGAAAGTGAGCAAAGTTTCAGTTGAAGATATGTTGTTCGATGAGAAGGACATAACTGCTTCTACGGATAAAATTGAGGTTATTGATTTCCACCAAACAGTAGAAGTTGAGGGCATCCGGTTTTGGTGCTACACTGCAGGTCATGTCCTTGGTGCTGCTATGTTTATGGTTGATATTGCCGGTGTTAGGGTCCTCTACACTGGAGATTATTCACGTGAAGAAGACCGACACCTCCATGCTGCTGAGATGCCACAGTTCTCCCCTGATATATGCATCATTGAGTCCACATTTGGTGTCCAGCACCATCAACCTCGAAACGTCCGAGAGAAGCGATTCACTGAAGCTATACACACAGCAATCTCTCGAGGGGGTCGTGTCTTAATTCCTGCATATGCACTTGGCCGTGCCCAAGAACTTCTCCTGATTCTTGATGAGTATTGGTCAAACCATCCCGAGCTCCATAATATTCCTATATATTATGCTTCCCCACTGGCAAAAAAATGTTTGTCTGTTTATGAGACGTACACCCTTTCAATGAACGATAGGATCCGCAATGCCAAGTCAAATCCCTTCATCTTCAACCACATATCACCATTAAACAGCGTTGAGAATTTCAAAGATGTGGGCCCCTCAGTGGTGATGGCAAGCCCTGGTACTCTTCAAAGCGGGCTGTCAAGGCAGCTATTTGATAAGTGGTGCTCTGATAAGAGAAATGCGTGTGTGATTCCGGGTTATGTGATTGAGGGGACACTTGCTAAGACAATCATGAATGAACCGAAAGAGGTTACCCTTATGAATGGGCTTGCCGCTCCTCTCAACATGTCAATCCATTACATTTCATTCGCTGCTCATGCAGATTCTGTTCAGACATGTGCATTTTTGGATGAGCTGAGGCCTCCTAACATAATCCTTGTTCATGGAGAAGCTCATGAGATGGGAAGGCTGAAAGAGAAGCTCATGACTCAATTTCGTGATCGCAACACAAAAATCCTCACACCAAAGAATTGTCAGTCTGTTGAAATGTATTTTAACTCGCAGAAAATGGCTAAAGCTATTGGAAGGCTTGCTGAGAGAACCCCGGAAGTCGGTGAAACAGTCGGCGGTTTACTGGTTAAAAAAGGTTTCAGTTATCAGATAATGGCCTCTGAAGATCTTCATGTGTTCTCACAGCTGTCCACGGCAAATGTCACTCAACGTATTACTATCCCGTATACTACTGGCTTCATGGTGATAAGACATCGGCTGAGGCAAATGTATGAGAGCGTCGAATCTTCTGTGGATGAGGAATCTGGAGTGCCGACGTTGCGAGTGCATGATCGAGTGACTGTGAGGCAGGATACAGATAAACATGTTTCACTGCATTGGATGTCAGATCCTATAAGTGACATGGTGTCAGACTCCATTGTGGCTCTAATTTTGAATATCAATAGAGAAGTCCCCAAGGTAGTCATTGAATCGGAAGATTTAACAACAGAGGAAGAGAATGGGAGGAAGACGGAAAAGGTCATTCGTGCACTTCTTGTATCACTCTTTGGGGATGTGAAGCCTGGAGAAAATGGGAAGTTGGTGATCAGTGTTGATGGAAATGTGGCACAGCTTGATAAACAGAGTGGGGACGTTGAAAGTGAAAATGAAGGCCTCAAGGAAAGAGTAAAGACAGCATTTCGTCGAATCCAAAGTGCGGTGAAACCAATTCCTCTTTCTTCATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016073 GO:0016180 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

Beta-Casp CPSF73-100_C Lactamase_B Lactamase_B_6 RMMBL

Protein Analysis

766

Amino Acids

85.73

Weight (kDa)

6.8

Isoelectric Point (pI)

