Prupe.I006200_v2.0.a1

Cleavage and polyadenylation specificity factor subunit

Basic Information

Type: gene
Biological Identity
prunus_persica
scaffold_97
Physical Location & Seq
Reverse (-)
5637 .. 7829
2193 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.I006200.1

Sequence Viewer

Length: 1506 bp
ATGTTGTTTGATGAGCAGGACATAAATGCCTCAATGGATAAAATTGAGGTTATTGATTTCCATCAAACAGTAGAGGTGGAGGGCATTCGATTTTGGTGCTATACTGCCGGTCATGTCCTTGGTGCTGCTATGTTTATGGTTGATATTGCGGGTGTTAGAGTCCTCTACACTGGTGATTATTCACGTGAAGAAGACCGGCATCTCCGTGCTGCTGAGACCCCACAGTTCTCCCCTGATGTATGCATTATTGAATCCACATATGGTGTCCAGCACCATCAACCTCGGCACATCAGAGAGAAGCGATTCACTGATGTTATCCATTCAACAATCTCTCAAGGAGGTCGTGTCTTAATTCCTGCTTTTGCACTTGGCCGTGCTCAAGAACTTCTCCTGATCCTTGATGAGTATTGGGCAAACCATCCTGAGCTCCAAAATATTCCTATTTATTATGCTTCCCCACTTGCAAAAAGATGTTTATCTGTATATGAGACATACACCCTTTCCATGAACGATAGGATCCGCAATGCGAAGTCAAATCCCTTCGTATTCAAGTACATATCACCACTAAAGAGCATTGAAAATTTCAAAGATGTAGGCCCGTCGGTGGTGATGGCAAGCCCTAGTGGTCTTCAGAGTGGGCTGTCAAGGCAGCTATTTGATATGTGGTGCTCTGATAAGAAAAACGCTTGTGTTATTCCAGGTTATGTGGTTGAAGGGACACTAGCTAAGACAATCATCAATGAACCGAAGGAGGTAACTCTTTTGAATGGACTCACTGCTCCTCTCAACATGCAGAATTGCCAGTCTGTTGAAATGTATTTTAACTCGCAGAAAATGGCAAAAGCTATTGGAAGGCTTGCTGAGAAGACCCCTGAAGTTGGTGAAAGTGTCGGCGGTTTACTGGTTAAAAAAGGCTTTAGTTATCAAATAATGGCTTCTGATGATCTTCATGTCTTCTCACAGCTGTGCACAGCAAATGTCACCCAACGGATTACTATCCCGTTTGCTAGTGGCTTTACTGTGATAAAACACCGGCTTAGCCAAATATATGAGAGTGTAGACTCTTCAGTGGATGAGGAATCTGGAGTGCCAACATTGCGAGTGCATGATCAGGTGACGGTGAAGCAGGATACAGATAAACACATTTCACTACATTGGTCGTCAGATCCTATAAGTGACATGGTGTCAGACACCATTGTGGCTCTTATTTTGAATATTAACCGAGAAGTCCCCAAGGTAGTTGTTGAATCAGAGGACGTACAAACTGAGGAAGAGAACGGTAAGAAGGTGGAAAAGGTCATTCATGCACTTCTTGTATCACTCTTTGGGGATGTGAAGCCTGGAGGAAATGGGAAACTAGTGATTAGGGTTGATGGGAATGTGGCACAGCTTGATAAACAGAGTGGGGATGTTGAGAGTGAAAATGAAGGTCTCAAGGAAAAAGTAAAGGTGGCATTTCGTCGAATCCAAAGTGCCGTGAAGCCAATCCCTCTCTCTGCAACTTAG

Protein Analysis

502

Amino Acids

55.8

Weight (kDa)

5.67

Isoelectric Point (pI)

