Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0002312

Physical Location & Seq

Genomic Coordinates Forward (+)

37888183 .. 37889103

Gene Structure 921 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g37990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGACTGGACTCTCGGTACCTCTCAACATGCAGGTCCATCACATTTCATTCTCTGCCCACGCGGACTCTGTCCAGACTACTGCATTTTTGGACGAGCTGAGGCCTCCTAACATAGTCCTAGTTCATGGAGGAGCTAATGAGATGGGAAGGCTAAAACAGAAGCTCGTGACCCAGTTTGCTGATTGGAACACCAAAATCCTGACCCCAAAGAATTGTCAGTCTGTTGAATTGTATTTTAACTCCCAGAAAATGGCAAAAGCTATTGGAAGGCTTGCTGAGAAGACCCCTGAAGTTTGTGAAACTGTCAGCGGTTTGCTGGTAAAAAAAGGCTTCAGTTATCAAATAATGGCTTCCGATGATCTCCATGTCTTCTCACAGCTGTGCACAGCAAATGTCACTCAACGGATTACTATTCCATATGCTAGTGGCTTCACTGTGATAAAACATCGGCTTAAGCAAATATTCGAGAGTGTAGAGTCTTCAGTGGATGAGGAATCTGGAGTGGCAACATTGCGAGTGCATGATCGGGTGACATTGAAGCAGGATACAGATAAACACATATCACTGCATTGGCCTTCGGATCCTATAAGTGACATGGTGTCCGACTCCATTGTTGCTCTTATTTTGAATATCAATCGAGAAGTCCCCAAGGTAGTTGTTGAATCAGAGGAGATGAAAACTGAGGAAGAAAATGGGAAGAAGGTGGAAAAGGTCATTCGTGCACTTCTGGTTTCACTCTTTGGCGATGTGAAGCCTGGAGAAAATGGGAAACTAGTGATTAGTGTTGATGGGAATGTGGCGCAGCTTGATAAACAGAGCGGGGATGTAGAGAGTGAAAACGAAGGTCTCAAGGAAAGAGTAAAAACAGCATTTCGTCGAATCCAAAGTGCGGTGAAGCCAATCCCTCTCCCTGCAACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016073 GO:0016180 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

Beta-Casp CPSF73-100_C Lactamase_B Lactamase_B_6 RMMBL

Protein Analysis

307

Amino Acids

33.85

Weight (kDa)

6.33

Isoelectric Point (pI)

36.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RMMBL	PF07521	6 - 66	5.3e-13	Zn-dependent metallo-hydrolase RNA specificity domain
CPSF73-100_C	PF11718	101 - 300	2.8e-51	Pre-mRNA 3'-end-processing endonuclease polyadenylation factor C-term