45.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lactamase_B	PF00753	109 - 271	2e-19	Metallo-beta-lactamase superfamily
Anti-Pycsar_Apyc1	PF23023	115 - 271	2.2e-08	Anti-Pycsar protein Apyc1
Lactamase_B_6	PF16661	117 - 278	4.6e-18	Metallo-beta-lactamase superfamily domain
Lactamase_B_2	PF12706	121 - 271	1.7e-07	Beta-lactamase superfamily domain
Beta-Casp	PF10996	331 - 450	6.1e-30	Beta-Casp domain
RMMBL	PF07521	466 - 518	2.5e-10	Zn-dependent metallo-hydrolase RNA specificity domain
CPSF73-100_C	PF11718	560 - 759	3.3e-51	Pre-mRNA 3'-end-processing endonuclease polyadenylation factor C-term

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61010 AT1G61010 AT1G61010 AT1G61010 AT1G61010
fragaria_vesca	FvH4_4g07000 FvH4_4g07000 FvH4_5g28761 FvH4_5g28770 FvH4_7g26770
malus_domestica	MD08G1237400.v1.1 MD15G1429300.v1.1
prunus_persica	Prupe.1G574800_v2.0.a1 Prupe.1G574800_v2.0.a1 Prupe.1G574900_v2.0.a1 Prupe.I006100_v2.0.a1 Prupe.I006100_v2.0.a1 Prupe.I006200_v2.0.a1
pyrus_communis	pycom08g20590 pycom08g20600 pycom15g37980 pycom15g37990
rosa_chinensis	RchiOBHm_Chr1g0363271 RchiOBHm_Chr4g0399131 RchiOBHm_Chr7g0220981
rosa_laevigata	RLG00000002186 RLG00000009298
rosa_multiflora	Rmu_sc0002002.1_g000015 Rmu_sc0002105.1_g000022
rosa_roxburghii	Rroxscaffold_3G00238830 Rroxscaffold_5G00344090
rosa_rugosa	Rorug04G0014100 Rorug07G0199100
rosa_samantha	Rh1DG309200 Rh4BG089900 Rh4DG084500 Rh7AG339000 Rh7BG329800 Rh7CG357100 Rh7DG337800
rosa_wichuraiana	Rw4G007590 Rw7G028840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	713
AccBSI	CCGCTC	1 cut(s)	1394
AccI	GTMKAC	1 cut(s)	1796
AciI	CCGC	7 cut(s)	233, 378, 1135, 1251, 1392, 1686, 2267
AclWI	GGATC	5 cut(s)	428, 486, 1126, 1139, 1952
AcoI	YGGCCR	1 cut(s)	985
AcsI	RAATTY	3 cut(s)	48, 172, 1195
AcuI	CTGAAG	4 cut(s)	249, 491, 945, 1752
AcvI	CACGTG	1 cut(s)	800
AfaI	GTAC	3 cut(s)	341, 1109, 1240
AfiI	CCNNNNNNNGG	7 cut(s)	13, 63, 308, 771, 1219, 1670, 2266
AflII	CTTAAG	1 cut(s)	136
AflIII	ACRYGT	4 cut(s)	342, 1404, 1454, 1933
AhdI	GACNNNNNGTC	1 cut(s)	1975