40.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1059
AciI CCGC 3 cut(s) 149, 520, 894
AclWI GGATC 4 cut(s) 388, 511, 524, 1160
AcoI YGGCCR 1 cut(s) 370
AcsI RAATTY 1 cut(s) 580
AcuI CTGAAG 3 cut(s) 614, 894, 1050
AcvI CACGTG 1 cut(s) 185
AfaI GTAC 2 cut(s) 554, 1260
AfiI CCNNNNNNNGG 2 cut(s) 604, 878
AhdI GACNNNNNGTC 1 cut(s) 1183
AhlI ACTAGT 1 cut(s) 1357
AjnI CCWGG 2 cut(s) 697, 1339
AleI CACNNNNGTG 2 cut(s) 964, 1196
AluBI AGCT 6 cut(s) 427, 652, 725, 845, 964, 1390
AluI AGCT 6 cut(s) 427, 652, 725, 845, 964, 1390
Alw21I GWGCWC 4 cut(s) 379, 429, 671, 971
Alw26I GTCTC 3 cut(s) 209, 482, 1436
Alw44I GTGCAC 1 cut(s) 967
AlwI GGATC 4 cut(s) 388, 511, 524, 1160
AoxI GGCC 2 cut(s) 370, 595
ApaLI GTGCAC 1 cut(s) 967
ApeKI GCWGC 3 cut(s) 125, 209, 649
ApoI RAATTY 1 cut(s) 580
Asp700I GAANNNNTTC 1 cut(s) 302
AspS9I GGNCC 1 cut(s) 596
AsuHPI GGTGA 7 cut(s) 185, 552, 619, 893, 973, 1126, 1132
BaeGI GKGCMC 1 cut(s) 971
BamHI GGATCC 1 cut(s) 516
BanII GRGCYC 1 cut(s) 429
BbrPI CACGTG 1 cut(s) 185
BbsI GAAGAC 4 cut(s) 198, 620, 872, 946
Bbv12I GWGCWC 4 cut(s) 379, 429, 671, 971
BbvI GCAGC 3 cut(s) 112, 196, 661
BccI CCATC 5 cut(s) 69, 282, 426, 604, 1367
BceAI ACGGC 2 cut(s) 357, 1460
BcgI CGANNNNNNTGC 2 cut(s) 78, 112
BciT130I CCWGG 2 cut(s) 699, 1341
BciVI GTATCC 1 cut(s) 1123
BclI TGATCA 1 cut(s) 1108
BcoDI GTCTC 3 cut(s) 209, 482, 1436
BcuI ACTAGT 1 cut(s) 1357
BfaI CTAG 4 cut(s) 621, 722, 1008, 1358
BfuI GTATCC 1 cut(s) 1123
BisI GCNGC 3 cut(s) 126, 210, 650
BlpI GCTNAGC 1 cut(s) 1037
BlsI GCNGC 3 cut(s) 127, 211, 651
Bme1390I CCNGG 2 cut(s) 699, 1341
BmeRI GACNNNNNGTC 1 cut(s) 1183
BmgT120I GGNCC 1 cut(s) 596
BmiI GGNNCC 1 cut(s) 518
BmrFI CCNGG 2 cut(s) 699, 1341
BmsI GCATC 1 cut(s) 208
BpiI GAAGAC 4 cut(s) 198, 620, 872, 946
BpmI CTGGAG 2 cut(s) 1104, 1362
Bpu10I CCTNAGC 1 cut(s) 423
Bpu1102I GCTNAGC 1 cut(s) 1037
BpuEI CTTGAG 3 cut(s) 318, 363, 1418
BsaAI YACGTR 1 cut(s) 185
BsaBI GATNNNNATC 3 cut(s) 60, 475, 995
BsaI GGTCTC 2 cut(s) 209, 1436
BsaJI CCNNGG 3 cut(s) 118, 281, 1233
BsaXI ACNNNNNCTCC 2 cut(s) 330, 360
Bsc4I CCNNNNNNNGG 2 cut(s) 604, 878
Bse118I RCCGGY 3 cut(s) 107, 195, 1032
Bse1I ACTGG 3 cut(s) 175, 802, 906
Bse3DI GCAATG 2 cut(s) 529, 1094
Bse8I GATNNNNATC 3 cut(s) 60, 475, 995
BseBI CCWGG 2 cut(s) 699, 1341
BseDI CCNNGG 3 cut(s) 118, 281, 1233
BseGI GGATG 4 cut(s) 418, 1078, 1336, 1414
BseJI GATNNNNATC 3 cut(s) 60, 475, 995
BseLI CCNNNNNNNGG 2 cut(s) 604, 878
BseMI GCAATG 2 cut(s) 529, 1094
BseMII CTCAG 4 cut(s) 204, 414, 852, 1257