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61010 AT1G61010 AT1G61010 AT1G61010 AT1G61010
fragaria_vesca	FvH4_4g07000 FvH4_4g07000 FvH4_5g28761 FvH4_5g28770 FvH4_7g26770
malus_domestica	MD08G1237400.v1.1 MD15G1429300.v1.1
prunus_persica	Prupe.1G574800_v2.0.a1 Prupe.1G574800_v2.0.a1 Prupe.1G574900_v2.0.a1 Prupe.I006100_v2.0.a1 Prupe.I006100_v2.0.a1 Prupe.I006200_v2.0.a1
pyrus_communis	pycom08g20590 pycom08g20600 pycom15g37980 pycom15g37990
rosa_chinensis	RchiOBHm_Chr1g0363271 RchiOBHm_Chr4g0399131 RchiOBHm_Chr7g0220981
rosa_laevigata	RLG00000002186 RLG00000009298
rosa_multiflora	Rmu_sc0002002.1_g000015 Rmu_sc0002105.1_g000022
rosa_roxburghii	Rroxscaffold_3G00238830 Rroxscaffold_5G00344090
rosa_rugosa	Rorug04G0014100 Rorug07G0199100
rosa_samantha	Rh1DG309200 Rh4BG089900 Rh4DG084500 Rh7AG339000 Rh7BG329800 Rh7CG357100 Rh7DG337800
rosa_wichuraiana	Rw4G007590 Rw7G028840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	22
Acc65I	GGTACC	1 cut(s)	16
AccB1I	GGYRCC	1 cut(s)	16
AccB7I	CCANNNNNTGG	1 cut(s)	250
AccBSI	CCGCTC	1 cut(s)	819
AccII	CGCG	1 cut(s)	62
AciI	CCGC	4 cut(s)	62, 309, 819, 890
AclWI	GGATC	2 cut(s)	575, 588
AcuI	CTGAAG	3 cut(s)	309, 316, 465
AfaI	GTAC	1 cut(s)	18
AfiI	CCNNNNNNNGG	2 cut(s)	250, 889
AflII	CTTAAG	1 cut(s)	452
AgsI	TTSAA	4 cut(s)	227, 538, 628, 662
AhdI	GACNNNNNGTC	1 cut(s)	598
AhlI	ACTAGT	1 cut(s)	772
AjnI	CCWGG	1 cut(s)	754
AleI	CACNNNNGTG	1 cut(s)	379
AluBI	AGCT	6 cut(s)	97, 134, 163, 260, 379, 805
AluI	AGCT	6 cut(s)	97, 134, 163, 260, 379, 805
Alw21I	GWGCWC	2 cut(s)	386, 724
Alw26I	GTCTC	1 cut(s)	851
Alw44I	GTGCAC	2 cut(s)	382, 720
AlwI	GGATC	2 cut(s)	575, 588
AoxI	GGCC	2 cut(s)	101, 572
ApaLI	GTGCAC	2 cut(s)	382, 720
ApeKI	GCWGC	1 cut(s)	802
Asp718I	GGTACC	1 cut(s)	16
AspLEI	GCGC	1 cut(s)	802
AspS9I	GGNCC	1 cut(s)	34
AsuHPI	GGTGA	2 cut(s)	541, 904
AvaII	GGWCC	1 cut(s)	34
BaeGI	GKGCMC	2 cut(s)	386, 724
BamHI	GGATCC	1 cut(s)	580
BanI	GGYRCC	1 cut(s)	16
BauI	CACGAG	1 cut(s)	164
BbsI	GAAGAC	3 cut(s)	287, 361, 471
Bbv12I	GWGCWC	2 cut(s)	386, 724
BbvCI	CCTCAGC	1 cut(s)	98
BbvI	GCAGC	1 cut(s)	814
BccI	CCATC	3 cut(s)	45, 136, 782
BciT130I	CCWGG	1 cut(s)	756
BciVI	GTATCC	1 cut(s)	538
BcoDI	GTCTC	1 cut(s)	851
BcuI	ACTAGT	1 cut(s)	772
BfaI	CTAG	3 cut(s)	119, 423, 773
BfrI	CTTAAG	1 cut(s)	452
