Rorug07G0199100

Cleavage and polyadenylation specificity factor subunit

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Reverse (-)
17233600 .. 17235087
1488 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0199100.1

Sequence Viewer

Length: 1488 bp
ATGGAGAAGATTATACAGCGTCTCGACATAACCGATCGAATACGTTTAAAATTTGTCTGTGAGTCTTGGAGGTCAGTTTCTAGGCGAAGAGACATCCGTGGTGCTCCGCAGCTCCCCCGGTTAGTACACCCTCATAACCCTAGGTCCAAGTACTTGATATTTTCTAGCCTCACTAATGGTCAAGTTCACAAGTTGAGGCTCCCTCCAGGAGGGTGGTGGTTTTATGGTTCTTCTAAAGGTTGGTTGATTATGGTCAAAGGAAAAGGACTAAACGCTGAGATACTTTTACTAAACCCGATTTCTGGAGCCCAGCACAAGGTTCCATCTTTCCATGATGAGTCTCTAGTAATTGATCATGAAGCTGATTCTTTCCTTGAAAATATAGAATTATCTAGCGCAAACGAGTCCGAATGTATGGTGGCTGCAGTTTTTGAATGTGTATTAGGTTTGTGCAAACTTGGAGACAAAAGCTGGACATTCTTCCTGGCATCAGGGTATATTATAAATATACTGTTTTCATGTGGCAAATTATATGCCGTGCTCCATGGTGATGACGGTAACATGGAAGATGAAAGTTTGAATTTTGGAGATAATGTAGTAGAAGTGAAGTTCGTCTTTGACAGTTTTGAAAATTTATTGAATAACCCCGAGTTTATTGTACCAGAGATTTATCCCGACTCTACGATCATGCGGAATAGTGAAGTGAACTCATATTTGTTAGAATCAGCGAACAATGAAGTTTTGTTGATCCATCAAATTTATGATCGAAAAACAATGTATGTGGGTGAGGAAGATGATCTAATTCACATCTGCATTATCATCCACATCATCAGCATTCTGTTAGGGCAGATCGGCCTTATGATTGAACTCAATTCTTTTACTGTTGCTGATGCCCTTGTATGCTTATTCATTTTCGTTGGTGCTTTCCTCGTTTCCTTTTTTCTTGGTGGTGTTTTCGTCGCCGTTAATAAGGATGATGAGGGTGGTGATGAAGGAAACAACAACAATGAACATTTAAAAGGAGATGACGACGATGAAGCGGACGGTGCACCAGTAGGTGACGACGACAATGAGGATGGTGAGAGTGATGAGGAAGTTGACGACAGCGACGAAGAAGATGAGGGCGGTGTGGAAGGTGATAGAGATCTAGGTTACGAAGGACAGAATGTGTACTTTAGAACAAGTGGTTTTAGGGTATACAAGATTGGCTCGGGCAACAACTTTGATAGGGTACAAAGTTTGGGGGATCAAATATTATTATTGGCAGACCAAGGTTCTTCCTTGTGCCTCTCAGCAAGTGAATTCGAAGGCTTAGATGGGAATTGCATTTATTTTGCGTCAAACGGAATGCGTAGGCTACATCCTTTGGAAACACTCAAACCAAATATGAATTATGATCTTAGTGTCTTCTGCTTAGATGATGAAAAAATTGAGCCATTTTTTTCAGGTTTTGACATGCAAATGCGTTTCTTCATTCCATGTTTATAA

Protein Analysis

495

Amino Acids

55.51

Weight (kDa)

4.41

Isoelectric Point (pI)

