RchiOBHm_Chr4g0399131

Cleavage and polyadenylation specificity factor subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0002312
Physical Location & Seq
Reverse (-)
16229131 .. 16236665
7535 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37126

Sequence Viewer

Length: 2076 bp
ATGGCTTCGATGGGGGGACAAAAGAGGCGTGAAGCATCATCGTCTTCAGCAGCAAAACAGGAGGATAAGCTGATTGTTACTCCGTTAGGAGGTGGTAGCGAAGTTGGTCGCTCTTGCGTGTACATGTCCTACAAAGGCAAAAATGTCTTGTTTGATTGCGGAATCAATCCCGCTTTCTCGGGCATGGCTGCTTTGCCCTACTTTGATGAGATTGATCCTTCCACAATTGATGTCCTTCTCATAACCCATTTTCACTTGGATCATGCTGCATCCCTACCTTACTTCCTTCAGAAGACCACTTTCAAGGGCCGAGTCTTTATGACTTATGCAACAAAGGCTATCTATAGGTTGCTTTTGGCAGATTATATGAAAGTGAGCAAAGTTTCAGTTGAAGATATGTTGTTCGATGAGAAGGACATAACTGCTTCTACGGATAAAATTGAGGTTATTGATTTCCACCAAACAGTAGAAGTTGAGGGCATTCGGTTTTGGTGCTACACTGCAGGTCATGTCCTTGGTGCTGCTATGTTTATGGTTGATATTGCTGGTGTTAGGGTCCTCTACACTGGAGATTATTCACGTGAAGAAGACCGACACCTCCATGCTGCTGAGATGCCACAGTTCTCCCCTGATATATGCATCATTGAGTCCACATTTGGTGTCCAGCACCATCAACCTCGAAACGTCCGAGAGAAGCGATTCACTGAAGCTATACACACAGCAATCTCTCGAGGGGGTCGTGTCTTAATTCCTGCATATGCACTTGGCCGTGCCCAAGAACTTCTCCTGATTCTTGATGAGTATTGGTCAAACCATCCCGAGCTCCATAATATTCCTATATATTATGCTTCCCCACTGGCAAAAAAGTGTTTGTCTGTTTATGAGACGTACACCCTTTCAATGAACGATAGGATCCGCAATGCCAAGTCAAATCCCTTCATCTTCAACCACATATCACCATTAAACAGCGTTGAGAATTTCAAAGATGTGGGCCCCTCAGTGGTGATGGCAAGCCCTGGTACTCTTCAAAGCGGGCTGTCAAGGCAGCTATTTGATAAGTGGTGCTCTGATAAGAGAAATGCGTGTGTGATTCCGGGTTATGTGATTGAGGGGACACTTGCTAAGACAATCATGAATGAACCGAAAGAGGTTACCCTTATGAATGGGCTTGCTGCTCCTCTCAACATGTCAATCCATTACATTTCATTTGCTGCTCATGCAGATTCTGTTCAGACATGTGCATTTTTGGAGGAGCTGAGGCCTCCTAACATAATCCTTGTTCATGGAGAAGCTCATGAGATGGGAAGGCTGAAAGAGAAGCTCATGACTCAATTTTGTGATCGCAACACAAAAATCCTCACACCAAAGAATTGTCAGTCTGTTGAAATGTATTTTAACTCGCAGAAAATGGCTAAAGCTATTGGAAGGCTTGCTGAGAGAACCCCGGAAGTTGGTGAAACAGTCAGCGGTTTACTGGTTAAAAAAGGTTTCAGTTATCAGATAATGGCCTCTGAAGATCTTCATGTGTTCTCACAGCTGTCCACGGCAAATGTCACTCAACGTATTACTATCCCGTATACTACTGGCTTCATGGTGATAAGACATCGGCTGAGGCAAATGTATGAGAGCGTAGAATCTTCTGTGGATGAGGAATCTGGAGTGCCGACGTTGCGAGTGCATGATCGAGTGACTGTGAGGCAGGATACAGATAAACATGTTTCACTGCATTGGATGTCAGATCCTATAAGTGACATGGTGTCAGACTCCATTGTGGCTCTAATTTTGAATATCAACAGAGAAATCCCCAAGGTAGTCATTGAATCGGAAGATATAACAGAGGAAGAGAATGGGAGGAAGACGGAAAAGGTCATTCGTGCACTTCTTGTATCACTCTTTGGGGATGTGAAGCCTGGAGAAAATGGGAAGTTGGTGATCAGTGTTGATGGAAATGTGGCGCAGCTTGATAAACAGAGTGGGGACGTTGAAAGTGAAAATGAAGGCCTCAAGGAAAGAGTAGAGACAGCATTTCGTCGAATCCAAAGTGCGGTGAAACCAATTCCTCTTTCTTCATCTTAG

