Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0002312

Physical Location & Seq

Genomic Coordinates Forward (+)

53616846 .. 53617214

Gene Structure 369 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG309200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 174 bp

ATGGCCATTTTTGCACTTCTTGGAAAATGTTTTGGGGATATGGATCCCTTAAAGGAAAATGGGCAGCTGGTAATTAGTGTAGATGGTAATGTAACACAGCTACATAAGCGCGGTGGGAAGTTTGAGAATGAAAGCAGTGAAGGTCTCAAGGAACAAATTGTGCTTGTGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016073 GO:0016180 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

Beta-Casp CPSF73-100_C Lactamase_B Lactamase_B_6 RMMBL

Protein Analysis

57

Amino Acids

6.22

Weight (kDa)

5.12

Isoelectric Point (pI)

19.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61010 AT1G61010 AT1G61010 AT1G61010 AT1G61010
fragaria_vesca	FvH4_4g07000 FvH4_4g07000 FvH4_5g28761 FvH4_5g28770 FvH4_7g26770
malus_domestica	MD08G1237400.v1.1 MD15G1429300.v1.1
prunus_persica	Prupe.1G574800_v2.0.a1 Prupe.1G574800_v2.0.a1 Prupe.1G574900_v2.0.a1 Prupe.I006100_v2.0.a1 Prupe.I006100_v2.0.a1 Prupe.I006200_v2.0.a1
pyrus_communis	pycom08g20590 pycom08g20600 pycom15g37980 pycom15g37990
rosa_chinensis	RchiOBHm_Chr1g0363271 RchiOBHm_Chr4g0399131 RchiOBHm_Chr7g0220981
rosa_laevigata	RLG00000002186 RLG00000009298
rosa_multiflora	Rmu_sc0002002.1_g000015 Rmu_sc0002105.1_g000022
rosa_roxburghii	Rroxscaffold_3G00238830 Rroxscaffold_5G00344090
rosa_rugosa	Rorug04G0014100 Rorug07G0199100
rosa_samantha	Rh1DG309200 Rh4BG089900 Rh4DG084500 Rh7AG339000 Rh7BG329800 Rh7CG357100 Rh7DG337800
rosa_wichuraiana	Rw4G007590 Rw7G028840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	111
AciI	CCGC	1 cut(s)	111
AclWI	GGATC	2 cut(s)	38, 51
AcoI	YGGCCR	1 cut(s)	3
AluBI	AGCT	2 cut(s)	67, 100
AluI	AGCT	2 cut(s)	67, 100
Alw26I	GTCTC	1 cut(s)	149
AlwI	GGATC	2 cut(s)	38, 51
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	64
AspLEI	GCGC	1 cut(s)	111
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	43
BbvI	GCAGC	1 cut(s)	76
BccI	CCATC	1 cut(s)	77
BcoDI	GTCTC	1 cut(s)	149
BisI	GCNGC	1 cut(s)	65
BlsI	GCNGC	1 cut(s)	66
BmiI	GGNNCC	1 cut(s)	45
BpuEI	CTTGAG	1 cut(s)	131
BsaBI	GATNNNNATC	1 cut(s)	42
BsaI	GGTCTC	1 cut(s)	149
Bse8I	GATNNNNATC	1 cut(s)	42
BseJI	GATNNNNATC	1 cut(s)	42
BseXI	GCAGC	1 cut(s)	76
Bsh1236I	CGCG	1 cut(s)	111
BshFI	GGCC	1 cut(s)	5
BsmAI	GTCTC	1 cut(s)	149
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	149
Bsp143I	GATC	1 cut(s)	43
BspACI	CCGC	1 cut(s)	111
BspANI	GGCC	1 cut(s)	5
BspFNI	CGCG	1 cut(s)	111
BspLI	GGNNCC	1 cut(s)	45
BspPI	GGATC	2 cut(s)	38, 51
BspTNI	GGTCTC	1 cut(s)	149
BssMI	GATC	1 cut(s)	43
BstFNI	CGCG	1 cut(s)	111
BstHHI	GCGC	1 cut(s)	111
BstKTI	GATC	1 cut(s)	46
BstMAI	GTCTC	1 cut(s)	149
BstMBI	GATC	1 cut(s)	43
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 106
BstUI	CGCG	1 cut(s)	111
BstV1I	GCAGC	1 cut(s)	76
BstX2I	RGATCY	1 cut(s)	43
BstYI	RGATCY	1 cut(s)	43
BsuRI	GGCC	1 cut(s)	5
BtsI	GCAGTG	1 cut(s)	142
BtsIMutI	CAGTG	1 cut(s)	142
CfoI	GCGC	1 cut(s)	111
CviJI	RGCY	3 cut(s)	5, 67, 100
CviKI_1	RGCY	3 cut(s)	5, 67, 100
DpnI	GATC	1 cut(s)	45
DpnII	GATC	1 cut(s)	43
EaeI	YGGCCR	1 cut(s)	3
Eco31I	GGTCTC	1 cut(s)	149
FaiI	YATR	2 cut(s)	41, 105
Fnu4HI	GCNGC	1 cut(s)	65
Fsp4HI	GCNGC	1 cut(s)	65
GlaI	GCGC	1 cut(s)	110
GluI	GCNGC	1 cut(s)	65
HaeIII	GGCC	1 cut(s)	5
HhaI	GCGC	1 cut(s)	111
Hin6I	GCGC	1 cut(s)	109
HinP1I	GCGC	1 cut(s)	109
Hpy166II	GTNNAC	1 cut(s)	169
Hpy8I	GTNNAC	1 cut(s)	169
HpyAV	CCTTC	1 cut(s)	134
HpyCH4V	TGCA	1 cut(s)	14
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 106
HspAI	GCGC	1 cut(s)	109
Kzo9I	GATC	1 cut(s)	43
LpnPI	CCDG	1 cut(s)	53
Lsp1109I	GCAGC	1 cut(s)	76
MaeIII	GTNAC	1 cut(s)	91
MalI	GATC	1 cut(s)	45
MboI	GATC	1 cut(s)	43
MflI	RGATCY	1 cut(s)	43
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	72, 156
MluNI	TGGCCA	1 cut(s)	5
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	50
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	67
MvnI	CGCG	1 cut(s)	111
MwoI	GCNNNNNNNGC	2 cut(s)	11, 106
NdeII	GATC	1 cut(s)	43
NlaIV	GGNNCC	1 cut(s)	45
PkrI	GCNGC	1 cut(s)	66
PspN4I	GGNNCC	1 cut(s)	45
PsuI	RGATCY	1 cut(s)	43
PvuII	CAGCTG	1 cut(s)	67
SaqAI	TTAA	1 cut(s)	50
SatI	GCNGC	1 cut(s)	65
Sau3AI	GATC	1 cut(s)	43
SetI	ASST	3 cut(s)	69, 102, 145
SgeI	CNNG	4 cut(s)	32, 80, 122, 160
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
Sse9I	AATT	2 cut(s)	72, 156
SsiI	CCGC	1 cut(s)	111
TasI	AATT	2 cut(s)	72, 156
Tru1I	TTAA	1 cut(s)	50
Tru9I	TTAA	1 cut(s)	50
TscAI	CASTG	1 cut(s)	142
TseI	GCWGC	1 cut(s)	64
TspDTI	ATGAA	1 cut(s)	144
TspRI	CASTG	1 cut(s)	142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.