Cleavage and polyadenylation specificity factor subunit
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G61010 AT1G61010 AT1G61010 AT1G61010 AT1G61010 |
| fragaria_vesca | FvH4_4g07000 FvH4_4g07000 FvH4_5g28761 FvH4_5g28770 FvH4_7g26770 |
| malus_domestica | MD08G1237400.v1.1 MD15G1429300.v1.1 |
| prunus_persica | Prupe.1G574800_v2.0.a1 Prupe.1G574800_v2.0.a1 Prupe.1G574900_v2.0.a1 Prupe.I006100_v2.0.a1 Prupe.I006100_v2.0.a1 Prupe.I006200_v2.0.a1 |
| pyrus_communis | pycom08g20590 pycom08g20600 pycom15g37980 pycom15g37990 |
| rosa_chinensis | RchiOBHm_Chr1g0363271 RchiOBHm_Chr4g0399131 RchiOBHm_Chr7g0220981 |
| rosa_laevigata | RLG00000002186 RLG00000009298 |
| rosa_multiflora | Rmu_sc0002002.1_g000015 Rmu_sc0002105.1_g000022 |
| rosa_roxburghii | Rroxscaffold_3G00238830 Rroxscaffold_5G00344090 |
| rosa_rugosa | Rorug04G0014100 Rorug07G0199100 |
| rosa_samantha | Rh1DG309200 Rh4BG089900 Rh4DG084500 Rh7AG339000 Rh7BG329800 Rh7CG357100 Rh7DG337800 |
| rosa_wichuraiana | Rw4G007590 Rw7G028840 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 503, 1486 |
| AccI | GTMKAC | 1 cut(s) | 1197 |
| AciI | CCGC | 4 cut(s) | 107, 691, 1040, 1125 |
| AclWI | GGATC | 2 cut(s) | 742, 1254 |
| AcsI | RAATTY | 5 cut(s) | 50, 580, 631, 756, 1301 |
| AfaI | GTAC | 5 cut(s) | 126, 152, 660, 1172, 1233 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 209, 302, 316 |
| AgsI | TTSAA | 6 cut(s) | 377, 434, 580, 629, 640, 866 |
| AjnI | CCWGG | 2 cut(s) | 205, 483 |
| AluBI | AGCT | 3 cut(s) | 112, 362, 471 |
| AluI | AGCT | 3 cut(s) | 112, 362, 471 |
| Alw21I | GWGCWC | 3 cut(s) | 106, 543, 1051 |
| Alw26I | GTCTC | 4 cut(s) | 26, 84, 345, 456 |
| Alw44I | GTGCAC | 1 cut(s) | 1047 |
| AlwI | GGATC | 2 cut(s) | 742, 1254 |
| Ama87I | CYCGRG | 2 cut(s) | 647, 1210 |
| AoxI | GGCC | 1 cut(s) | 853 |
| ApaLI | GTGCAC | 1 cut(s) | 1047 |
| ApeKI | GCWGC | 2 cut(s) | 109, 422 |
| ApoI | RAATTY | 5 cut(s) | 50, 580, 631, 756, 1301 |
| AspA2I | CCTAGG | 1 cut(s) | 140 |
| AspLEI | GCGC | 1 cut(s) | 398 |
| AspS9I | GGNCC | 1 cut(s) | 144 |
| AsuC2I | CCSGG | 1 cut(s) | 118 |
| AsuHPI | GGTGA | 6 cut(s) | 560, 797, 998, 1070, 1091, 1148 |
| AsuII | TTCGAA | 1 cut(s) | 1305 |
| AvaI | CYCGRG | 2 cut(s) | 647, 1210 |
| AvaII | GGWCC | 1 cut(s) | 144 |
| AvrII | CCTAGG | 1 cut(s) | 140 |
| BaeGI | GKGCMC | 1 cut(s) | 1051 |
| BanII | GRGCYC | 1 cut(s) | 310 |
| BbsI | GAAGAC | 1 cut(s) | 1399 |
| Bbv12I | GWGCWC | 3 cut(s) | 106, 543, 1051 |
| BbvI | GCAGC | 2 cut(s) | 121, 409 |
| BccI | CCATC | 4 cut(s) | 331, 759, 1070, 1310 |
| BceAI | ACGGC | 2 cut(s) | 521, 947 |
| BciT130I | CCWGG | 2 cut(s) | 207, 485 |