Protein Analysis

691

Amino Acids

77.31

Weight (kDa)

6.09

Isoelectric Point (pI)

46.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lactamase_B PF00753 36 - 198 1.7e-19 Metallo-beta-lactamase superfamily
Anti-Pycsar_Apyc1 PF23023 42 - 198 1.9e-08 Anti-Pycsar protein Apyc1
Lactamase_B_6 PF16661 44 - 205 4.1e-18 Metallo-beta-lactamase superfamily domain
Lactamase_B_2 PF12706 48 - 198 1.4e-07 Beta-lactamase superfamily domain
Beta-Casp PF10996 258 - 377 5.2e-30 Beta-Casp domain
RMMBL PF07521 393 - 444 3.1e-10 Zn-dependent metallo-hydrolase RNA specificity domain
CPSF73-100_C PF11718 487 - 685 3.5e-52 Pre-mRNA 3'-end-processing endonuclease polyadenylation factor C-term
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 494
AccI GTMKAC 1 cut(s) 1577
AciI CCGC 6 cut(s) 159, 171, 916, 1032, 1467, 2045
AclWI GGATC 5 cut(s) 209, 267, 907, 920, 1733
AcoI YGGCCR 1 cut(s) 766
AcsI RAATTY 1 cut(s) 976
AcuI CTGAAG 4 cut(s) 30, 272, 726, 1533
AcvI CACGTG 1 cut(s) 581
AfaI GTAC 3 cut(s) 122, 890, 1021
AfiI CCNNNNNNNGG 4 cut(s) 89, 1000, 1451, 2044
AflIII ACRYGT 4 cut(s) 123, 1185, 1235, 1714
AhdI GACNNNNNGTC 1 cut(s) 1756
AjnI CCWGG 2 cut(s) 1015, 1909
AjuI GAANNNNNNNTTGG 1 cut(s) 2047
Alw21I GWGCWC 3 cut(s) 825, 1067, 1879
Alw26I GTCTC 2 cut(s) 878, 2012
Alw44I GTGCAC 1 cut(s) 1875
AlwI GGATC 5 cut(s) 209, 267, 907, 920, 1733
AlwNI CAGNNNCTG 1 cut(s) 1226
Ama87I CYCGRG 3 cut(s) 178, 729, 818
AoxI GGCC 6 cut(s) 307, 766, 991, 1259, 1506, 1999
ApaI GGGCCC 1 cut(s) 995
ApaLI GTGCAC 1 cut(s) 1875
ApeKI GCWGC 9 cut(s) 50, 188, 266, 521, 605, 1045, 1172, 1211, 1957
ApoI RAATTY 1 cut(s) 976
Asp700I GAANNNNTTC 2 cut(s) 698, 1518
AspLEI GCGC 1 cut(s) 1957
AspS9I GGNCC 4 cut(s) 307, 556, 991, 992
AsuC2I CCSGG 2 cut(s) 1095, 1445
AsuHPI GGTGA 6 cut(s) 948, 1015, 1466, 1606, 1942, 2059
AvaI CYCGRG 3 cut(s) 178, 729, 818
AvaII GGWCC 1 cut(s) 556
BaeGI GKGCMC 3 cut(s) 775, 995, 1879
BamHI GGATCC 1 cut(s) 912
BanII GRGCYC 2 cut(s) 825, 995
BbrPI CACGTG 1 cut(s) 581
BbsI GAAGAC 4 cut(s) 36, 299, 594, 1862
Bbv12I GWGCWC 3 cut(s) 825, 1067, 1879
BbvCI CCTCAGC 2 cut(s) 1256, 1610
