Cleavage and polyadenylation specificity factor subunit
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G61010 AT1G61010 AT1G61010 AT1G61010 AT1G61010 |
| fragaria_vesca | FvH4_4g07000 FvH4_4g07000 FvH4_5g28761 FvH4_5g28770 FvH4_7g26770 |
| malus_domestica | MD08G1237400.v1.1 MD15G1429300.v1.1 |
| prunus_persica | Prupe.1G574800_v2.0.a1 Prupe.1G574800_v2.0.a1 Prupe.1G574900_v2.0.a1 Prupe.I006100_v2.0.a1 Prupe.I006100_v2.0.a1 Prupe.I006200_v2.0.a1 |
| pyrus_communis | pycom08g20590 pycom08g20600 pycom15g37980 pycom15g37990 |
| rosa_chinensis | RchiOBHm_Chr1g0363271 RchiOBHm_Chr4g0399131 RchiOBHm_Chr7g0220981 |
| rosa_laevigata | RLG00000002186 RLG00000009298 |
| rosa_multiflora | Rmu_sc0002002.1_g000015 Rmu_sc0002105.1_g000022 |
| rosa_roxburghii | Rroxscaffold_3G00238830 Rroxscaffold_5G00344090 |
| rosa_rugosa | Rorug04G0014100 Rorug07G0199100 |
| rosa_samantha | Rh1DG309200 Rh4BG089900 Rh4DG084500 Rh7AG339000 Rh7BG329800 Rh7CG357100 Rh7DG337800 |
| rosa_wichuraiana | Rw4G007590 Rw7G028840 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 1059 |
| AciI | CCGC | 3 cut(s) | 149, 520, 894 |
| AclWI | GGATC | 4 cut(s) | 388, 511, 524, 1160 |
| AcoI | YGGCCR | 1 cut(s) | 370 |
| AcsI | RAATTY | 1 cut(s) | 580 |
| AcuI | CTGAAG | 3 cut(s) | 614, 894, 1050 |
| AcvI | CACGTG | 1 cut(s) | 185 |
| AfaI | GTAC | 2 cut(s) | 554, 1260 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 604, 878 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1183 |
| AhlI | ACTAGT | 1 cut(s) | 1357 |
| AjnI | CCWGG | 2 cut(s) | 697, 1339 |
| AleI | CACNNNNGTG | 2 cut(s) | 964, 1196 |
| AluBI | AGCT | 6 cut(s) | 427, 652, 725, 845, 964, 1390 |
| AluI | AGCT | 6 cut(s) | 427, 652, 725, 845, 964, 1390 |
| Alw21I | GWGCWC | 4 cut(s) | 379, 429, 671, 971 |
| Alw26I | GTCTC | 3 cut(s) | 209, 482, 1436 |
| Alw44I | GTGCAC | 1 cut(s) | 967 |
| AlwI | GGATC | 4 cut(s) | 388, 511, 524, 1160 |
| AoxI | GGCC | 2 cut(s) | 370, 595 |
| ApaLI | GTGCAC | 1 cut(s) | 967 |
| ApeKI | GCWGC | 3 cut(s) | 125, 209, 649 |
| ApoI | RAATTY | 1 cut(s) | 580 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 302 |
| AspS9I | GGNCC | 1 cut(s) | 596 |
| AsuHPI | GGTGA | 7 cut(s) | 185, 552, 619, 893, 973, 1126, 1132 |
| BaeGI | GKGCMC | 1 cut(s) | 971 |
| BamHI | GGATCC | 1 cut(s) | 516 |
| BanII | GRGCYC | 1 cut(s) | 429 |