AjnI	CCWGG	2 cut(s)	1234, 2131
AjuI	GAANNNNNNNTTGG	1 cut(s)	2269
Alw21I	GWGCWC	3 cut(s)	1044, 1286, 2101
Alw26I	GTCTC	1 cut(s)	1097
Alw44I	GTGCAC	1 cut(s)	2097
AlwI	GGATC	5 cut(s)	428, 486, 1126, 1139, 1952
AlwNI	CAGNNNCTG	1 cut(s)	1445
Ama87I	CYCGRG	3 cut(s)	397, 948, 1037
AoxI	GGCC	6 cut(s)	526, 985, 1210, 1478, 1725, 2221
ApaI	GGGCCC	1 cut(s)	1214
ApaLI	GTGCAC	1 cut(s)	2097
ApeKI	GCWGC	9 cut(s)	17, 67, 269, 407, 485, 740, 824, 1264, 1430
ApoI	RAATTY	3 cut(s)	48, 172, 1195
Asp700I	GAANNNNTTC	2 cut(s)	917, 1737
AspS9I	GGNCC	4 cut(s)	526, 775, 1210, 1211
AsuC2I	CCSGG	3 cut(s)	8, 1314, 1664
AsuHPI	GGTGA	6 cut(s)	1167, 1234, 1685, 1825, 2164, 2281
AvaI	CYCGRG	3 cut(s)	397, 948, 1037
AvaII	GGWCC	1 cut(s)	775
BaeGI	GKGCMC	3 cut(s)	994, 1214, 2101
BaeI	ACNNNNGTAYC	2 cut(s)	110, 143
BamHI	GGATCC	1 cut(s)	1131
BanII	GRGCYC	2 cut(s)	1044, 1214
BbrPI	CACGTG	1 cut(s)	800
BbsI	GAAGAC	5 cut(s)	201, 255, 518, 813, 2084
Bbv12I	GWGCWC	3 cut(s)	1044, 1286, 2101
BbvCI	CCTCAGC	2 cut(s)	1475, 1829
BbvI	GCAGC	9 cut(s)	29, 79, 281, 394, 472, 727, 811, 1276, 1417
BccI	CCATC	5 cut(s)	897, 1041, 1219, 1513, 2159
BceAI	ACGGC	4 cut(s)	169, 194, 972, 1779
BciT130I	CCWGG	2 cut(s)	1236, 2133
BciVI	GTATCC	1 cut(s)	1915
BclI	TGATCA	1 cut(s)	2154
BcnI	CCSGG	3 cut(s)	8, 1314, 1664
BcoDI	GTCTC	1 cut(s)	1097
BfmI	CTRYAG	3 cut(s)	199, 562, 720
BfrI	CTTAAG	1 cut(s)	136
BfuAI	ACCTGC	1 cut(s)	713
BfuI	GTATCC	1 cut(s)	1915
BglII	AGATCT	1 cut(s)	1735
Bme1390I	CCNGG	5 cut(s)	8, 1236, 1314, 1664, 2133
Bme18I	GGWCC	1 cut(s)	775
BmeRI	GACNNNNNGTC	1 cut(s)	1975
BmeT110I	CYCGRG	3 cut(s)	397, 948, 1037
BmgT120I	GGNCC	4 cut(s)	526, 775, 1210, 1211
BmiI	GGNNCC	4 cut(s)	776, 1133, 1212, 1213
BmrFI	CCNGG	5 cut(s)	8, 1236, 1314, 1664, 2133
BmrI	ACTGGG	1 cut(s)	53
BmsI	GCATC	5 cut(s)	263, 497, 708, 822, 867
BmuI	ACTGGG	1 cut(s)	53
BpiI	GAAGAC	5 cut(s)	201, 255, 518, 813, 2084
BpmI	CTGGAG	3 cut(s)	807, 1896, 2154
Bpu10I	CCTNAGC	2 cut(s)	1475, 1829
BpuEI	CTTGAG	1 cut(s)	2210
BpuMI	CCSGG	3 cut(s)	8, 1314, 1664
BsaAI	YACGTR	1 cut(s)	800