41.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 55 - 255 1.4e-15 KIB1-4 beta-propeller
Beta-prop_KIB1-4 PF03478 392 - 448 2.6e-12 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 503, 1486
AccI GTMKAC 1 cut(s) 1197
AciI CCGC 4 cut(s) 107, 691, 1040, 1125
AclWI GGATC 2 cut(s) 742, 1254
AcsI RAATTY 5 cut(s) 50, 580, 631, 756, 1301
AfaI GTAC 5 cut(s) 126, 152, 660, 1172, 1233
AfiI CCNNNNNNNGG 3 cut(s) 209, 302, 316
AgsI TTSAA 6 cut(s) 377, 434, 580, 629, 640, 866
AjnI CCWGG 2 cut(s) 205, 483
AluBI AGCT 3 cut(s) 112, 362, 471
AluI AGCT 3 cut(s) 112, 362, 471
Alw21I GWGCWC 3 cut(s) 106, 543, 1051
Alw26I GTCTC 4 cut(s) 26, 84, 345, 456
Alw44I GTGCAC 1 cut(s) 1047
AlwI GGATC 2 cut(s) 742, 1254
Ama87I CYCGRG 2 cut(s) 647, 1210
AoxI GGCC 1 cut(s) 853
ApaLI GTGCAC 1 cut(s) 1047
ApeKI GCWGC 2 cut(s) 109, 422
ApoI RAATTY 5 cut(s) 50, 580, 631, 756, 1301
AspA2I CCTAGG 1 cut(s) 140
AspLEI GCGC 1 cut(s) 398
AspS9I GGNCC 1 cut(s) 144
AsuC2I CCSGG 1 cut(s) 118
AsuHPI GGTGA 6 cut(s) 560, 797, 998, 1070, 1091, 1148
AsuII TTCGAA 1 cut(s) 1305
AvaI CYCGRG 2 cut(s) 647, 1210
AvaII GGWCC 1 cut(s) 144
AvrII CCTAGG 1 cut(s) 140
BaeGI GKGCMC 1 cut(s) 1051
BanII GRGCYC 1 cut(s) 310
BbsI GAAGAC 1 cut(s) 1399
Bbv12I GWGCWC 3 cut(s) 106, 543, 1051
BbvI GCAGC 2 cut(s) 121, 409
BccI CCATC 4 cut(s) 331, 759, 1070, 1310
BceAI ACGGC 2 cut(s) 521, 947
BciT130I CCWGG 2 cut(s) 207, 485
BclI TGATCA 1 cut(s) 352
BcnI CCSGG 1 cut(s) 118
BcoDI GTCTC 4 cut(s) 26, 84, 345, 456
BfaI CTAG 6 cut(s) 81, 141, 165, 344, 393, 1148
BfmI CTRYAG 1 cut(s) 423
BglII AGATCT 1 cut(s) 1144
BisI GCNGC 2 cut(s) 110, 423
BlnI CCTAGG 1 cut(s) 140
BlsI GCNGC 2 cut(s) 111, 424
BmcAI AGTACT 1 cut(s) 152
Bme1390I CCNGG 3 cut(s) 118, 207, 485
Bme18I GGWCC 1 cut(s) 144
BmeT110I CYCGRG 2 cut(s) 647, 1210
BmgT120I GGNCC 1 cut(s) 144
BmiI GGNNCC 3 cut(s) 200, 307, 321
BmrFI CCNGG 3 cut(s) 118, 207, 485
BmsI GCATC 2 cut(s) 497, 880
BpiI GAAGAC 1 cut(s) 1399
BplI GAGNNNNNCTC 2 cut(s) 187, 219
BpmI CTGGAG 2 cut(s) 189, 324
Bpu14I TTCGAA 1 cut(s) 1305
BpuMI CCSGG 1 cut(s) 118
BsaBI GATNNNNATC 1 cut(s) 1143
BsaJI CCNNGG 5 cut(s) 97, 116, 140, 544, 1270
BsaXI ACNNNNNCTCC 2 cut(s) 579, 609
Bsc4I CCNNNNNNNGG 3 cut(s) 209, 302, 316
Bse1I ACTGG 1 cut(s) 1052
Bse8I GATNNNNATC 1 cut(s) 1143
BseBI CCWGG 2 cut(s) 207, 485
BseDI CCNNGG 5 cut(s) 97, 116, 140, 544, 1270