| BbrPI | CACGTG | 1 cut(s) | 185 |
| BbsI | GAAGAC | 4 cut(s) | 198, 620, 872, 946 |
| Bbv12I | GWGCWC | 4 cut(s) | 379, 429, 671, 971 |
| BbvI | GCAGC | 3 cut(s) | 112, 196, 661 |
| BccI | CCATC | 5 cut(s) | 69, 282, 426, 604, 1367 |
| BceAI | ACGGC | 2 cut(s) | 357, 1460 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 78, 112 |
| BciT130I | CCWGG | 2 cut(s) | 699, 1341 |
| BciVI | GTATCC | 1 cut(s) | 1123 |
| BclI | TGATCA | 1 cut(s) | 1108 |
| BcoDI | GTCTC | 3 cut(s) | 209, 482, 1436 |
| BcuI | ACTAGT | 1 cut(s) | 1357 |
| BfaI | CTAG | 4 cut(s) | 621, 722, 1008, 1358 |
| BfuI | GTATCC | 1 cut(s) | 1123 |
| BisI | GCNGC | 3 cut(s) | 126, 210, 650 |
| BlpI | GCTNAGC | 1 cut(s) | 1037 |
| BlsI | GCNGC | 3 cut(s) | 127, 211, 651 |
| Bme1390I | CCNGG | 2 cut(s) | 699, 1341 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1183 |
| BmgT120I | GGNCC | 1 cut(s) | 596 |
| BmiI | GGNNCC | 1 cut(s) | 518 |
| BmrFI | CCNGG | 2 cut(s) | 699, 1341 |
| BmsI | GCATC | 1 cut(s) | 208 |
| BpiI | GAAGAC | 4 cut(s) | 198, 620, 872, 946 |
| BpmI | CTGGAG | 2 cut(s) | 1104, 1362 |
| Bpu10I | CCTNAGC | 1 cut(s) | 423 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1037 |
| BpuEI | CTTGAG | 3 cut(s) | 318, 363, 1418 |
| BsaAI | YACGTR | 1 cut(s) | 185 |
| BsaBI | GATNNNNATC | 3 cut(s) | 60, 475, 995 |
| BsaI | GGTCTC | 2 cut(s) | 209, 1436 |
| BsaJI | CCNNGG | 3 cut(s) | 118, 281, 1233 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 330, 360 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 604, 878 |
| Bse118I | RCCGGY | 3 cut(s) | 107, 195, 1032 |
| Bse1I | ACTGG | 3 cut(s) | 175, 802, 906 |
| Bse3DI | GCAATG | 2 cut(s) | 529, 1094 |
| Bse8I | GATNNNNATC | 3 cut(s) | 60, 475, 995 |
| BseBI | CCWGG | 2 cut(s) | 699, 1341 |
| BseDI | CCNNGG | 3 cut(s) | 118, 281, 1233 |
| BseGI | GGATG | 4 cut(s) | 418, 1078, 1336, 1414 |
| BseJI | GATNNNNATC | 3 cut(s) | 60, 475, 995 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 604, 878 |
| BseMI | GCAATG | 2 cut(s) | 529, 1094 |
| BseMII | CTCAG | 4 cut(s) | 204, 414, 852, 1257 |
| BseNI | ACTGG | 3 cut(s) | 175, 802, 906 |
| BseRI | GAGGAG | 1 cut(s) | 771 |
| BseSI | GKGCMC | 1 cut(s) | 971 |
| BseXI | GCAGC | 3 cut(s) | 112, 196, 661 |
| BshFI | GGCC | 2 cut(s) | 372, 597 |
| BsiHKAI | GWGCWC | 4 cut(s) | 379, 429, 671, 971 |
| BsiSI | CCGG | 3 cut(s) | 108, 196, 1033 |