BbvI GCAGC 9 cut(s) 62, 175, 253, 508, 592, 1057, 1159, 1198, 1969
BccI CCATC 6 cut(s) 4, 678, 822, 1000, 1294, 1937
BceAI ACGGC 2 cut(s) 753, 1560
BciT130I CCWGG 2 cut(s) 1017, 1911
BciVI GTATCC 1 cut(s) 1696
BclI TGATCA 1 cut(s) 1932
BcnI CCSGG 2 cut(s) 1095, 1445
BcoDI GTCTC 2 cut(s) 878, 2012
BfmI CTRYAG 2 cut(s) 343, 501
BfuAI ACCTGC 1 cut(s) 494
BfuI GTATCC 1 cut(s) 1696
BglII AGATCT 1 cut(s) 1516
BisI GCNGC 9 cut(s) 51, 189, 267, 522, 606, 1046, 1173, 1212, 1958
BlsI GCNGC 9 cut(s) 52, 190, 268, 523, 607, 1047, 1174, 1213, 1959
Bme1390I CCNGG 4 cut(s) 1017, 1095, 1445, 1911
Bme18I GGWCC 1 cut(s) 556
BmeRI GACNNNNNGTC 1 cut(s) 1756
BmeT110I CYCGRG 3 cut(s) 178, 729, 818
BmgT120I GGNCC 4 cut(s) 307, 556, 991, 992
BmiI GGNNCC 4 cut(s) 557, 914, 993, 994
BmrFI CCNGG 4 cut(s) 1017, 1095, 1445, 1911
BmsI GCATC 4 cut(s) 44, 278, 603, 648
BpiI GAAGAC 4 cut(s) 36, 299, 594, 1862
BpmI CTGGAG 3 cut(s) 588, 1677, 1932
Bpu10I CCTNAGC 2 cut(s) 1256, 1610
BpuEI CTTGAG 1 cut(s) 1988
BpuMI CCSGG 2 cut(s) 1095, 1445
BsaAI YACGTR 1 cut(s) 581
BsaJI CCNNGG 5 cut(s) 514, 1015, 1443, 1542, 1806
Bsc4I CCNNNNNNNGG 4 cut(s) 89, 1000, 1451, 2044
Bse1I ACTGG 4 cut(s) 571, 861, 1479, 1588
Bse3DI GCAATG 1 cut(s) 925
BseBI CCWGG 2 cut(s) 1017, 1911
BseDI CCNNGG 5 cut(s) 514, 1015, 1443, 1542, 1806
BseGI GGATG 5 cut(s) 269, 814, 1651, 1737, 1906
BseLI CCNNNNNNNGG 4 cut(s) 89, 1000, 1451, 2044
BseMI GCAATG 1 cut(s) 925
BseMII CTCAG 5 cut(s) 600, 1011, 1247, 1425, 1601
BseNI ACTGG 4 cut(s) 571, 861, 1479, 1588
BseRI GAGGAG 2 cut(s) 1167, 1265
BseSI GKGCMC 3 cut(s) 775, 995, 1879
BseXI GCAGC 9 cut(s) 62, 175, 253, 508, 592, 1057, 1159, 1198, 1969
BshFI GGCC 6 cut(s) 309, 768, 993, 1261, 1508, 2001
BsiHKAI GWGCWC 3 cut(s) 825, 1067, 1879
BsiHKCI CYCGRG 3 cut(s) 178, 729, 818
BsiSI CCGG 2 cut(s) 1094, 1445
BslFI GGGAC 3 cut(s) 30, 1126, 1991
BslI CCNNNNNNNGG 4 cut(s) 89, 1000, 1451, 2044
BsmAI GTCTC 2 cut(s) 878, 2012
BsmBI CGTCTC 1 cut(s) 878
BsmFI GGGAC 3 cut(s) 30, 1126, 1991
BsmI GAATGC 1 cut(s) 480
BsnI GGCC 6 cut(s) 309, 768, 993, 1261, 1508, 2001
BsoBI CYCGRG 3 cut(s) 178, 729, 818
Bsp120I GGGCCC 1 cut(s) 991
Bsp1286I GDGCHC 5 cut(s) 775, 825, 995, 1067, 1879
Bsp1407I TGTACA 1 cut(s) 120
Bsp143I GATC 8 cut(s) 214, 259, 912, 1339, 1516, 1681, 1738, 1932