BsaJI	CCNNGG	5 cut(s)	733, 1234, 1662, 1761, 2025
BsaWI	WCCGGW	1 cut(s)	702
Bsc4I	CCNNNNNNNGG	7 cut(s)	13, 63, 308, 771, 1219, 1670, 2266
Bse118I	RCCGGY	1 cut(s)	764
Bse1I	ACTGG	5 cut(s)	59, 790, 1080, 1698, 1807
Bse3DI	GCAATG	1 cut(s)	1144
BseBI	CCWGG	2 cut(s)	1236, 2133
BseDI	CCNNGG	5 cut(s)	733, 1234, 1662, 1761, 2025
BseGI	GGATG	6 cut(s)	699, 1033, 1474, 1870, 1956, 2128
BseLI	CCNNNNNNNGG	7 cut(s)	13, 63, 308, 771, 1219, 1670, 2266
BseMI	GCAATG	1 cut(s)	1144
BseMII	CTCAG	6 cut(s)	106, 819, 1230, 1466, 1644, 1820
BseNI	ACTGG	5 cut(s)	59, 790, 1080, 1698, 1807
BseRI	GAGGAG	1 cut(s)	1386
BseSI	GKGCMC	3 cut(s)	994, 1214, 2101
BseXI	GCAGC	9 cut(s)	29, 79, 281, 394, 472, 727, 811, 1276, 1417
BseYI	CCCAGC	2 cut(s)	11, 181
BshFI	GGCC	6 cut(s)	528, 987, 1212, 1480, 1727, 2223
BsiHKAI	GWGCWC	3 cut(s)	1044, 1286, 2101
BsiHKCI	CYCGRG	3 cut(s)	397, 948, 1037
BsiSI	CCGG	5 cut(s)	7, 703, 765, 1313, 1664
BslFI	GGGAC	4 cut(s)	249, 1345, 2006, 2213
BslI	CCNNNNNNNGG	7 cut(s)	13, 63, 308, 771, 1219, 1670, 2266
BsmAI	GTCTC	1 cut(s)	1097
BsmBI	CGTCTC	1 cut(s)	1097
BsmFI	GGGAC	4 cut(s)	249, 1345, 2006, 2213
BsnI	GGCC	6 cut(s)	528, 987, 1212, 1480, 1727, 2223
BsoBI	CYCGRG	3 cut(s)	397, 948, 1037
Bsp120I	GGGCCC	1 cut(s)	1210
Bsp1286I	GDGCHC	5 cut(s)	994, 1044, 1214, 1286, 2101
Bsp1407I	TGTACA	1 cut(s)	339
Bsp143I	GATC	8 cut(s)	433, 478, 1131, 1558, 1735, 1900, 1957, 2154
BspACI	CCGC	7 cut(s)	233, 378, 1135, 1251, 1392, 1686, 2267
BspANI	GGCC	6 cut(s)	528, 987, 1212, 1480, 1727, 2223
BspCNI	CTCAG	6 cut(s)	105, 820, 1229, 1467, 1645, 1821
BspHI	TCATGA	3 cut(s)	1350, 1513, 1542
BspLI	GGNNCC	4 cut(s)	776, 1133, 1212, 1213
BspMAI	CTGCAG	1 cut(s)	724
BspMI	ACCTGC	1 cut(s)	713
BspPI	GGATC	5 cut(s)	428, 486, 1126, 1139, 1952
BspTI	CTTAAG	1 cut(s)	136
BsrBI	CCGCTC	1 cut(s)	1394
BsrDI	GCAATG	1 cut(s)	1144
BsrFI	RCCGGY	1 cut(s)	764
BsrGI	TGTACA	1 cut(s)	339
BsrI	ACTGG	5 cut(s)	59, 790, 1080, 1698, 1807
BssAI	RCCGGY	1 cut(s)	764
BssECI	CCNNGG	5 cut(s)	733, 1234, 1662, 1761, 2025