BseNI ACTGG 3 cut(s) 175, 802, 906
BseRI GAGGAG 1 cut(s) 771
BseSI GKGCMC 1 cut(s) 971
BseXI GCAGC 3 cut(s) 112, 196, 661
BshFI GGCC 2 cut(s) 372, 597
BsiHKAI GWGCWC 4 cut(s) 379, 429, 671, 971
BsiSI CCGG 3 cut(s) 108, 196, 1033
BslFI GGGAC 2 cut(s) 730, 1214
BslI CCNNNNNNNGG 2 cut(s) 604, 878
BsmAI GTCTC 3 cut(s) 209, 482, 1436
BsmFI GGGAC 2 cut(s) 730, 1214
BsmI GAATGC 1 cut(s) 84
BsnI GGCC 2 cut(s) 372, 597
Bso31I GGTCTC 2 cut(s) 209, 1436
Bsp1286I GDGCHC 4 cut(s) 379, 429, 671, 971
Bsp143I GATC 5 cut(s) 393, 516, 943, 1108, 1165
Bsp1720I GCTNAGC 1 cut(s) 1037
BspACI CCGC 3 cut(s) 149, 520, 894
BspANI GGCC 2 cut(s) 372, 597
BspCNI CTCAG 4 cut(s) 205, 415, 853, 1258
BspLI GGNNCC 1 cut(s) 518
BspPI GGATC 4 cut(s) 388, 511, 524, 1160
BspTNI GGTCTC 2 cut(s) 209, 1436
BsrDI GCAATG 2 cut(s) 529, 1094
BsrFI RCCGGY 3 cut(s) 107, 195, 1032
BsrI ACTGG 3 cut(s) 175, 802, 906
BssAI RCCGGY 3 cut(s) 107, 195, 1032
BssECI CCNNGG 3 cut(s) 118, 281, 1233
BssMI GATC 5 cut(s) 393, 516, 943, 1108, 1165
BssT1I CCWWGG 2 cut(s) 118, 1233
Bst2UI CCWGG 2 cut(s) 699, 1341
Bst4CI ACNGT 5 cut(s) 70, 225, 1021, 1120, 1280
Bst6I CTCTTC 2 cut(s) 1069, 1266
BstBAI YACGTR 1 cut(s) 185
BstC8I GCNNGC 2 cut(s) 616, 858
BstDEI CTNAG 7 cut(s) 213, 423, 726, 861, 1037, 1266, 1503
BstF5I GGATG 4 cut(s) 418, 1078, 1336, 1414
BstKTI GATC 5 cut(s) 396, 519, 946, 1111, 1168
BstMAI GTCTC 3 cut(s) 209, 482, 1436
BstMBI GATC 5 cut(s) 393, 516, 943, 1108, 1165
BstMWI GCNNNNNNNGC 2 cut(s) 646, 1096
BstNI CCWGG 2 cut(s) 699, 1341
BstNSI RCATGY 1 cut(s) 793
BstSCI CCNGG 2 cut(s) 697, 1339
BstSLI GKGCMC 1 cut(s) 971
BstV1I GCAGC 3 cut(s) 112, 196, 661
BstV2I GAAGAC 4 cut(s) 198, 620, 872, 946
BstX2I RGATCY 2 cut(s) 516, 1165
BstYI RGATCY 2 cut(s) 516, 1165
BsuI GTATCC 1 cut(s) 1123
BsuRI GGCC 2 cut(s) 372, 597
BtsCI GGATG 4 cut(s) 418, 1078, 1336, 1414
BtsI GCAGTG 1 cut(s) 774
BtsIMutI CAGTG 4 cut(s) 168, 306, 774, 1074
Cac8I GCNNGC 2 cut(s) 616, 858
Cfr10I RCCGGY 3 cut(s) 107, 195, 1032
Cfr13I GGNCC 1 cut(s) 596
Csp6I GTAC 2 cut(s) 553, 1259
CviAII CATG 7 cut(s) 113, 505, 790, 950, 1106, 1180, 1304
CviQI GTAC 2 cut(s) 553, 1259
DdeI CTNAG 7 cut(s) 213, 423, 726, 861, 1037, 1266, 1503
DpnI GATC 5 cut(s) 395, 518, 945, 1110, 1167
DpnII GATC 5 cut(s) 393, 516, 943, 1108, 1165
DriI GACNNNNNGTC 1 cut(s) 1183
EaeI YGGCCR 1 cut(s) 370
Eam1104I CTCTTC 2 cut(s) 1069, 1266
Eam1105I GACNNNNNGTC 1 cut(s) 1183
EarI CTCTTC 2 cut(s) 1069, 1266
Ecl136II GAGCTC 1 cut(s) 427
Eco130I CCWWGG 2 cut(s) 118, 1233