BspACI CCGC 6 cut(s) 159, 171, 916, 1032, 1467, 2045
BspANI GGCC 6 cut(s) 309, 768, 993, 1261, 1508, 2001
BspCNI CTCAG 5 cut(s) 601, 1010, 1248, 1426, 1602
BspHI TCATGA 3 cut(s) 1131, 1294, 1323
BspLI GGNNCC 4 cut(s) 557, 914, 993, 994
BspMAI CTGCAG 1 cut(s) 505
BspMI ACCTGC 1 cut(s) 494
BspPI GGATC 5 cut(s) 209, 267, 907, 920, 1733
BsrDI GCAATG 1 cut(s) 925
BsrGI TGTACA 1 cut(s) 120
BsrI ACTGG 4 cut(s) 571, 861, 1479, 1588
BssECI CCNNGG 5 cut(s) 514, 1015, 1443, 1542, 1806
BssMI GATC 8 cut(s) 214, 259, 912, 1339, 1516, 1681, 1738, 1932
BssNAI GTATAC 1 cut(s) 1578
BssT1I CCWWGG 2 cut(s) 514, 1806
Bst1107I GTATAC 1 cut(s) 1578
Bst2UI CCWGG 2 cut(s) 1017, 1911
Bst4CI ACNGT 4 cut(s) 466, 621, 1462, 1693
Bst6I CTCTTC 2 cut(s) 1029, 1836
BstAUI TGTACA 1 cut(s) 120
BstBAI YACGTR 1 cut(s) 581
BstC8I GCNNGC 4 cut(s) 1012, 1034, 1170, 1431
BstDEI CTNAG 7 cut(s) 609, 997, 1122, 1256, 1434, 1610, 2073
BstDSI CCRYGG 1 cut(s) 1542
BstEII GGTNACC 1 cut(s) 1150
BstF5I GGATG 5 cut(s) 269, 814, 1651, 1737, 1906
BstHHI GCGC 1 cut(s) 1957
BstKTI GATC 8 cut(s) 217, 262, 915, 1342, 1519, 1684, 1741, 1935
BstMAI GTCTC 2 cut(s) 878, 2012
BstMBI GATC 8 cut(s) 214, 259, 912, 1339, 1516, 1681, 1738, 1932
BstMWI GCNNNNNNNGC 4 cut(s) 335, 1042, 1217, 1669
BstNI CCWGG 2 cut(s) 1017, 1911
BstNSI RCATGY 4 cut(s) 127, 1189, 1239, 1718
BstPI GGTNACC 1 cut(s) 1150
BstSCI CCNGG 4 cut(s) 1015, 1093, 1443, 1909
BstSFI CTRYAG 2 cut(s) 343, 501
BstSLI GKGCMC 3 cut(s) 775, 995, 1879
BstV1I GCAGC 9 cut(s) 62, 175, 253, 508, 592, 1057, 1159, 1198, 1969
BstV2I GAAGAC 4 cut(s) 36, 299, 594, 1862
BstX2I RGATCY 3 cut(s) 912, 1516, 1738
BstYI RGATCY 3 cut(s) 912, 1516, 1738
BstZ17I GTATAC 1 cut(s) 1578
BsuI GTATCC 1 cut(s) 1696
BsuRI GGCC 6 cut(s) 309, 768, 993, 1261, 1508, 2001
BtgI CCRYGG 1 cut(s) 1542
BtsCI GGATG 5 cut(s) 269, 814, 1651, 1737, 1906
BtsI GCAGTG 2 cut(s) 498, 1721
BtsIMutI CAGTG 7 cut(s) 498, 564, 702, 854, 1005, 1721, 1942
BveI ACCTGC 1 cut(s) 494
Cac8I GCNNGC 4 cut(s) 1012, 1034, 1170, 1431
CaiI CAGNNNCTG 1 cut(s) 1226
CciI TCATGA 3 cut(s) 1131, 1294, 1323
CfoI GCGC 1 cut(s) 1957
Cfr13I GGNCC 4 cut(s) 307, 556, 991, 992
Csp6I GTAC 3 cut(s) 121, 889, 1020
CviQI GTAC 3 cut(s) 121, 889, 1020