BfuAI	ACCTGC	1 cut(s)	22
BfuI	GTATCC	1 cut(s)	538
BisI	GCNGC	1 cut(s)	803
BlsI	GCNGC	1 cut(s)	804
Bme1390I	CCNGG	1 cut(s)	756
Bme18I	GGWCC	1 cut(s)	34
BmeRI	GACNNNNNGTC	1 cut(s)	598
BmgT120I	GGNCC	1 cut(s)	34
BmiI	GGNNCC	2 cut(s)	18, 582
BmrFI	CCNGG	1 cut(s)	756
BmrI	ACTGGG	1 cut(s)	166
BmuI	ACTGGG	1 cut(s)	166
BpiI	GAAGAC	3 cut(s)	287, 361, 471
BpmI	CTGGAG	2 cut(s)	519, 777
Bpu10I	CCTNAGC	1 cut(s)	98
BpuEI	CTTGAG	1 cut(s)	833
BsaI	GGTCTC	1 cut(s)	851
BsaJI	CCNNGG	1 cut(s)	648
Bsc4I	CCNNNNNNNGG	2 cut(s)	250, 889
Bse1I	ACTGG	2 cut(s)	10, 172
Bse3DI	GCAATG	1 cut(s)	509
BseBI	CCWGG	1 cut(s)	756
BseDI	CCNNGG	1 cut(s)	648
BseGI	GGATG	2 cut(s)	493, 829
BseLI	CCNNNNNNNGG	2 cut(s)	250, 889
BseMI	GCAATG	1 cut(s)	509
BseMII	CTCAG	3 cut(s)	89, 267, 672
BseNI	ACTGG	2 cut(s)	10, 172
BseRI	GAGGAG	2 cut(s)	144, 683
BseSI	GKGCMC	2 cut(s)	386, 724
BseXI	GCAGC	1 cut(s)	814
Bsh1236I	CGCG	1 cut(s)	62
BshFI	GGCC	2 cut(s)	103, 574
BshNI	GGYRCC	1 cut(s)	16
BsiHKAI	GWGCWC	2 cut(s)	386, 724
BslFI	GGGAC	1 cut(s)	629
BslI	CCNNNNNNNGG	2 cut(s)	250, 889
BsmAI	GTCTC	1 cut(s)	851
BsmFI	GGGAC	1 cut(s)	629
BsnI	GGCC	2 cut(s)	103, 574
Bso31I	GGTCTC	1 cut(s)	851
Bsp1286I	GDGCHC	2 cut(s)	386, 724
Bsp143I	GATC	3 cut(s)	358, 523, 580
BspACI	CCGC	4 cut(s)	62, 309, 819, 890
BspANI	GGCC	2 cut(s)	103, 574
BspCNI	CTCAG	3 cut(s)	90, 268, 673
BspFNI	CGCG	1 cut(s)	62
BspLI	GGNNCC	2 cut(s)	18, 582
BspMI	ACCTGC	1 cut(s)	22
BspPI	GGATC	2 cut(s)	575, 588
BspT107I	GGYRCC	1 cut(s)	16
BspTI	CTTAAG	1 cut(s)	452
BspTNI	GGTCTC	1 cut(s)	851
BsrBI	CCGCTC	1 cut(s)	819
BsrDI	GCAATG	1 cut(s)	509
BsrI	ACTGG	2 cut(s)	10, 172
BssECI	CCNNGG	1 cut(s)	648
BssMI	GATC	3 cut(s)	358, 523, 580
BssSI	CACGAG	1 cut(s)	164
BssT1I	CCWWGG	1 cut(s)	648
Bst2BI	CACGAG	1 cut(s)	164
Bst2UI	CCWGG	1 cut(s)	756
Bst4CI	ACNGT	2 cut(s)	304, 436
BstAFI	CTTAAG	1 cut(s)	452
BstC8I	GCNNGC	1 cut(s)	273
BstDEI	CTNAG	3 cut(s)	98, 276, 681
BstF5I	GGATG	2 cut(s)	493, 829
BstFNI	CGCG	1 cut(s)	62
BstHHI	GCGC	1 cut(s)	802
BstKTI	GATC	3 cut(s)	361, 526, 583
BstMAI	GTCTC	1 cut(s)	851
BstMBI	GATC	3 cut(s)	358, 523, 580
BstNI	CCWGG	1 cut(s)	756
BstNSI	RCATGY	1 cut(s)	31
BstSCI	CCNGG	1 cut(s)	754
BstSLI	GKGCMC	2 cut(s)	386, 724
BstUI	CGCG	1 cut(s)	62
BstV1I	GCAGC	1 cut(s)	814
BstV2I	GAAGAC	3 cut(s)	287, 361, 471
BstX2I	RGATCY	1 cut(s)	580