| BslFI | GGGAC | 2 cut(s) | 730, 1214 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 604, 878 |
| BsmAI | GTCTC | 3 cut(s) | 209, 482, 1436 |
| BsmFI | GGGAC | 2 cut(s) | 730, 1214 |
| BsmI | GAATGC | 1 cut(s) | 84 |
| BsnI | GGCC | 2 cut(s) | 372, 597 |
| Bso31I | GGTCTC | 2 cut(s) | 209, 1436 |
| Bsp1286I | GDGCHC | 4 cut(s) | 379, 429, 671, 971 |
| Bsp143I | GATC | 5 cut(s) | 393, 516, 943, 1108, 1165 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1037 |
| BspACI | CCGC | 3 cut(s) | 149, 520, 894 |
| BspANI | GGCC | 2 cut(s) | 372, 597 |
| BspCNI | CTCAG | 4 cut(s) | 205, 415, 853, 1258 |
| BspLI | GGNNCC | 1 cut(s) | 518 |
| BspPI | GGATC | 4 cut(s) | 388, 511, 524, 1160 |
| BspTNI | GGTCTC | 2 cut(s) | 209, 1436 |
| BsrDI | GCAATG | 2 cut(s) | 529, 1094 |
| BsrFI | RCCGGY | 3 cut(s) | 107, 195, 1032 |
| BsrI | ACTGG | 3 cut(s) | 175, 802, 906 |
| BssAI | RCCGGY | 3 cut(s) | 107, 195, 1032 |
| BssECI | CCNNGG | 3 cut(s) | 118, 281, 1233 |
| BssMI | GATC | 5 cut(s) | 393, 516, 943, 1108, 1165 |
| BssT1I | CCWWGG | 2 cut(s) | 118, 1233 |
| Bst2UI | CCWGG | 2 cut(s) | 699, 1341 |
| Bst4CI | ACNGT | 5 cut(s) | 70, 225, 1021, 1120, 1280 |
| Bst6I | CTCTTC | 2 cut(s) | 1069, 1266 |
| BstBAI | YACGTR | 1 cut(s) | 185 |
| BstC8I | GCNNGC | 2 cut(s) | 616, 858 |
| BstDEI | CTNAG | 7 cut(s) | 213, 423, 726, 861, 1037, 1266, 1503 |
| BstF5I | GGATG | 4 cut(s) | 418, 1078, 1336, 1414 |
| BstKTI | GATC | 5 cut(s) | 396, 519, 946, 1111, 1168 |
| BstMAI | GTCTC | 3 cut(s) | 209, 482, 1436 |
| BstMBI | GATC | 5 cut(s) | 393, 516, 943, 1108, 1165 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 646, 1096 |
| BstNI | CCWGG | 2 cut(s) | 699, 1341 |
| BstNSI | RCATGY | 1 cut(s) | 793 |
| BstSCI | CCNGG | 2 cut(s) | 697, 1339 |
| BstSLI | GKGCMC | 1 cut(s) | 971 |
| BstV1I | GCAGC | 3 cut(s) | 112, 196, 661 |
| BstV2I | GAAGAC | 4 cut(s) | 198, 620, 872, 946 |
| BstX2I | RGATCY | 2 cut(s) | 516, 1165 |
| BstYI | RGATCY | 2 cut(s) | 516, 1165 |
| BsuI | GTATCC | 1 cut(s) | 1123 |
| BsuRI | GGCC | 2 cut(s) | 372, 597 |
| BtsCI | GGATG | 4 cut(s) | 418, 1078, 1336, 1414 |
| BtsI | GCAGTG | 1 cut(s) | 774 |
| BtsIMutI | CAGTG | 4 cut(s) | 168, 306, 774, 1074 |
| Cac8I | GCNNGC | 2 cut(s) | 616, 858 |
| Cfr10I | RCCGGY | 3 cut(s) | 107, 195, 1032 |
| Cfr13I | GGNCC | 1 cut(s) | 596 |