DdeI CTNAG 7 cut(s) 609, 997, 1122, 1256, 1434, 1610, 2073
DpnI GATC 8 cut(s) 216, 261, 914, 1341, 1518, 1683, 1740, 1934
DpnII GATC 8 cut(s) 214, 259, 912, 1339, 1516, 1681, 1738, 1932
DriI GACNNNNNGTC 1 cut(s) 1756
EaeI YGGCCR 1 cut(s) 766
Eam1104I CTCTTC 2 cut(s) 1029, 1836
Eam1105I GACNNNNNGTC 1 cut(s) 1756
EarI CTCTTC 2 cut(s) 1029, 1836
Ecl136II GAGCTC 1 cut(s) 823
Eco130I CCWWGG 2 cut(s) 514, 1806
Eco147I AGGCCT 2 cut(s) 1261, 2001
Eco24I GRGCYC 2 cut(s) 825, 995
Eco47I GGWCC 1 cut(s) 556
Eco53kI GAGCTC 1 cut(s) 823
Eco57I CTGAAG 4 cut(s) 30, 272, 726, 1533
Eco72I CACGTG 1 cut(s) 581
Eco88I CYCGRG 3 cut(s) 178, 729, 818
Eco91I GGTNACC 1 cut(s) 1150
EcoICRI GAGCTC 1 cut(s) 823
EcoO109I RGGNCCY 2 cut(s) 556, 992
EcoO65I GGTNACC 1 cut(s) 1150
EcoRII CCWGG 2 cut(s) 1015, 1909
EcoT14I CCWWGG 2 cut(s) 514, 1806
EcoT22I ATGCAT 1 cut(s) 641
EcoT38I GRGCYC 2 cut(s) 825, 995
ErhI CCWWGG 2 cut(s) 514, 1806
Esp3I CGTCTC 1 cut(s) 878
FaqI GGGAC 3 cut(s) 30, 1126, 1991
FauI CCCGC 2 cut(s) 178, 1025
FauNDI CATATG 1 cut(s) 757
FbaI TGATCA 1 cut(s) 1932
FblI GTMKAC 1 cut(s) 1577
Fnu4HI GCNGC 9 cut(s) 51, 189, 267, 522, 606, 1046, 1173, 1212, 1958
FokI GGATG 5 cut(s) 256, 801, 1658, 1744, 1913
FriOI GRGCYC 2 cut(s) 825, 995
Fsp4HI GCNGC 9 cut(s) 51, 189, 267, 522, 606, 1046, 1173, 1212, 1958
GlaI GCGC 1 cut(s) 1956
GluI GCNGC 9 cut(s) 51, 189, 267, 522, 606, 1046, 1173, 1212, 1958
GsuI CTGGAG 3 cut(s) 588, 1677, 1932
HaeIII GGCC 6 cut(s) 309, 768, 993, 1261, 1508, 2001
HapII CCGG 2 cut(s) 1094, 1445
HhaI GCGC 1 cut(s) 1957
Hin6I GCGC 1 cut(s) 1955
HinP1I GCGC 1 cut(s) 1955
HpaII CCGG 2 cut(s) 1094, 1445
HphI GGTGA 6 cut(s) 948, 1015, 1466, 1606, 1942, 2059
Hpy166II GTNNAC 7 cut(s) 121, 651, 891, 1472, 1542, 1578, 1877
Hpy188I TCNGA 9 cut(s) 291, 689, 1069, 1233, 1500, 1513, 1738, 1762, 1825
Hpy188III TCNNGA 8 cut(s) 729, 787, 794, 818, 1132, 1295, 1324, 1656
Hpy8I GTNNAC 7 cut(s) 121, 651, 891, 1472, 1542, 1578, 1877
Hpy99I CGWCG 2 cut(s) 1669, 2034
HpyAV CCTTC 8 cut(s) 228, 245, 296, 406, 946, 1299, 1419, 1991
HpyCH4III ACNGT 4 cut(s) 466, 621, 1462, 1693
HpyCH4IV ACGT 6 cut(s) 580, 684, 887, 1561, 1667, 1980
HpyF10VI GCNNNNNNNGC 4 cut(s) 335, 1042, 1217, 1669
HpyF3I CTNAG 7 cut(s) 609, 997, 1122, 1256, 1434, 1610, 2073