BstYI	RGATCY	1 cut(s)	580
BsuI	GTATCC	1 cut(s)	538
BsuRI	GGCC	2 cut(s)	103, 574
BtgZI	GCGATG	1 cut(s)	759
BtsCI	GGATG	2 cut(s)	493, 829
BtsI	GCAGTG	1 cut(s)	563
BtsIMutI	CAGTG	3 cut(s)	432, 489, 563
BveI	ACCTGC	1 cut(s)	22
Cac8I	GCNNGC	1 cut(s)	273
CfoI	GCGC	1 cut(s)	802
Cfr13I	GGNCC	1 cut(s)	34
Csp6I	GTAC	1 cut(s)	17
CviAII	CATG	5 cut(s)	28, 125, 365, 521, 595
CviQI	GTAC	1 cut(s)	17
DdeI	CTNAG	3 cut(s)	98, 276, 681
DpnI	GATC	3 cut(s)	360, 525, 582
DpnII	GATC	3 cut(s)	358, 523, 580
DriI	GACNNNNNGTC	1 cut(s)	598
Eam1105I	GACNNNNNGTC	1 cut(s)	598
Eco130I	CCWWGG	1 cut(s)	648
Eco147I	AGGCCT	1 cut(s)	103
Eco31I	GGTCTC	1 cut(s)	851
Eco47I	GGWCC	1 cut(s)	34
Eco57I	CTGAAG	3 cut(s)	309, 316, 465
EcoRII	CCWGG	1 cut(s)	754
EcoT14I	CCWWGG	1 cut(s)	648
ErhI	CCWWGG	1 cut(s)	648
FaeI	CATG	5 cut(s)	31, 128, 368, 524, 598
FaqI	GGGAC	1 cut(s)	629
FatI	CATG	5 cut(s)	27, 124, 364, 520, 594
FauI	CCCGC	1 cut(s)	812
FauNDI	CATATG	1 cut(s)	418
Fnu4HI	GCNGC	1 cut(s)	803
FokI	GGATG	2 cut(s)	500, 836
Fsp4HI	GCNGC	1 cut(s)	803
FspBI	CTAG	3 cut(s)	119, 423, 773
GlaI	GCGC	1 cut(s)	801
GluI	GCNGC	1 cut(s)	803
GsuI	CTGGAG	2 cut(s)	519, 777
HaeIII	GGCC	2 cut(s)	103, 574
HhaI	GCGC	1 cut(s)	802
Hin1II	CATG	5 cut(s)	31, 128, 368, 524, 598
Hin6I	GCGC	1 cut(s)	800
HinP1I	GCGC	1 cut(s)	800
HinfI	GANTC	7 cut(s)	9, 65, 476, 494, 605, 662, 879
HphI	GGTGA	2 cut(s)	541, 904
Hpy166II	GTNNAC	2 cut(s)	384, 722
Hpy188I	TCNGA	4 cut(s)	355, 580, 604, 667
Hpy188III	TCNNGA	6 cut(s)	73, 166, 199, 466, 498, 638
Hpy8I	GTNNAC	2 cut(s)	384, 722
Hpy99I	CGWCG	1 cut(s)	879
HpyAV	CCTTC	5 cut(s)	141, 261, 585, 694, 836
HpyCH4III	ACNGT	2 cut(s)	304, 436
HpyCH4IV	ACGT	1 cut(s)	917
HpyCH4V	TGCA	7 cut(s)	31, 83, 384, 520, 568, 722, 914
HpyF3I	CTNAG	3 cut(s)	98, 276, 681
HpySE526I	ACGT	1 cut(s)	917
Hsp92II	CATG	5 cut(s)	31, 128, 368, 524, 598
HspAI	GCGC	1 cut(s)	800
KpnI	GGTACC	1 cut(s)	20
Kzo9I	GATC	3 cut(s)	358, 523, 580
LmnI	GCTCC	1 cut(s)	131
Lsp1109I	GCAGC	1 cut(s)	814
MaeI	CTAG	3 cut(s)	119, 423, 773
MaeII	ACGT	1 cut(s)	917
MaeIII	GTNAC	4 cut(s)	166, 394, 529, 590
MalI	GATC	3 cut(s)	360, 525, 582
MbiI	CCGCTC	1 cut(s)	819
MboI	GATC	3 cut(s)	358, 523, 580
MboII	GAAGA	5 cut(s)	292, 361, 471, 698, 709
MflI	RGATCY	1 cut(s)	580
MhlI	GDGCHC	2 cut(s)	386, 724
MluCI	AATT	2 cut(s)	211, 227