BseGI GGATG 5 cut(s) 93, 819, 979, 1081, 1360
BseJI GATNNNNATC 1 cut(s) 1143
BseLI CCNNNNNNNGG 3 cut(s) 209, 302, 316
BseMII CTCAG 2 cut(s) 267, 1305
BseNI ACTGG 1 cut(s) 1052
BseSI GKGCMC 1 cut(s) 1051
BseXI GCAGC 2 cut(s) 121, 409
BseYI CCCAGC 1 cut(s) 309
Bsh1285I CGRYCG 1 cut(s) 37
BshFI GGCC 1 cut(s) 855
BsiEI CGRYCG 1 cut(s) 37
BsiHKAI GWGCWC 3 cut(s) 106, 543, 1051
BsiHKCI CYCGRG 2 cut(s) 647, 1210
BsiSI CCGG 1 cut(s) 118
BslI CCNNNNNNNGG 3 cut(s) 209, 302, 316
BsmAI GTCTC 4 cut(s) 26, 84, 345, 456
BsmBI CGTCTC 1 cut(s) 26
BsmI GAATGC 2 cut(s) 834, 1353
BsnI GGCC 1 cut(s) 855
BsoBI CYCGRG 2 cut(s) 647, 1210
Bsp119I TTCGAA 1 cut(s) 1305
Bsp1286I GDGCHC 4 cut(s) 106, 310, 543, 1051
Bsp19I CCATGG 1 cut(s) 544
BspACI CCGC 4 cut(s) 107, 691, 1040, 1125
BspANI GGCC 1 cut(s) 855
BspCNI CTCAG 2 cut(s) 268, 1304
BspHI TCATGA 1 cut(s) 355
BspLI GGNNCC 3 cut(s) 200, 307, 321
BspMAI CTGCAG 1 cut(s) 427
BspPI GGATC 2 cut(s) 742, 1254
BspT104I TTCGAA 1 cut(s) 1305
BsrI ACTGG 1 cut(s) 1052
BssECI CCNNGG 5 cut(s) 97, 116, 140, 544, 1270
BssNAI GTATAC 1 cut(s) 1198
BssT1I CCWWGG 3 cut(s) 140, 544, 1270
Bst1107I GTATAC 1 cut(s) 1198
Bst2UI CCWGG 2 cut(s) 207, 485
Bst4CI ACNGT 5 cut(s) 513, 557, 623, 883, 1046
Bst6I CTCTTC 1 cut(s) 82
BstBI TTCGAA 1 cut(s) 1305
BstDEI CTNAG 5 cut(s) 276, 1291, 1312, 1400, 1414
BstDSI CCRYGG 2 cut(s) 97, 544
BstENI CCTNNNNNAGG 1 cut(s) 207
BstF5I GGATG 5 cut(s) 93, 819, 979, 1081, 1360
BstHHI GCGC 1 cut(s) 398
BstMAI GTCTC 4 cut(s) 26, 84, 345, 456
BstMCI CGRYCG 1 cut(s) 37
BstMWI GCNNNNNNNGC 1 cut(s) 1046
BstNI CCWGG 2 cut(s) 207, 485
BstNSI RCATGY 1 cut(s) 1459
BstSCI CCNGG 3 cut(s) 116, 205, 483
BstSFI CTRYAG 1 cut(s) 423
BstSLI GKGCMC 1 cut(s) 1051
BstV1I GCAGC 2 cut(s) 121, 409
BstV2I GAAGAC 1 cut(s) 1399
BstX2I RGATCY 1 cut(s) 1144
BstXI CCANNNNNNTGG 1 cut(s) 213
BstYI RGATCY 1 cut(s) 1144
BstZ17I GTATAC 1 cut(s) 1198
BsuRI GGCC 1 cut(s) 855
BtgI CCRYGG 2 cut(s) 97, 544
BtsCI GGATG 5 cut(s) 93, 819, 979, 1081, 1360
CciI TCATGA 1 cut(s) 355
CfoI GCGC 1 cut(s) 398
Cfr13I GGNCC 1 cut(s) 144
CseI GACGC 2 cut(s) 8, 1326
Csp6I GTAC 5 cut(s) 125, 151, 659, 1171, 1232
CspCI CAANNNNNGTGG 2 cut(s) 762, 797
CviAII CATG 8 cut(s) 332, 356, 519, 545, 562, 688, 1456, 1479
CviQI GTAC 5 cut(s) 125, 151, 659, 1171, 1232
DdeI CTNAG 5 cut(s) 276, 1291, 1312, 1400, 1414