Eco24I GRGCYC 1 cut(s) 429
Eco31I GGTCTC 2 cut(s) 209, 1436
Eco53kI GAGCTC 1 cut(s) 427
Eco57I CTGAAG 3 cut(s) 614, 894, 1050
Eco72I CACGTG 1 cut(s) 185
EcoICRI GAGCTC 1 cut(s) 427
EcoRII CCWGG 2 cut(s) 697, 1339
EcoT14I CCWWGG 2 cut(s) 118, 1233
EcoT22I ATGCAT 1 cut(s) 245
EcoT38I GRGCYC 1 cut(s) 429
ErhI CCWWGG 2 cut(s) 118, 1233
FaeI CATG 7 cut(s) 116, 508, 793, 953, 1109, 1183, 1307
FaqI GGGAC 2 cut(s) 730, 1214
FatI CATG 7 cut(s) 112, 504, 789, 949, 1105, 1179, 1303
FauI CCCGC 1 cut(s) 142
FauNDI CATATG 1 cut(s) 259
FbaI TGATCA 1 cut(s) 1108
FblI GTMKAC 1 cut(s) 1059
Fnu4HI GCNGC 3 cut(s) 126, 210, 650
FokI GGATG 4 cut(s) 405, 1085, 1343, 1421
FriOI GRGCYC 1 cut(s) 429
Fsp4HI GCNGC 3 cut(s) 126, 210, 650
FspBI CTAG 4 cut(s) 621, 722, 1008, 1358
GluI GCNGC 3 cut(s) 126, 210, 650
GsuI CTGGAG 2 cut(s) 1104, 1362
HaeIII GGCC 2 cut(s) 372, 597
HapII CCGG 3 cut(s) 108, 196, 1033
Hin1II CATG 7 cut(s) 116, 508, 793, 953, 1109, 1183, 1307
HinfI GANTC 8 cut(s) 159, 251, 303, 771, 1061, 1079, 1247, 1464
HpaII CCGG 3 cut(s) 108, 196, 1033
HphI GGTGA 7 cut(s) 185, 552, 619, 893, 973, 1126, 1132
Hpy166II GTNNAC 3 cut(s) 899, 969, 1060
Hpy188I TCNGA 7 cut(s) 293, 633, 673, 940, 1165, 1189, 1252
Hpy188III TCNNGA 4 cut(s) 380, 391, 422, 1083
Hpy8I GTNNAC 3 cut(s) 899, 969, 1060
Hpy99I CGWCG 2 cut(s) 604, 1464
HpyAV CCTTC 6 cut(s) 550, 707, 742, 846, 1279, 1421
HpyCH4III ACNGT 5 cut(s) 70, 225, 1021, 1120, 1280
HpyCH4IV ACGT 2 cut(s) 184, 1257
HpyCH4V TGCA 8 cut(s) 243, 365, 464, 793, 969, 1105, 1307, 1499
HpyF10VI GCNNNNNNNGC 2 cut(s) 646, 1096
HpyF3I CTNAG 7 cut(s) 213, 423, 726, 861, 1037, 1266, 1503
HpySE526I ACGT 2 cut(s) 184, 1257
Hsp92II CATG 7 cut(s) 116, 508, 793, 953, 1109, 1183, 1307
Ksp22I TGATCA 1 cut(s) 1108
Kzo9I GATC 5 cut(s) 393, 516, 943, 1108, 1165
LmnI GCTCC 2 cut(s) 432, 784
Lsp1109I GCAGC 3 cut(s) 112, 196, 661
LweI GCATC 1 cut(s) 208
MaeI CTAG 4 cut(s) 621, 722, 1008, 1358
MaeII ACGT 2 cut(s) 184, 1257
MaeIII GTNAC 4 cut(s) 754, 979, 1114, 1175
MalI GATC 5 cut(s) 395, 518, 945, 1110, 1167
MboI GATC 5 cut(s) 393, 516, 943, 1108, 1165
MboII GAAGA 8 cut(s) 200, 203, 620, 877, 938, 946, 1056, 1283
MflI RGATCY 2 cut(s) 516, 1165
MhlI GDGCHC 4 cut(s) 379, 429, 671, 971
MluCI AATT 4 cut(s) 42, 351, 580, 796
MlyI GAGTC 3 cut(s) 168, 765, 1055
Mph1103I ATGCAT 1 cut(s) 245
MroXI GAANNNNTTC 1 cut(s) 302
MseI TTAA 4 cut(s) 350, 822, 906, 1218
MslI CAYNNNNRTG 3 cut(s) 204, 964, 1196
MspA1I CMGCKG 1 cut(s) 964
MspI CCGG 3 cut(s) 108, 196, 1033