| BclI | TGATCA | 1 cut(s) | 352 |
| BcnI | CCSGG | 1 cut(s) | 118 |
| BcoDI | GTCTC | 4 cut(s) | 26, 84, 345, 456 |
| BfaI | CTAG | 6 cut(s) | 81, 141, 165, 344, 393, 1148 |
| BfmI | CTRYAG | 1 cut(s) | 423 |
| BglII | AGATCT | 1 cut(s) | 1144 |
| BisI | GCNGC | 2 cut(s) | 110, 423 |
| BlnI | CCTAGG | 1 cut(s) | 140 |
| BlsI | GCNGC | 2 cut(s) | 111, 424 |
| BmcAI | AGTACT | 1 cut(s) | 152 |
| Bme1390I | CCNGG | 3 cut(s) | 118, 207, 485 |
| Bme18I | GGWCC | 1 cut(s) | 144 |
| BmeT110I | CYCGRG | 2 cut(s) | 647, 1210 |
| BmgT120I | GGNCC | 1 cut(s) | 144 |
| BmiI | GGNNCC | 3 cut(s) | 200, 307, 321 |
| BmrFI | CCNGG | 3 cut(s) | 118, 207, 485 |
| BmsI | GCATC | 2 cut(s) | 497, 880 |
| BpiI | GAAGAC | 1 cut(s) | 1399 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 187, 219 |
| BpmI | CTGGAG | 2 cut(s) | 189, 324 |
| Bpu14I | TTCGAA | 1 cut(s) | 1305 |
| BpuMI | CCSGG | 1 cut(s) | 118 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1143 |
| BsaJI | CCNNGG | 5 cut(s) | 97, 116, 140, 544, 1270 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 579, 609 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 209, 302, 316 |
| Bse1I | ACTGG | 1 cut(s) | 1052 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1143 |
| BseBI | CCWGG | 2 cut(s) | 207, 485 |
| BseDI | CCNNGG | 5 cut(s) | 97, 116, 140, 544, 1270 |
| BseGI | GGATG | 5 cut(s) | 93, 819, 979, 1081, 1360 |
| BseJI | GATNNNNATC | 1 cut(s) | 1143 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 209, 302, 316 |
| BseMII | CTCAG | 2 cut(s) | 267, 1305 |
| BseNI | ACTGG | 1 cut(s) | 1052 |
| BseSI | GKGCMC | 1 cut(s) | 1051 |
| BseXI | GCAGC | 2 cut(s) | 121, 409 |
| BseYI | CCCAGC | 1 cut(s) | 309 |
| Bsh1285I | CGRYCG | 1 cut(s) | 37 |
| BshFI | GGCC | 1 cut(s) | 855 |
| BsiEI | CGRYCG | 1 cut(s) | 37 |
| BsiHKAI | GWGCWC | 3 cut(s) | 106, 543, 1051 |
| BsiHKCI | CYCGRG | 2 cut(s) | 647, 1210 |
| BsiSI | CCGG | 1 cut(s) | 118 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 209, 302, 316 |
| BsmAI | GTCTC | 4 cut(s) | 26, 84, 345, 456 |
| BsmBI | CGTCTC | 1 cut(s) | 26 |
| BsmI | GAATGC | 2 cut(s) | 834, 1353 |
| BsnI | GGCC | 1 cut(s) | 855 |
| BsoBI | CYCGRG | 2 cut(s) | 647, 1210 |
| Bsp119I | TTCGAA | 1 cut(s) | 1305 |
| Bsp1286I | GDGCHC | 4 cut(s) | 106, 310, 543, 1051 |
| Bsp19I | CCATGG | 1 cut(s) | 544 |
| BspACI | CCGC | 4 cut(s) | 107, 691, 1040, 1125 |
| BspANI | GGCC | 1 cut(s) | 855 |
| BspCNI | CTCAG | 2 cut(s) | 268, 1304 |
| BspHI | TCATGA | 1 cut(s) | 355 |
| BspLI | GGNNCC | 3 cut(s) | 200, 307, 321 |
| BspMAI | CTGCAG | 1 cut(s) | 427 |
| BspPI | GGATC | 2 cut(s) | 742, 1254 |
| BspT104I | TTCGAA | 1 cut(s) | 1305 |