| Csp6I | GTAC | 2 cut(s) | 553, 1259 |
| CviAII | CATG | 7 cut(s) | 113, 505, 790, 950, 1106, 1180, 1304 |
| CviQI | GTAC | 2 cut(s) | 553, 1259 |
| DdeI | CTNAG | 7 cut(s) | 213, 423, 726, 861, 1037, 1266, 1503 |
| DpnI | GATC | 5 cut(s) | 395, 518, 945, 1110, 1167 |
| DpnII | GATC | 5 cut(s) | 393, 516, 943, 1108, 1165 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1183 |
| EaeI | YGGCCR | 1 cut(s) | 370 |
| Eam1104I | CTCTTC | 2 cut(s) | 1069, 1266 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1183 |
| EarI | CTCTTC | 2 cut(s) | 1069, 1266 |
| Ecl136II | GAGCTC | 1 cut(s) | 427 |
| Eco130I | CCWWGG | 2 cut(s) | 118, 1233 |
| Eco24I | GRGCYC | 1 cut(s) | 429 |
| Eco31I | GGTCTC | 2 cut(s) | 209, 1436 |
| Eco53kI | GAGCTC | 1 cut(s) | 427 |
| Eco57I | CTGAAG | 3 cut(s) | 614, 894, 1050 |
| Eco72I | CACGTG | 1 cut(s) | 185 |
| EcoICRI | GAGCTC | 1 cut(s) | 427 |
| EcoRII | CCWGG | 2 cut(s) | 697, 1339 |
| EcoT14I | CCWWGG | 2 cut(s) | 118, 1233 |
| EcoT22I | ATGCAT | 1 cut(s) | 245 |
| EcoT38I | GRGCYC | 1 cut(s) | 429 |
| ErhI | CCWWGG | 2 cut(s) | 118, 1233 |
| FaeI | CATG | 7 cut(s) | 116, 508, 793, 953, 1109, 1183, 1307 |
| FaqI | GGGAC | 2 cut(s) | 730, 1214 |
| FatI | CATG | 7 cut(s) | 112, 504, 789, 949, 1105, 1179, 1303 |
| FauI | CCCGC | 1 cut(s) | 142 |
| FauNDI | CATATG | 1 cut(s) | 259 |
| FbaI | TGATCA | 1 cut(s) | 1108 |
| FblI | GTMKAC | 1 cut(s) | 1059 |
| Fnu4HI | GCNGC | 3 cut(s) | 126, 210, 650 |
| FokI | GGATG | 4 cut(s) | 405, 1085, 1343, 1421 |
| FriOI | GRGCYC | 1 cut(s) | 429 |
| Fsp4HI | GCNGC | 3 cut(s) | 126, 210, 650 |
| FspBI | CTAG | 4 cut(s) | 621, 722, 1008, 1358 |
| GluI | GCNGC | 3 cut(s) | 126, 210, 650 |
| GsuI | CTGGAG | 2 cut(s) | 1104, 1362 |
| HaeIII | GGCC | 2 cut(s) | 372, 597 |
| HapII | CCGG | 3 cut(s) | 108, 196, 1033 |
| Hin1II | CATG | 7 cut(s) | 116, 508, 793, 953, 1109, 1183, 1307 |
| HinfI | GANTC | 8 cut(s) | 159, 251, 303, 771, 1061, 1079, 1247, 1464 |
| HpaII | CCGG | 3 cut(s) | 108, 196, 1033 |
| HphI | GGTGA | 7 cut(s) | 185, 552, 619, 893, 973, 1126, 1132 |
| Hpy166II | GTNNAC | 3 cut(s) | 899, 969, 1060 |
| Hpy188I | TCNGA | 7 cut(s) | 293, 633, 673, 940, 1165, 1189, 1252 |
| Hpy188III | TCNNGA | 4 cut(s) | 380, 391, 422, 1083 |
| Hpy8I | GTNNAC | 3 cut(s) | 899, 969, 1060 |
| Hpy99I | CGWCG | 2 cut(s) | 604, 1464 |
| HpyAV | CCTTC | 6 cut(s) | 550, 707, 742, 846, 1279, 1421 |