DraI TTTAAA 2 cut(s) 48, 1017
Eam1104I CTCTTC 1 cut(s) 82
EarI CTCTTC 1 cut(s) 82
Eco130I CCWWGG 3 cut(s) 140, 544, 1270
Eco24I GRGCYC 1 cut(s) 310
Eco47I GGWCC 1 cut(s) 144
Eco88I CYCGRG 2 cut(s) 647, 1210
EcoNI CCTNNNNNAGG 1 cut(s) 207
EcoRI GAATTC 1 cut(s) 1301
EcoRII CCWGG 2 cut(s) 205, 483
EcoT14I CCWWGG 3 cut(s) 140, 544, 1270
EcoT38I GRGCYC 1 cut(s) 310
ErhI CCWWGG 3 cut(s) 140, 544, 1270
Esp3I CGTCTC 1 cut(s) 26
FaeI CATG 8 cut(s) 335, 359, 522, 548, 565, 691, 1459, 1482
FalI AAGNNNNNCTT 2 cut(s) 599, 631
FatI CATG 8 cut(s) 331, 355, 518, 544, 561, 687, 1455, 1478
FbaI TGATCA 1 cut(s) 352
FblI GTMKAC 1 cut(s) 1197
Fnu4HI GCNGC 2 cut(s) 110, 423
FokI GGATG 5 cut(s) 80, 806, 986, 1088, 1347
FriOI GRGCYC 1 cut(s) 310
Fsp4HI GCNGC 2 cut(s) 110, 423
FspBI CTAG 6 cut(s) 81, 141, 165, 344, 393, 1148
GlaI GCGC 1 cut(s) 397
GluI GCNGC 2 cut(s) 110, 423
GsaI CCCAGC 1 cut(s) 313
GsuI CTGGAG 2 cut(s) 189, 324
HaeIII GGCC 1 cut(s) 855
HapII CCGG 1 cut(s) 118
HgaI GACGC 2 cut(s) 8, 1326
HhaI GCGC 1 cut(s) 398
Hin1II CATG 8 cut(s) 335, 359, 522, 548, 565, 691, 1459, 1482
Hin6I GCGC 1 cut(s) 396
HinP1I GCGC 1 cut(s) 396
HincII GTYRAC 1 cut(s) 1099
HindII GTYRAC 1 cut(s) 1099
HinfI GANTC 6 cut(s) 62, 338, 365, 404, 677, 722
HpaII CCGG 1 cut(s) 118
HphI GGTGA 6 cut(s) 560, 797, 998, 1070, 1091, 1148
Hpy166II GTNNAC 7 cut(s) 127, 187, 706, 1049, 1099, 1171, 1198
Hpy188I TCNGA 1 cut(s) 409
Hpy188III TCNNGA 4 cut(s) 23, 303, 356, 674
Hpy8I GTNNAC 7 cut(s) 127, 187, 706, 1049, 1099, 1171, 1198
Hpy99I CGWCG 4 cut(s) 962, 1034, 1067, 1112
HpyAV CCTTC 4 cut(s) 986, 1127, 1151, 1301
HpyCH4III ACNGT 5 cut(s) 513, 557, 623, 883, 1046
HpyCH4IV ACGT 1 cut(s) 43
HpyCH4V TGCA 6 cut(s) 425, 453, 813, 1049, 1326, 1459
HpyF10VI GCNNNNNNNGC 1 cut(s) 1046
HpyF3I CTNAG 5 cut(s) 276, 1291, 1312, 1400, 1414
HpySE526I ACGT 1 cut(s) 43
Hsp92II CATG 8 cut(s) 335, 359, 522, 548, 565, 691, 1459, 1482
HspAI GCGC 1 cut(s) 396
Ksp22I TGATCA 1 cut(s) 352
LmnI GCTCC 5 cut(s) 109, 117, 204, 305, 546
Lsp1109I GCAGC 2 cut(s) 121, 409
LweI GCATC 2 cut(s) 497, 880
MaeI CTAG 6 cut(s) 81, 141, 165, 344, 393, 1148
MaeII ACGT 1 cut(s) 43
MaeIII GTNAC 3 cut(s) 557, 1058, 1151
MflI RGATCY 1 cut(s) 1144
MhlI GDGCHC 4 cut(s) 106, 310, 543, 1051
MlyI GAGTC 4 cut(s) 71, 347, 413, 671
MseI TTAA 3 cut(s) 47, 966, 1016