| BsrI | ACTGG | 1 cut(s) | 1052 |
| BssECI | CCNNGG | 5 cut(s) | 97, 116, 140, 544, 1270 |
| BssNAI | GTATAC | 1 cut(s) | 1198 |
| BssT1I | CCWWGG | 3 cut(s) | 140, 544, 1270 |
| Bst1107I | GTATAC | 1 cut(s) | 1198 |
| Bst2UI | CCWGG | 2 cut(s) | 207, 485 |
| Bst4CI | ACNGT | 5 cut(s) | 513, 557, 623, 883, 1046 |
| Bst6I | CTCTTC | 1 cut(s) | 82 |
| BstBI | TTCGAA | 1 cut(s) | 1305 |
| BstDEI | CTNAG | 5 cut(s) | 276, 1291, 1312, 1400, 1414 |
| BstDSI | CCRYGG | 2 cut(s) | 97, 544 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 207 |
| BstF5I | GGATG | 5 cut(s) | 93, 819, 979, 1081, 1360 |
| BstHHI | GCGC | 1 cut(s) | 398 |
| BstMAI | GTCTC | 4 cut(s) | 26, 84, 345, 456 |
| BstMCI | CGRYCG | 1 cut(s) | 37 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1046 |
| BstNI | CCWGG | 2 cut(s) | 207, 485 |
| BstNSI | RCATGY | 1 cut(s) | 1459 |
| BstSCI | CCNGG | 3 cut(s) | 116, 205, 483 |
| BstSFI | CTRYAG | 1 cut(s) | 423 |
| BstSLI | GKGCMC | 1 cut(s) | 1051 |
| BstV1I | GCAGC | 2 cut(s) | 121, 409 |
| BstV2I | GAAGAC | 1 cut(s) | 1399 |
| BstX2I | RGATCY | 1 cut(s) | 1144 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 213 |
| BstYI | RGATCY | 1 cut(s) | 1144 |
| BstZ17I | GTATAC | 1 cut(s) | 1198 |
| BsuRI | GGCC | 1 cut(s) | 855 |
| BtgI | CCRYGG | 2 cut(s) | 97, 544 |
| BtsCI | GGATG | 5 cut(s) | 93, 819, 979, 1081, 1360 |
| CciI | TCATGA | 1 cut(s) | 355 |
| CfoI | GCGC | 1 cut(s) | 398 |
| Cfr13I | GGNCC | 1 cut(s) | 144 |
| CseI | GACGC | 2 cut(s) | 8, 1326 |
| Csp6I | GTAC | 5 cut(s) | 125, 151, 659, 1171, 1232 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 762, 797 |
| CviAII | CATG | 8 cut(s) | 332, 356, 519, 545, 562, 688, 1456, 1479 |
| CviQI | GTAC | 5 cut(s) | 125, 151, 659, 1171, 1232 |
| DdeI | CTNAG | 5 cut(s) | 276, 1291, 1312, 1400, 1414 |
| DraI | TTTAAA | 2 cut(s) | 48, 1017 |
| Eam1104I | CTCTTC | 1 cut(s) | 82 |
| EarI | CTCTTC | 1 cut(s) | 82 |
| Eco130I | CCWWGG | 3 cut(s) | 140, 544, 1270 |
| Eco24I | GRGCYC | 1 cut(s) | 310 |
| Eco47I | GGWCC | 1 cut(s) | 144 |
| Eco88I | CYCGRG | 2 cut(s) | 647, 1210 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 207 |
| EcoRI | GAATTC | 1 cut(s) | 1301 |
| EcoRII | CCWGG | 2 cut(s) | 205, 483 |
| EcoT14I | CCWWGG | 3 cut(s) | 140, 544, 1270 |
| EcoT38I | GRGCYC | 1 cut(s) | 310 |
| ErhI | CCWWGG | 3 cut(s) | 140, 544, 1270 |
| Esp3I | CGTCTC | 1 cut(s) | 26 |
| FaeI | CATG | 8 cut(s) | 335, 359, 522, 548, 565, 691, 1459, 1482 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 599, 631 |
| FatI | CATG | 8 cut(s) | 331, 355, 518, 544, 561, 687, 1455, 1478 |
| FbaI | TGATCA | 1 cut(s) | 352 |