| HpyCH4III | ACNGT | 5 cut(s) | 70, 225, 1021, 1120, 1280 |
| HpyCH4IV | ACGT | 2 cut(s) | 184, 1257 |
| HpyCH4V | TGCA | 8 cut(s) | 243, 365, 464, 793, 969, 1105, 1307, 1499 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 646, 1096 |
| HpyF3I | CTNAG | 7 cut(s) | 213, 423, 726, 861, 1037, 1266, 1503 |
| HpySE526I | ACGT | 2 cut(s) | 184, 1257 |
| Hsp92II | CATG | 7 cut(s) | 116, 508, 793, 953, 1109, 1183, 1307 |
| Ksp22I | TGATCA | 1 cut(s) | 1108 |
| Kzo9I | GATC | 5 cut(s) | 393, 516, 943, 1108, 1165 |
| LmnI | GCTCC | 2 cut(s) | 432, 784 |
| Lsp1109I | GCAGC | 3 cut(s) | 112, 196, 661 |
| LweI | GCATC | 1 cut(s) | 208 |
| MaeI | CTAG | 4 cut(s) | 621, 722, 1008, 1358 |
| MaeII | ACGT | 2 cut(s) | 184, 1257 |
| MaeIII | GTNAC | 4 cut(s) | 754, 979, 1114, 1175 |
| MalI | GATC | 5 cut(s) | 395, 518, 945, 1110, 1167 |
| MboI | GATC | 5 cut(s) | 393, 516, 943, 1108, 1165 |
| MboII | GAAGA | 8 cut(s) | 200, 203, 620, 877, 938, 946, 1056, 1283 |
| MflI | RGATCY | 2 cut(s) | 516, 1165 |
| MhlI | GDGCHC | 4 cut(s) | 379, 429, 671, 971 |
| MluCI | AATT | 4 cut(s) | 42, 351, 580, 796 |
| MlyI | GAGTC | 3 cut(s) | 168, 765, 1055 |
| Mph1103I | ATGCAT | 1 cut(s) | 245 |
| MroXI | GAANNNNTTC | 1 cut(s) | 302 |
| MseI | TTAA | 4 cut(s) | 350, 822, 906, 1218 |
| MslI | CAYNNNNRTG | 3 cut(s) | 204, 964, 1196 |
| MspA1I | CMGCKG | 1 cut(s) | 964 |
| MspI | CCGG | 3 cut(s) | 108, 196, 1033 |
| MspR9I | CCNGG | 2 cut(s) | 699, 1341 |
| Mva1269I | GAATGC | 1 cut(s) | 84 |
| MvaI | CCWGG | 2 cut(s) | 699, 1341 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 646, 1096 |
| NdeI | CATATG | 1 cut(s) | 259 |
| NdeII | GATC | 5 cut(s) | 393, 516, 943, 1108, 1165 |
| NlaIII | CATG | 7 cut(s) | 116, 508, 793, 953, 1109, 1183, 1307 |
| NlaIV | GGNNCC | 1 cut(s) | 518 |
| NmeAIII | GCCGAG | 1 cut(s) | 262 |
| NmuCI | GTSAC | 3 cut(s) | 979, 1114, 1175 |
| NsiI | ATGCAT | 1 cut(s) | 245 |
| NspI | RCATGY | 1 cut(s) | 793 |
| OliI | CACNNNNGTG | 2 cut(s) | 964, 1196 |
| PctI | GAATGC | 1 cut(s) | 84 |
| PdmI | GAANNNNTTC | 1 cut(s) | 302 |
| PfeI | GAWTC | 5 cut(s) | 251, 303, 1079, 1247, 1464 |
| PkrI | GCNGC | 3 cut(s) | 127, 211, 651 |
| PleI | GAGTC | 3 cut(s) | 167, 765, 1055 |
| PmaCI | CACGTG | 1 cut(s) | 185 |
| PmlI | CACGTG | 1 cut(s) | 185 |
| PpsI | GAGTC | 3 cut(s) | 167, 765, 1055 |