MslI CAYNNNNRTG 2 cut(s) 549, 1460
MspI CCGG 1 cut(s) 118
MspR9I CCNGG 3 cut(s) 118, 207, 485
Mva1269I GAATGC 2 cut(s) 834, 1353
MvaI CCWGG 2 cut(s) 207, 485
MwoI GCNNNNNNNGC 1 cut(s) 1046
NciI CCSGG 1 cut(s) 118
NcoI CCATGG 1 cut(s) 544
NlaIII CATG 8 cut(s) 335, 359, 522, 548, 565, 691, 1459, 1482
NlaIV GGNNCC 3 cut(s) 200, 307, 321
NmuCI GTSAC 1 cut(s) 1058
NspI RCATGY 1 cut(s) 1459
NspV TTCGAA 1 cut(s) 1305
PagI TCATGA 1 cut(s) 355
PcsI WCGNNNNNNNCGW 2 cut(s) 30, 1107
PctI GAATGC 2 cut(s) 834, 1353
PfeI GAWTC 2 cut(s) 365, 722
PfoI TCCNGGA 1 cut(s) 205
PkrI GCNGC 2 cut(s) 111, 424
Ple19I CGATCG 1 cut(s) 37
PleI GAGTC 4 cut(s) 70, 346, 412, 671
PpsI GAGTC 4 cut(s) 70, 346, 412, 671
PsiI TTATAA 2 cut(s) 503, 1486
Psp6I CCWGG 2 cut(s) 205, 483
PspFI CCCAGC 1 cut(s) 309
PspGI CCWGG 2 cut(s) 205, 483
PspN4I GGNNCC 3 cut(s) 200, 307, 321
PspPI GGNCC 1 cut(s) 144
PstI CTGCAG 1 cut(s) 427
PsuI RGATCY 1 cut(s) 1144
PvuI CGATCG 1 cut(s) 37
RsaI GTAC 5 cut(s) 126, 152, 660, 1172, 1233
RsaNI GTAC 5 cut(s) 125, 151, 659, 1171, 1232
RseI CAYNNNNRTG 2 cut(s) 549, 1460
SaqAI TTAA 3 cut(s) 47, 966, 1016
SatI GCNGC 2 cut(s) 110, 423
Sau96I GGNCC 1 cut(s) 144
ScaI AGTACT 1 cut(s) 152
SchI GAGTC 4 cut(s) 71, 347, 413, 671
ScrFI CCNGG 3 cut(s) 118, 207, 485
SduI GDGCHC 4 cut(s) 106, 310, 543, 1051
SfaNI GCATC 2 cut(s) 497, 880
SfcI CTRYAG 1 cut(s) 423
SfuI TTCGAA 1 cut(s) 1305
SinI GGWCC 1 cut(s) 144
SmiMI CAYNNNNRTG 2 cut(s) 549, 1460
SsiI CCGC 4 cut(s) 107, 691, 1040, 1125
SspI AATATT 1 cut(s) 1254
SspMI CTAG 6 cut(s) 81, 141, 165, 344, 393, 1148
StyD4I CCNGG 3 cut(s) 116, 205, 483
StyI CCWWGG 3 cut(s) 140, 544, 1270
TaaI ACNGT 5 cut(s) 513, 557, 623, 883, 1046
TaiI ACGT 1 cut(s) 46
TaqI TCGA 4 cut(s) 24, 37, 766, 1305
TatI WGTACW 3 cut(s) 124, 150, 1170
TfiI GAWTC 2 cut(s) 365, 722
Tru1I TTAA 3 cut(s) 47, 966, 1016
Tru9I TTAA 3 cut(s) 47, 966, 1016
TseFI GTSAC 1 cut(s) 1058
TseI GCWGC 2 cut(s) 109, 422
Tsp45I GTSAC 1 cut(s) 1058
TspGWI ACGGA 2 cut(s) 86, 1359
VneI GTGCAC 1 cut(s) 1047
VpaK11BI GGWCC 1 cut(s) 144
XagI CCTNNNNNAGG 1 cut(s) 207
XapI RAATTY 5 cut(s) 50, 580, 631, 756, 1301
XceI RCATGY 1 cut(s) 1459
XcmI CCANNNNNNNNNTGG 1 cut(s) 213
XmaJI CCTAGG 1 cut(s) 140
XmiI GTMKAC 1 cut(s) 1197
XspI CTAG 6 cut(s) 81, 141, 165, 344, 393, 1148
ZrmI AGTACT 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.