| FblI | GTMKAC | 1 cut(s) | 1197 |
| Fnu4HI | GCNGC | 2 cut(s) | 110, 423 |
| FokI | GGATG | 5 cut(s) | 80, 806, 986, 1088, 1347 |
| FriOI | GRGCYC | 1 cut(s) | 310 |
| Fsp4HI | GCNGC | 2 cut(s) | 110, 423 |
| FspBI | CTAG | 6 cut(s) | 81, 141, 165, 344, 393, 1148 |
| GlaI | GCGC | 1 cut(s) | 397 |
| GluI | GCNGC | 2 cut(s) | 110, 423 |
| GsaI | CCCAGC | 1 cut(s) | 313 |
| GsuI | CTGGAG | 2 cut(s) | 189, 324 |
| HaeIII | GGCC | 1 cut(s) | 855 |
| HapII | CCGG | 1 cut(s) | 118 |
| HgaI | GACGC | 2 cut(s) | 8, 1326 |
| HhaI | GCGC | 1 cut(s) | 398 |
| Hin1II | CATG | 8 cut(s) | 335, 359, 522, 548, 565, 691, 1459, 1482 |
| Hin6I | GCGC | 1 cut(s) | 396 |
| HinP1I | GCGC | 1 cut(s) | 396 |
| HincII | GTYRAC | 1 cut(s) | 1099 |
| HindII | GTYRAC | 1 cut(s) | 1099 |
| HinfI | GANTC | 6 cut(s) | 62, 338, 365, 404, 677, 722 |
| HpaII | CCGG | 1 cut(s) | 118 |
| HphI | GGTGA | 6 cut(s) | 560, 797, 998, 1070, 1091, 1148 |
| Hpy166II | GTNNAC | 7 cut(s) | 127, 187, 706, 1049, 1099, 1171, 1198 |
| Hpy188I | TCNGA | 1 cut(s) | 409 |
| Hpy188III | TCNNGA | 4 cut(s) | 23, 303, 356, 674 |
| Hpy8I | GTNNAC | 7 cut(s) | 127, 187, 706, 1049, 1099, 1171, 1198 |
| Hpy99I | CGWCG | 4 cut(s) | 962, 1034, 1067, 1112 |
| HpyAV | CCTTC | 4 cut(s) | 986, 1127, 1151, 1301 |
| HpyCH4III | ACNGT | 5 cut(s) | 513, 557, 623, 883, 1046 |
| HpyCH4IV | ACGT | 1 cut(s) | 43 |
| HpyCH4V | TGCA | 6 cut(s) | 425, 453, 813, 1049, 1326, 1459 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1046 |
| HpyF3I | CTNAG | 5 cut(s) | 276, 1291, 1312, 1400, 1414 |
| HpySE526I | ACGT | 1 cut(s) | 43 |
| Hsp92II | CATG | 8 cut(s) | 335, 359, 522, 548, 565, 691, 1459, 1482 |
| HspAI | GCGC | 1 cut(s) | 396 |
| Ksp22I | TGATCA | 1 cut(s) | 352 |
| LmnI | GCTCC | 5 cut(s) | 109, 117, 204, 305, 546 |
| Lsp1109I | GCAGC | 2 cut(s) | 121, 409 |
| LweI | GCATC | 2 cut(s) | 497, 880 |
| MaeI | CTAG | 6 cut(s) | 81, 141, 165, 344, 393, 1148 |
| MaeII | ACGT | 1 cut(s) | 43 |
| MaeIII | GTNAC | 3 cut(s) | 557, 1058, 1151 |
| MflI | RGATCY | 1 cut(s) | 1144 |
| MhlI | GDGCHC | 4 cut(s) | 106, 310, 543, 1051 |
| MlyI | GAGTC | 4 cut(s) | 71, 347, 413, 671 |
| MseI | TTAA | 3 cut(s) | 47, 966, 1016 |
| MslI | CAYNNNNRTG | 2 cut(s) | 549, 1460 |
| MspI | CCGG | 1 cut(s) | 118 |
| MspR9I | CCNGG | 3 cut(s) | 118, 207, 485 |
| Mva1269I | GAATGC | 2 cut(s) | 834, 1353 |
| MvaI | CCWGG | 2 cut(s) | 207, 485 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1046 |
| NciI | CCSGG | 1 cut(s) | 118 |
| NcoI | CCATGG | 1 cut(s) | 544 |
| NlaIII | CATG | 8 cut(s) | 335, 359, 522, 548, 565, 691, 1459, 1482 |
| NlaIV | GGNNCC | 3 cut(s) | 200, 307, 321 |