| Ppu21I | YACGTR | 1 cut(s) | 185 |
| Psp124BI | GAGCTC | 1 cut(s) | 429 |
| Psp6I | CCWGG | 2 cut(s) | 697, 1339 |
| PspCI | CACGTG | 1 cut(s) | 185 |
| PspGI | CCWGG | 2 cut(s) | 697, 1339 |
| PspN4I | GGNNCC | 1 cut(s) | 518 |
| PspPI | GGNCC | 1 cut(s) | 596 |
| PsuI | RGATCY | 2 cut(s) | 516, 1165 |
| PvuII | CAGCTG | 1 cut(s) | 964 |
| RsaI | GTAC | 2 cut(s) | 554, 1260 |
| RsaNI | GTAC | 2 cut(s) | 553, 1259 |
| RseI | CAYNNNNRTG | 3 cut(s) | 204, 964, 1196 |
| SacI | GAGCTC | 1 cut(s) | 429 |
| SaqAI | TTAA | 4 cut(s) | 350, 822, 906, 1218 |
| SatI | GCNGC | 3 cut(s) | 126, 210, 650 |
| Sau3AI | GATC | 5 cut(s) | 393, 516, 943, 1108, 1165 |
| Sau96I | GGNCC | 1 cut(s) | 596 |
| SchI | GAGTC | 3 cut(s) | 168, 765, 1055 |
| ScrFI | CCNGG | 2 cut(s) | 699, 1341 |
| SduI | GDGCHC | 4 cut(s) | 379, 429, 671, 971 |
| SfaNI | GCATC | 1 cut(s) | 208 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 204, 964, 1196 |
| SmlI | CTYRAG | 3 cut(s) | 333, 378, 1433 |
| SmoI | CTYRAG | 3 cut(s) | 333, 378, 1433 |
| SpeI | ACTAGT | 1 cut(s) | 1357 |
| Sse9I | AATT | 4 cut(s) | 42, 351, 580, 796 |
| SsiI | CCGC | 3 cut(s) | 149, 520, 894 |
| SspI | AATATT | 2 cut(s) | 436, 1216 |
| SspMI | CTAG | 4 cut(s) | 621, 722, 1008, 1358 |
| SstI | GAGCTC | 1 cut(s) | 429 |
| StyD4I | CCNGG | 2 cut(s) | 697, 1339 |
| StyI | CCWWGG | 2 cut(s) | 118, 1233 |
| TaaI | ACNGT | 5 cut(s) | 70, 225, 1021, 1120, 1280 |
| TaiI | ACGT | 2 cut(s) | 187, 1260 |
| TaqI | TCGA | 2 cut(s) | 88, 1462 |
| TasI | AATT | 4 cut(s) | 42, 351, 580, 796 |
| TatI | WGTACW | 1 cut(s) | 552 |
| TfiI | GAWTC | 5 cut(s) | 251, 303, 1079, 1247, 1464 |
| Tru1I | TTAA | 4 cut(s) | 350, 822, 906, 1218 |
| Tru9I | TTAA | 4 cut(s) | 350, 822, 906, 1218 |
| TscAI | CASTG | 4 cut(s) | 175, 313, 781, 1074 |
| TseFI | GTSAC | 3 cut(s) | 979, 1114, 1175 |
| TseI | GCWGC | 3 cut(s) | 125, 209, 649 |
| Tsp45I | GTSAC | 3 cut(s) | 979, 1114, 1175 |
| TspDTI | ATGAA | 5 cut(s) | 521, 756, 938, 1292, 1440 |
| TspGWI | ACGGA | 2 cut(s) | 194, 1003 |
| TspRI | CASTG | 4 cut(s) | 175, 313, 781, 1074 |
| VneI | GTGCAC | 1 cut(s) | 967 |
| XapI | RAATTY | 1 cut(s) | 580 |
| XceI | RCATGY | 1 cut(s) | 793 |
| XmiI | GTMKAC | 1 cut(s) | 1059 |
| XmnI | GAANNNNTTC | 1 cut(s) | 302 |
| XspI | CTAG | 4 cut(s) | 621, 722, 1008, 1358 |
| Zsp2I | ATGCAT | 1 cut(s) | 245 |