BssMI	GATC	8 cut(s)	433, 478, 1131, 1558, 1735, 1900, 1957, 2154
BssNAI	GTATAC	1 cut(s)	1797
BssT1I	CCWWGG	2 cut(s)	733, 2025
Bst1107I	GTATAC	1 cut(s)	1797
Bst2UI	CCWGG	2 cut(s)	1236, 2133
Bst4CI	ACNGT	4 cut(s)	685, 840, 1681, 1912
Bst6I	CTCTTC	2 cut(s)	1248, 2058
BstAFI	CTTAAG	1 cut(s)	136
BstAUI	TGTACA	1 cut(s)	339
BstBAI	YACGTR	1 cut(s)	800
BstC8I	GCNNGC	4 cut(s)	1231, 1253, 1389, 1650
BstDEI	CTNAG	8 cut(s)	92, 828, 1216, 1341, 1475, 1653, 1829, 2295
BstDSI	CCRYGG	1 cut(s)	1761
BstEII	GGTNACC	1 cut(s)	1369
BstF5I	GGATG	6 cut(s)	699, 1033, 1474, 1870, 1956, 2128
BstKTI	GATC	8 cut(s)	436, 481, 1134, 1561, 1738, 1903, 1960, 2157
BstMAI	GTCTC	1 cut(s)	1097
BstMBI	GATC	8 cut(s)	433, 478, 1131, 1558, 1735, 1900, 1957, 2154
BstMWI	GCNNNNNNNGC	6 cut(s)	17, 230, 554, 1261, 1436, 1888
BstNI	CCWGG	2 cut(s)	1236, 2133
BstNSI	RCATGY	4 cut(s)	346, 1408, 1458, 1937
BstPI	GGTNACC	1 cut(s)	1369
BstSCI	CCNGG	5 cut(s)	6, 1234, 1312, 1662, 2131
BstSFI	CTRYAG	3 cut(s)	199, 562, 720
BstSLI	GKGCMC	3 cut(s)	994, 1214, 2101
BstV1I	GCAGC	9 cut(s)	29, 79, 281, 394, 472, 727, 811, 1276, 1417
BstV2I	GAAGAC	5 cut(s)	201, 255, 518, 813, 2084
BstX2I	RGATCY	3 cut(s)	1131, 1735, 1957
BstYI	RGATCY	3 cut(s)	1131, 1735, 1957
BstZ17I	GTATAC	1 cut(s)	1797
BsuI	GTATCC	1 cut(s)	1915
BsuRI	GGCC	6 cut(s)	528, 987, 1212, 1480, 1727, 2223
BtgI	CCRYGG	1 cut(s)	1761
BtsCI	GGATG	6 cut(s)	699, 1033, 1474, 1870, 1956, 2128
BtsI	GCAGTG	2 cut(s)	717, 1940
BtsIMutI	CAGTG	7 cut(s)	717, 783, 921, 1073, 1224, 1940, 2164
BveI	ACCTGC	1 cut(s)	713
Cac8I	GCNNGC	4 cut(s)	1231, 1253, 1389, 1650
CaiI	CAGNNNCTG	1 cut(s)	1445
CciI	TCATGA	3 cut(s)	1350, 1513, 1542
Cfr10I	RCCGGY	1 cut(s)	764
Cfr13I	GGNCC	4 cut(s)	526, 775, 1210, 1211
CseI	GACGC	1 cut(s)	1837
Csp6I	GTAC	3 cut(s)	340, 1108, 1239
CviQI	GTAC	3 cut(s)	340, 1108, 1239
DdeI	CTNAG	8 cut(s)	92, 828, 1216, 1341, 1475, 1653, 1829, 2295
DpnI	GATC	8 cut(s)	435, 480, 1133, 1560, 1737, 1902, 1959, 2156
DpnII	GATC	8 cut(s)	433, 478, 1131, 1558, 1735, 1900, 1957, 2154
DriI	GACNNNNNGTC	1 cut(s)	1975