HpySE526I ACGT 6 cut(s) 580, 684, 887, 1561, 1667, 1980
HspAI GCGC 1 cut(s) 1955
Ksp22I TGATCA 1 cut(s) 1932
Kzo9I GATC 8 cut(s) 214, 259, 912, 1339, 1516, 1681, 1738, 1932
LmnI GCTCC 3 cut(s) 828, 1180, 1252
Lsp1109I GCAGC 9 cut(s) 62, 175, 253, 508, 592, 1057, 1159, 1198, 1969
LweI GCATC 4 cut(s) 44, 278, 603, 648
MaeII ACGT 6 cut(s) 580, 684, 887, 1561, 1667, 1980
MaeIII GTNAC 5 cut(s) 76, 1150, 1552, 1687, 1748
MalI GATC 8 cut(s) 216, 261, 914, 1341, 1518, 1683, 1740, 1934
MboI GATC 8 cut(s) 214, 259, 912, 1339, 1516, 1681, 1738, 1932
MfeI CAATTG 1 cut(s) 225
MflI RGATCY 3 cut(s) 912, 1516, 1738
MhlI GDGCHC 5 cut(s) 775, 825, 995, 1067, 1879
MluCI AATT 8 cut(s) 225, 438, 747, 976, 1331, 1369, 1779, 2055
MlyI GAGTC 4 cut(s) 321, 656, 1321, 1757
Mph1103I ATGCAT 1 cut(s) 641
MroXI GAANNNNTTC 2 cut(s) 698, 1518
MseI TTAA 4 cut(s) 746, 962, 1395, 1479
MslI CAYNNNNRTG 1 cut(s) 600
MspA1I CMGCKG 2 cut(s) 1467, 1537
MspI CCGG 2 cut(s) 1094, 1445
MspR9I CCNGG 4 cut(s) 1017, 1095, 1445, 1911
MunI CAATTG 1 cut(s) 225
Mva1269I GAATGC 1 cut(s) 480
MvaI CCWGG 2 cut(s) 1017, 1911
MwoI GCNNNNNNNGC 4 cut(s) 335, 1042, 1217, 1669
NciI CCSGG 2 cut(s) 1095, 1445
NdeI CATATG 1 cut(s) 757
NdeII GATC 8 cut(s) 214, 259, 912, 1339, 1516, 1681, 1738, 1932
NlaIV GGNNCC 4 cut(s) 557, 914, 993, 994
NmeAIII GCCGAG 1 cut(s) 335
NmuCI GTSAC 3 cut(s) 1552, 1687, 1748
NsiI ATGCAT 1 cut(s) 641
NspI RCATGY 4 cut(s) 127, 1189, 1239, 1718
PaeR7I CTCGAG 1 cut(s) 729
PagI TCATGA 3 cut(s) 1131, 1294, 1323
PceI AGGCCT 2 cut(s) 1261, 2001
PciI ACATGT 4 cut(s) 123, 1185, 1235, 1714
PcsI WCGNNNNNNNCGW 2 cut(s) 685, 736
PctI GAATGC 1 cut(s) 480
PdmI GAANNNNTTC 2 cut(s) 698, 1518
PfeI GAWTC 9 cut(s) 162, 699, 790, 1090, 1223, 1634, 1652, 1820, 2034
PkrI GCNGC 9 cut(s) 52, 190, 268, 523, 607, 1047, 1174, 1213, 1959
PleI GAGTC 4 cut(s) 320, 655, 1321, 1757
PmaCI CACGTG 1 cut(s) 581
PmlI CACGTG 1 cut(s) 581
PpsI GAGTC 4 cut(s) 320, 655, 1321, 1757
Ppu21I YACGTR 1 cut(s) 581
PpuMI RGGWCCY 1 cut(s) 556
PscI ACATGT 4 cut(s) 123, 1185, 1235, 1714
Psp124BI GAGCTC 1 cut(s) 825
Psp5II RGGWCCY 1 cut(s) 556
Psp6I CCWGG 2 cut(s) 1015, 1909
PspCI CACGTG 1 cut(s) 581
PspEI GGTNACC 1 cut(s) 1150
PspGI CCWGG 2 cut(s) 1015, 1909