MspR9I CCNGG 2 cut(s) 699, 1341
Mva1269I GAATGC 1 cut(s) 84
MvaI CCWGG 2 cut(s) 699, 1341
MwoI GCNNNNNNNGC 2 cut(s) 646, 1096
NdeI CATATG 1 cut(s) 259
NdeII GATC 5 cut(s) 393, 516, 943, 1108, 1165
NlaIII CATG 7 cut(s) 116, 508, 793, 953, 1109, 1183, 1307
NlaIV GGNNCC 1 cut(s) 518
NmeAIII GCCGAG 1 cut(s) 262
NmuCI GTSAC 3 cut(s) 979, 1114, 1175
NsiI ATGCAT 1 cut(s) 245
NspI RCATGY 1 cut(s) 793
OliI CACNNNNGTG 2 cut(s) 964, 1196
PctI GAATGC 1 cut(s) 84
PdmI GAANNNNTTC 1 cut(s) 302
PfeI GAWTC 5 cut(s) 251, 303, 1079, 1247, 1464
PkrI GCNGC 3 cut(s) 127, 211, 651
PleI GAGTC 3 cut(s) 167, 765, 1055
PmaCI CACGTG 1 cut(s) 185
PmlI CACGTG 1 cut(s) 185
PpsI GAGTC 3 cut(s) 167, 765, 1055
Ppu21I YACGTR 1 cut(s) 185
Psp124BI GAGCTC 1 cut(s) 429
Psp6I CCWGG 2 cut(s) 697, 1339
PspCI CACGTG 1 cut(s) 185
PspGI CCWGG 2 cut(s) 697, 1339
PspN4I GGNNCC 1 cut(s) 518
PspPI GGNCC 1 cut(s) 596
PsuI RGATCY 2 cut(s) 516, 1165
PvuII CAGCTG 1 cut(s) 964
RsaI GTAC 2 cut(s) 554, 1260
RsaNI GTAC 2 cut(s) 553, 1259
RseI CAYNNNNRTG 3 cut(s) 204, 964, 1196
SacI GAGCTC 1 cut(s) 429
SaqAI TTAA 4 cut(s) 350, 822, 906, 1218
SatI GCNGC 3 cut(s) 126, 210, 650
Sau3AI GATC 5 cut(s) 393, 516, 943, 1108, 1165
Sau96I GGNCC 1 cut(s) 596
SchI GAGTC 3 cut(s) 168, 765, 1055
ScrFI CCNGG 2 cut(s) 699, 1341
SduI GDGCHC 4 cut(s) 379, 429, 671, 971
SfaNI GCATC 1 cut(s) 208
SmiMI CAYNNNNRTG 3 cut(s) 204, 964, 1196
SmlI CTYRAG 3 cut(s) 333, 378, 1433
SmoI CTYRAG 3 cut(s) 333, 378, 1433
SpeI ACTAGT 1 cut(s) 1357
Sse9I AATT 4 cut(s) 42, 351, 580, 796
SsiI CCGC 3 cut(s) 149, 520, 894
SspI AATATT 2 cut(s) 436, 1216
SspMI CTAG 4 cut(s) 621, 722, 1008, 1358
SstI GAGCTC 1 cut(s) 429
StyD4I CCNGG 2 cut(s) 697, 1339
StyI CCWWGG 2 cut(s) 118, 1233
TaaI ACNGT 5 cut(s) 70, 225, 1021, 1120, 1280
TaiI ACGT 2 cut(s) 187, 1260
TaqI TCGA 2 cut(s) 88, 1462
TasI AATT 4 cut(s) 42, 351, 580, 796
TatI WGTACW 1 cut(s) 552
TfiI GAWTC 5 cut(s) 251, 303, 1079, 1247, 1464
Tru1I TTAA 4 cut(s) 350, 822, 906, 1218
Tru9I TTAA 4 cut(s) 350, 822, 906, 1218
TscAI CASTG 4 cut(s) 175, 313, 781, 1074
TseFI GTSAC 3 cut(s) 979, 1114, 1175
TseI GCWGC 3 cut(s) 125, 209, 649
Tsp45I GTSAC 3 cut(s) 979, 1114, 1175
TspDTI ATGAA 5 cut(s) 521, 756, 938, 1292, 1440
TspGWI ACGGA 2 cut(s) 194, 1003
TspRI CASTG 4 cut(s) 175, 313, 781, 1074
VneI GTGCAC 1 cut(s) 967
XapI RAATTY 1 cut(s) 580
XceI RCATGY 1 cut(s) 793
XmiI GTMKAC 1 cut(s) 1059
XmnI GAANNNNTTC 1 cut(s) 302
XspI CTAG 4 cut(s) 621, 722, 1008, 1358
Zsp2I ATGCAT 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.