EaeI	YGGCCR	1 cut(s)	985
Eam1104I	CTCTTC	2 cut(s)	1248, 2058
Eam1105I	GACNNNNNGTC	1 cut(s)	1975
EarI	CTCTTC	2 cut(s)	1248, 2058
Ecl136II	GAGCTC	1 cut(s)	1042
Eco130I	CCWWGG	2 cut(s)	733, 2025
Eco147I	AGGCCT	2 cut(s)	1480, 2223
Eco24I	GRGCYC	2 cut(s)	1044, 1214
Eco47I	GGWCC	1 cut(s)	775
Eco53kI	GAGCTC	1 cut(s)	1042
Eco57I	CTGAAG	4 cut(s)	249, 491, 945, 1752
Eco72I	CACGTG	1 cut(s)	800
Eco88I	CYCGRG	3 cut(s)	397, 948, 1037
Eco91I	GGTNACC	1 cut(s)	1369
EcoICRI	GAGCTC	1 cut(s)	1042
EcoO109I	RGGNCCY	2 cut(s)	775, 1211
EcoO65I	GGTNACC	1 cut(s)	1369
EcoRI	GAATTC	1 cut(s)	172
EcoRII	CCWGG	2 cut(s)	1234, 2131
EcoT14I	CCWWGG	2 cut(s)	733, 2025
EcoT22I	ATGCAT	1 cut(s)	860
EcoT38I	GRGCYC	2 cut(s)	1044, 1214
ErhI	CCWWGG	2 cut(s)	733, 2025
Esp3I	CGTCTC	1 cut(s)	1097
FaqI	GGGAC	4 cut(s)	249, 1345, 2006, 2213
FauI	CCCGC	2 cut(s)	226, 1244
FauNDI	CATATG	1 cut(s)	976
FbaI	TGATCA	1 cut(s)	2154
FblI	GTMKAC	1 cut(s)	1796
FokI	GGATG	6 cut(s)	686, 1020, 1481, 1877, 1963, 2135
FriOI	GRGCYC	2 cut(s)	1044, 1214
GsaI	CCCAGC	2 cut(s)	15, 185
GsuI	CTGGAG	3 cut(s)	807, 1896, 2154
HaeIII	GGCC	6 cut(s)	528, 987, 1212, 1480, 1727, 2223
HapII	CCGG	5 cut(s)	7, 703, 765, 1313, 1664
HgaI	GACGC	1 cut(s)	1837
HpaII	CCGG	5 cut(s)	7, 703, 765, 1313, 1664
HphI	GGTGA	6 cut(s)	1167, 1234, 1685, 1825, 2164, 2281
Hpy166II	GTNNAC	7 cut(s)	340, 870, 1110, 1691, 1761, 1797, 2099
Hpy8I	GTNNAC	7 cut(s)	340, 870, 1110, 1691, 1761, 1797, 2099
Hpy99I	CGWCG	3 cut(s)	1853, 1888, 2256
HpyAV	CCTTC	8 cut(s)	447, 464, 515, 625, 1165, 1518, 1638, 2213
HpyCH4III	ACNGT	4 cut(s)	685, 840, 1681, 1912
HpyCH4IV	ACGT	6 cut(s)	799, 903, 1106, 1780, 1886, 2202
HpyF10VI	GCNNNNNNNGC	6 cut(s)	17, 230, 554, 1261, 1436, 1888
HpyF3I	CTNAG	8 cut(s)	92, 828, 1216, 1341, 1475, 1653, 1829, 2295
HpySE526I	ACGT	6 cut(s)	799, 903, 1106, 1780, 1886, 2202
Ksp22I	TGATCA	1 cut(s)	2154
Kzo9I	GATC	8 cut(s)	433, 478, 1131, 1558, 1735, 1900, 1957, 2154
LmnI	GCTCC	2 cut(s)	1047, 1399
Lsp1109I	GCAGC	9 cut(s)	29, 79, 281, 394, 472, 727, 811, 1276, 1417