PspN4I GGNNCC 4 cut(s) 557, 914, 993, 994
PspOMI GGGCCC 1 cut(s) 991
PspPI GGNCC 4 cut(s) 307, 556, 991, 992
PspPPI RGGWCCY 1 cut(s) 556
PstI CTGCAG 1 cut(s) 505
PstNI CAGNNNCTG 1 cut(s) 1226
PsuI RGATCY 3 cut(s) 912, 1516, 1738
PvuII CAGCTG 1 cut(s) 1537
RsaI GTAC 3 cut(s) 122, 890, 1021
RsaNI GTAC 3 cut(s) 121, 889, 1020
RseI CAYNNNNRTG 1 cut(s) 600
SacI GAGCTC 1 cut(s) 825
SaqAI TTAA 4 cut(s) 746, 962, 1395, 1479
SatI GCNGC 9 cut(s) 51, 189, 267, 522, 606, 1046, 1173, 1212, 1958
Sau3AI GATC 8 cut(s) 214, 259, 912, 1339, 1516, 1681, 1738, 1932
Sau96I GGNCC 4 cut(s) 307, 556, 991, 992
SchI GAGTC 4 cut(s) 321, 656, 1321, 1757
ScrFI CCNGG 4 cut(s) 1017, 1095, 1445, 1911
SduI GDGCHC 5 cut(s) 775, 825, 995, 1067, 1879
SfaNI GCATC 4 cut(s) 44, 278, 603, 648
SfcI CTRYAG 2 cut(s) 343, 501
Sfr274I CTCGAG 1 cut(s) 729
SinI GGWCC 1 cut(s) 556
SlaI CTCGAG 1 cut(s) 729
SmiMI CAYNNNNRTG 1 cut(s) 600
SmlI CTYRAG 2 cut(s) 729, 2003
SmoI CTYRAG 2 cut(s) 729, 2003
Sse9I AATT 8 cut(s) 225, 438, 747, 976, 1331, 1369, 1779, 2055
SseBI AGGCCT 2 cut(s) 1261, 2001
SsiI CCGC 6 cut(s) 159, 171, 916, 1032, 1467, 2045
SspI AATATT 1 cut(s) 832
SstI GAGCTC 1 cut(s) 825
StuI AGGCCT 2 cut(s) 1261, 2001
StyD4I CCNGG 4 cut(s) 1015, 1093, 1443, 1909
StyI CCWWGG 2 cut(s) 514, 1806
TaaI ACNGT 4 cut(s) 466, 621, 1462, 1693
TaiI ACGT 6 cut(s) 583, 687, 890, 1564, 1670, 1983
TaqI TCGA 6 cut(s) 8, 405, 679, 730, 1684, 2032
TaqII GACCGA 1 cut(s) 606
TasI AATT 8 cut(s) 225, 438, 747, 976, 1331, 1369, 1779, 2055
TatI WGTACW 1 cut(s) 120
TfiI GAWTC 9 cut(s) 162, 699, 790, 1090, 1223, 1634, 1652, 1820, 2034
Tru1I TTAA 4 cut(s) 746, 962, 1395, 1479
Tru9I TTAA 4 cut(s) 746, 962, 1395, 1479
TscAI CASTG 7 cut(s) 505, 571, 709, 861, 1005, 1728, 1942
TseFI GTSAC 3 cut(s) 1552, 1687, 1748
TseI GCWGC 9 cut(s) 50, 188, 266, 521, 605, 1045, 1172, 1211, 1957
Tsp45I GTSAC 3 cut(s) 1552, 1687, 1748
TspGWI ACGGA 3 cut(s) 72, 446, 1874
TspRI CASTG 7 cut(s) 505, 571, 709, 861, 1005, 1728, 1942
VneI GTGCAC 1 cut(s) 1875
VpaK11BI GGWCC 1 cut(s) 556
XapI RAATTY 1 cut(s) 976
XceI RCATGY 4 cut(s) 127, 1189, 1239, 1718
XhoI CTCGAG 1 cut(s) 729
XmiI GTMKAC 1 cut(s) 1577
XmnI GAANNNNTTC 2 cut(s) 698, 1518
Zsp2I ATGCAT 1 cut(s) 641
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.