MlyI	GAGTC	4 cut(s)	3, 59, 485, 599
MmeI	TCCRAC	1 cut(s)	627
MnlI	CCTC	8 cut(s)	30, 93, 114, 122, 484, 661, 676, 915
MseI	TTAA	2 cut(s)	237, 453
MslI	CAYNNNNRTG	1 cut(s)	379
MspA1I	CMGCKG	2 cut(s)	309, 379
MspCI	CTTAAG	1 cut(s)	452
MspR9I	CCNGG	1 cut(s)	756
MvaI	CCWGG	1 cut(s)	756
MvnI	CGCG	1 cut(s)	62
NdeI	CATATG	1 cut(s)	418
NdeII	GATC	3 cut(s)	358, 523, 580
NlaIII	CATG	5 cut(s)	31, 128, 368, 524, 598
NlaIV	GGNNCC	2 cut(s)	18, 582
NmuCI	GTSAC	4 cut(s)	166, 394, 529, 590
NspI	RCATGY	1 cut(s)	31
OliI	CACNNNNGTG	1 cut(s)	379
PceI	AGGCCT	1 cut(s)	103
PfeI	GAWTC	3 cut(s)	494, 662, 879
PflFI	GACNNNGTC	1 cut(s)	68
PflMI	CCANNNNNTGG	1 cut(s)	250
PkrI	GCNGC	1 cut(s)	804
PleI	GAGTC	4 cut(s)	3, 59, 484, 599
PpsI	GAGTC	4 cut(s)	3, 59, 484, 599
Psp6I	CCWGG	1 cut(s)	754
PspGI	CCWGG	1 cut(s)	754
PspN4I	GGNNCC	2 cut(s)	18, 582
PspPI	GGNCC	1 cut(s)	34
PsuI	RGATCY	1 cut(s)	580
PsyI	GACNNNGTC	1 cut(s)	68
PvuII	CAGCTG	1 cut(s)	379
RsaI	GTAC	1 cut(s)	18
RsaNI	GTAC	1 cut(s)	17
RseI	CAYNNNNRTG	1 cut(s)	379
SaqAI	TTAA	2 cut(s)	237, 453
SatI	GCNGC	1 cut(s)	803
Sau3AI	GATC	3 cut(s)	358, 523, 580
Sau96I	GGNCC	1 cut(s)	34
SchI	GAGTC	4 cut(s)	3, 59, 485, 599
ScrFI	CCNGG	1 cut(s)	756
SduI	GDGCHC	2 cut(s)	386, 724
SinI	GGWCC	1 cut(s)	34
SmiMI	CAYNNNNRTG	1 cut(s)	379
SmlI	CTYRAG	2 cut(s)	452, 848
SmoI	CTYRAG	2 cut(s)	452, 848
SpeI	ACTAGT	1 cut(s)	772
Sse9I	AATT	2 cut(s)	211, 227
SseBI	AGGCCT	1 cut(s)	103
SsiI	CCGC	4 cut(s)	62, 309, 819, 890
SspI	AATATT	1 cut(s)	462
SspMI	CTAG	3 cut(s)	119, 423, 773
StuI	AGGCCT	1 cut(s)	103
StyD4I	CCNGG	1 cut(s)	754
StyI	CCWWGG	1 cut(s)	648
TaaI	ACNGT	2 cut(s)	304, 436
TaiI	ACGT	1 cut(s)	920
TaqI	TCGA	3 cut(s)	465, 637, 877
TasI	AATT	2 cut(s)	211, 227
TfiI	GAWTC	3 cut(s)	494, 662, 879
Tru1I	TTAA	2 cut(s)	237, 453
Tru9I	TTAA	2 cut(s)	237, 453
TscAI	CASTG	3 cut(s)	439, 489, 570
TseFI	GTSAC	4 cut(s)	166, 394, 529, 590
TseI	GCWGC	1 cut(s)	802
Tsp45I	GTSAC	4 cut(s)	166, 394, 529, 590
TspDTI	ATGAA	3 cut(s)	36, 113, 689
TspGWI	ACGGA	1 cut(s)	418
TspRI	CASTG	3 cut(s)	439, 489, 570
Tth111I	GACNNNGTC	1 cut(s)	68
Van91I	CCANNNNNTGG	1 cut(s)	250
Vha464I	CTTAAG	1 cut(s)	452
VneI	GTGCAC	2 cut(s)	382, 720
VpaK11BI	GGWCC	1 cut(s)	34
XceI	RCATGY	1 cut(s)	31
XspI	CTAG	3 cut(s)	119, 423, 773

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.