LweI	GCATC	5 cut(s)	263, 497, 708, 822, 867
MaeII	ACGT	6 cut(s)	799, 903, 1106, 1780, 1886, 2202
MaeIII	GTNAC	6 cut(s)	84, 295, 1369, 1771, 1906, 1967
MalI	GATC	8 cut(s)	435, 480, 1133, 1560, 1737, 1902, 1959, 2156
MbiI	CCGCTC	1 cut(s)	1394
MboI	GATC	8 cut(s)	433, 478, 1131, 1558, 1735, 1900, 1957, 2154
MfeI	CAATTG	1 cut(s)	444
MflI	RGATCY	3 cut(s)	1131, 1735, 1957
MhlI	GDGCHC	5 cut(s)	994, 1044, 1214, 1286, 2101
MlyI	GAGTC	5 cut(s)	292, 540, 875, 1540, 1976
Mph1103I	ATGCAT	1 cut(s)	860
MroXI	GAANNNNTTC	2 cut(s)	917, 1737
MseI	TTAA	6 cut(s)	137, 965, 1181, 1614, 1698, 2051
MslI	CAYNNNNRTG	1 cut(s)	819
MspA1I	CMGCKG	1 cut(s)	1756
MspCI	CTTAAG	1 cut(s)	136
MspI	CCGG	5 cut(s)	7, 703, 765, 1313, 1664
MspR9I	CCNGG	5 cut(s)	8, 1236, 1314, 1664, 2133
MunI	CAATTG	1 cut(s)	444
MvaI	CCWGG	2 cut(s)	1236, 2133
MwoI	GCNNNNNNNGC	6 cut(s)	17, 230, 554, 1261, 1436, 1888
NciI	CCSGG	3 cut(s)	8, 1314, 1664
NdeI	CATATG	1 cut(s)	976
NdeII	GATC	8 cut(s)	433, 478, 1131, 1558, 1735, 1900, 1957, 2154
NlaIV	GGNNCC	4 cut(s)	776, 1133, 1212, 1213
NmeAIII	GCCGAG	1 cut(s)	554
NmuCI	GTSAC	5 cut(s)	84, 295, 1771, 1906, 1967
NsiI	ATGCAT	1 cut(s)	860
NspI	RCATGY	4 cut(s)	346, 1408, 1458, 1937
PaeR7I	CTCGAG	1 cut(s)	948
PagI	TCATGA	3 cut(s)	1350, 1513, 1542
PceI	AGGCCT	2 cut(s)	1480, 2223
PciI	ACATGT	4 cut(s)	342, 1404, 1454, 1933
PcsI	WCGNNNNNNNCGW	2 cut(s)	904, 955
PdmI	GAANNNNTTC	2 cut(s)	917, 1737
PleI	GAGTC	5 cut(s)	292, 539, 874, 1540, 1976
PmaCI	CACGTG	1 cut(s)	800
PmlI	CACGTG	1 cut(s)	800
PpsI	GAGTC	5 cut(s)	292, 539, 874, 1540, 1976
Ppu21I	YACGTR	1 cut(s)	800
PpuMI	RGGWCCY	1 cut(s)	775
PscI	ACATGT	4 cut(s)	342, 1404, 1454, 1933
Psp124BI	GAGCTC	1 cut(s)	1044
Psp5II	RGGWCCY	1 cut(s)	775
Psp6I	CCWGG	2 cut(s)	1234, 2131
PspCI	CACGTG	1 cut(s)	800
PspEI	GGTNACC	1 cut(s)	1369
PspFI	CCCAGC	2 cut(s)	11, 181
PspGI	CCWGG	2 cut(s)	1234, 2131
PspN4I	GGNNCC	4 cut(s)	776, 1133, 1212, 1213
PspOMI	GGGCCC	1 cut(s)	1210
PspPI	GGNCC	4 cut(s)	526, 775, 1210, 1211
PspPPI	RGGWCCY	1 cut(s)	775
PstI	CTGCAG	1 cut(s)	724