| NmuCI | GTSAC | 1 cut(s) | 1058 |
| NspI | RCATGY | 1 cut(s) | 1459 |
| NspV | TTCGAA | 1 cut(s) | 1305 |
| PagI | TCATGA | 1 cut(s) | 355 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 30, 1107 |
| PctI | GAATGC | 2 cut(s) | 834, 1353 |
| PfeI | GAWTC | 2 cut(s) | 365, 722 |
| PfoI | TCCNGGA | 1 cut(s) | 205 |
| PkrI | GCNGC | 2 cut(s) | 111, 424 |
| Ple19I | CGATCG | 1 cut(s) | 37 |
| PleI | GAGTC | 4 cut(s) | 70, 346, 412, 671 |
| PpsI | GAGTC | 4 cut(s) | 70, 346, 412, 671 |
| PsiI | TTATAA | 2 cut(s) | 503, 1486 |
| Psp6I | CCWGG | 2 cut(s) | 205, 483 |
| PspFI | CCCAGC | 1 cut(s) | 309 |
| PspGI | CCWGG | 2 cut(s) | 205, 483 |
| PspN4I | GGNNCC | 3 cut(s) | 200, 307, 321 |
| PspPI | GGNCC | 1 cut(s) | 144 |
| PstI | CTGCAG | 1 cut(s) | 427 |
| PsuI | RGATCY | 1 cut(s) | 1144 |
| PvuI | CGATCG | 1 cut(s) | 37 |
| RsaI | GTAC | 5 cut(s) | 126, 152, 660, 1172, 1233 |
| RsaNI | GTAC | 5 cut(s) | 125, 151, 659, 1171, 1232 |
| RseI | CAYNNNNRTG | 2 cut(s) | 549, 1460 |
| SaqAI | TTAA | 3 cut(s) | 47, 966, 1016 |
| SatI | GCNGC | 2 cut(s) | 110, 423 |
| Sau96I | GGNCC | 1 cut(s) | 144 |
| ScaI | AGTACT | 1 cut(s) | 152 |
| SchI | GAGTC | 4 cut(s) | 71, 347, 413, 671 |
| ScrFI | CCNGG | 3 cut(s) | 118, 207, 485 |
| SduI | GDGCHC | 4 cut(s) | 106, 310, 543, 1051 |
| SfaNI | GCATC | 2 cut(s) | 497, 880 |
| SfcI | CTRYAG | 1 cut(s) | 423 |
| SfuI | TTCGAA | 1 cut(s) | 1305 |
| SinI | GGWCC | 1 cut(s) | 144 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 549, 1460 |
| SsiI | CCGC | 4 cut(s) | 107, 691, 1040, 1125 |
| SspI | AATATT | 1 cut(s) | 1254 |
| SspMI | CTAG | 6 cut(s) | 81, 141, 165, 344, 393, 1148 |
| StyD4I | CCNGG | 3 cut(s) | 116, 205, 483 |
| StyI | CCWWGG | 3 cut(s) | 140, 544, 1270 |
| TaaI | ACNGT | 5 cut(s) | 513, 557, 623, 883, 1046 |
| TaiI | ACGT | 1 cut(s) | 46 |
| TaqI | TCGA | 4 cut(s) | 24, 37, 766, 1305 |
| TatI | WGTACW | 3 cut(s) | 124, 150, 1170 |
| TfiI | GAWTC | 2 cut(s) | 365, 722 |
| Tru1I | TTAA | 3 cut(s) | 47, 966, 1016 |
| Tru9I | TTAA | 3 cut(s) | 47, 966, 1016 |
| TseFI | GTSAC | 1 cut(s) | 1058 |
| TseI | GCWGC | 2 cut(s) | 109, 422 |
| Tsp45I | GTSAC | 1 cut(s) | 1058 |
| TspGWI | ACGGA | 2 cut(s) | 86, 1359 |
| VneI | GTGCAC | 1 cut(s) | 1047 |
| VpaK11BI | GGWCC | 1 cut(s) | 144 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 207 |
| XapI | RAATTY | 5 cut(s) | 50, 580, 631, 756, 1301 |
| XceI | RCATGY | 1 cut(s) | 1459 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 213 |
| XmaJI | CCTAGG | 1 cut(s) | 140 |
| XmiI | GTMKAC | 1 cut(s) | 1197 |
| XspI | CTAG | 6 cut(s) | 81, 141, 165, 344, 393, 1148 |
| ZrmI | AGTACT | 1 cut(s) | 152 |