PstNI	CAGNNNCTG	1 cut(s)	1445
PsuI	RGATCY	3 cut(s)	1131, 1735, 1957
PvuII	CAGCTG	1 cut(s)	1756
RsaI	GTAC	3 cut(s)	341, 1109, 1240
RsaNI	GTAC	3 cut(s)	340, 1108, 1239
RseI	CAYNNNNRTG	1 cut(s)	819
SacI	GAGCTC	1 cut(s)	1044
SaqAI	TTAA	6 cut(s)	137, 965, 1181, 1614, 1698, 2051
Sau3AI	GATC	8 cut(s)	433, 478, 1131, 1558, 1735, 1900, 1957, 2154
Sau96I	GGNCC	4 cut(s)	526, 775, 1210, 1211
SchI	GAGTC	5 cut(s)	292, 540, 875, 1540, 1976
ScrFI	CCNGG	5 cut(s)	8, 1236, 1314, 1664, 2133
SduI	GDGCHC	5 cut(s)	994, 1044, 1214, 1286, 2101
SfaNI	GCATC	5 cut(s)	263, 497, 708, 822, 867
SfcI	CTRYAG	3 cut(s)	199, 562, 720
Sfr274I	CTCGAG	1 cut(s)	948
SinI	GGWCC	1 cut(s)	775
SlaI	CTCGAG	1 cut(s)	948
SmiMI	CAYNNNNRTG	1 cut(s)	819
SmlI	CTYRAG	3 cut(s)	136, 948, 2225
SmoI	CTYRAG	3 cut(s)	136, 948, 2225
SseBI	AGGCCT	2 cut(s)	1480, 2223
SsiI	CCGC	7 cut(s)	233, 378, 1135, 1251, 1392, 1686, 2267
SspI	AATATT	1 cut(s)	1051
SstI	GAGCTC	1 cut(s)	1044
StuI	AGGCCT	2 cut(s)	1480, 2223
StyD4I	CCNGG	5 cut(s)	6, 1234, 1312, 1662, 2131
StyI	CCWWGG	2 cut(s)	733, 2025
TaaI	ACNGT	4 cut(s)	685, 840, 1681, 1912
TaiI	ACGT	6 cut(s)	802, 906, 1109, 1783, 1889, 2205
TaqI	TCGA	7 cut(s)	53, 624, 898, 949, 1851, 1903, 2254
TaqII	GACCGA	1 cut(s)	825
TatI	WGTACW	1 cut(s)	339
TauI	GCSGC	1 cut(s)	1394
Tru1I	TTAA	6 cut(s)	137, 965, 1181, 1614, 1698, 2051
Tru9I	TTAA	6 cut(s)	137, 965, 1181, 1614, 1698, 2051
TscAI	CASTG	7 cut(s)	724, 790, 928, 1080, 1224, 1947, 2164
TseFI	GTSAC	5 cut(s)	84, 295, 1771, 1906, 1967
TseI	GCWGC	9 cut(s)	17, 67, 269, 407, 485, 740, 824, 1264, 1430
Tsp45I	GTSAC	5 cut(s)	84, 295, 1771, 1906, 1967
TspGWI	ACGGA	2 cut(s)	665, 2096
TspRI	CASTG	7 cut(s)	724, 790, 928, 1080, 1224, 1947, 2164
Vha464I	CTTAAG	1 cut(s)	136
VneI	GTGCAC	1 cut(s)	2097
VpaK11BI	GGWCC	1 cut(s)	775
XapI	RAATTY	3 cut(s)	48, 172, 1195
XceI	RCATGY	4 cut(s)	346, 1408, 1458, 1937
XhoI	CTCGAG	1 cut(s)	948
XmiI	GTMKAC	1 cut(s)	1796
XmnI	GAANNNNTTC	2 cut(s)	917, 1737
Zsp2I	ATGCAT	1 cut(s)	860

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.