Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0002312

Physical Location & Seq

Genomic Coordinates Forward (+)

20324213 .. 20324539

Gene Structure 327 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g20600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGTGTCAGACTCGGTTGTTGCTCTTATTCTGAATATCAATCGAGAAGTCCCCAAGGTAGTTGTTGAATCAGAGGATATAAAAACTGAGGAAGAGAATGTGAAGAAGGCGGAAAAGGTTATCCATGCACTTCTTGTTTCACTCTTTGGCGACGTGAAGCCGGGAGAAAACGGGAAACTAGTGATTAGTGTTGATGGGAATGTGGCGCAGCTTGATAAACAGAGCGGGGATGTAGAGAGTGAAAACGAAGGTCTCAAGGAAAGAGTAAAAACAGCATTTCGTCGAATCCAAAGTGCGGTGAAGCCAATCCCTCTCCGTGCAACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016073 GO:0016180 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

Beta-Casp CPSF73-100_C Lactamase_B Lactamase_B_6 RMMBL

Protein Analysis

109

Amino Acids

11.8

Weight (kDa)

5.47

Isoelectric Point (pI)

42.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CPSF73-100_C	PF11718	1 - 102	4.6e-16	Pre-mRNA 3'-end-processing endonuclease polyadenylation factor C-term

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61010 AT1G61010 AT1G61010 AT1G61010 AT1G61010
fragaria_vesca	FvH4_4g07000 FvH4_4g07000 FvH4_5g28761 FvH4_5g28770 FvH4_7g26770
malus_domestica	MD08G1237400.v1.1 MD15G1429300.v1.1
prunus_persica	Prupe.1G574800_v2.0.a1 Prupe.1G574800_v2.0.a1 Prupe.1G574900_v2.0.a1 Prupe.I006100_v2.0.a1 Prupe.I006100_v2.0.a1 Prupe.I006200_v2.0.a1
pyrus_communis	pycom08g20590 pycom08g20600 pycom15g37980 pycom15g37990
rosa_chinensis	RchiOBHm_Chr1g0363271 RchiOBHm_Chr4g0399131 RchiOBHm_Chr7g0220981
rosa_laevigata	RLG00000002186 RLG00000009298
rosa_multiflora	Rmu_sc0002002.1_g000015 Rmu_sc0002105.1_g000022
rosa_roxburghii	Rroxscaffold_3G00238830 Rroxscaffold_5G00344090
rosa_rugosa	Rorug04G0014100 Rorug07G0199100
rosa_samantha	Rh1DG309200 Rh4BG089900 Rh4DG084500 Rh7AG339000 Rh7BG329800 Rh7CG357100 Rh7DG337800
rosa_wichuraiana	Rw4G007590 Rw7G028840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	225
AciI	CCGC	3 cut(s)	110, 225, 296
AfiI	CCNNNNNNNGG	1 cut(s)	295
AgsI	TTSAA	1 cut(s)	68
AhlI	ACTAGT	1 cut(s)	178
AjiI	CACGTC	1 cut(s)	154
AluBI	AGCT	1 cut(s)	211
AluI	AGCT	1 cut(s)	211
Alw26I	GTCTC	1 cut(s)	257
ApeKI	GCWGC	1 cut(s)	208
AspLEI	GCGC	1 cut(s)	208
AsuC2I	CCSGG	1 cut(s)	162
AsuHPI	GGTGA	1 cut(s)	310
BbvI	GCAGC	1 cut(s)	220
BccI	CCATC	1 cut(s)	188
BcnI	CCSGG	1 cut(s)	162
BcoDI	GTCTC	1 cut(s)	257
BcuI	ACTAGT	1 cut(s)	178
BfaI	CTAG	1 cut(s)	179
BisI	GCNGC	1 cut(s)	209
BlsI	GCNGC	1 cut(s)	210
Bme1390I	CCNGG	1 cut(s)	162
BmgBI	CACGTC	1 cut(s)	154
BmrFI	CCNGG	1 cut(s)	162
BpuEI	CTTGAG	1 cut(s)	239
BpuMI	CCSGG	1 cut(s)	162
BsaI	GGTCTC	1 cut(s)	257
BsaJI	CCNNGG	1 cut(s)	54
Bsc4I	CCNNNNNNNGG	1 cut(s)	295
BseDI	CCNNGG	1 cut(s)	54
BseGI	GGATG	1 cut(s)	235
BseLI	CCNNNNNNNGG	1 cut(s)	295
BseMII	CTCAG	1 cut(s)	78
BseXI	GCAGC	1 cut(s)	220
BsiSI	CCGG	1 cut(s)	161
BslFI	GGGAC	1 cut(s)	35
BslI	CCNNNNNNNGG	1 cut(s)	295
BsmAI	GTCTC	1 cut(s)	257
BsmFI	GGGAC	1 cut(s)	35
Bso31I	GGTCTC	1 cut(s)	257
BspACI	CCGC	3 cut(s)	110, 225, 296
BspCNI	CTCAG	1 cut(s)	79
BspTNI	GGTCTC	1 cut(s)	257
BsrBI	CCGCTC	1 cut(s)	225
BssECI	CCNNGG	1 cut(s)	54
BssT1I	CCWWGG	1 cut(s)	54
Bst6I	CTCTTC	1 cut(s)	87
BstDEI	CTNAG	2 cut(s)	87, 324
BstF5I	GGATG	1 cut(s)	235
BstHHI	GCGC	1 cut(s)	208
BstMAI	GTCTC	1 cut(s)	257
BstSCI	CCNGG	1 cut(s)	160
BstV1I	GCAGC	1 cut(s)	220
BtrI	CACGTC	1 cut(s)	154
BtsCI	GGATG	1 cut(s)	235
CfoI	GCGC	1 cut(s)	208
CviAII	CATG	1 cut(s)	125
CviJI	RGCY	3 cut(s)	160, 211, 304
CviKI_1	RGCY	3 cut(s)	160, 211, 304
DdeI	CTNAG	2 cut(s)	87, 324
Eam1104I	CTCTTC	1 cut(s)	87
EarI	CTCTTC	1 cut(s)	87
EciI	GGCGGA	1 cut(s)	125
Eco130I	CCWWGG	1 cut(s)	54
Eco31I	GGTCTC	1 cut(s)	257
EcoT14I	CCWWGG	1 cut(s)	54
ErhI	CCWWGG	1 cut(s)	54
FaeI	CATG	1 cut(s)	128
FaiI	YATR	2 cut(s)	80, 126
FaqI	GGGAC	1 cut(s)	35
FatI	CATG	1 cut(s)	124
FauI	CCCGC	1 cut(s)	218
Fnu4HI	GCNGC	1 cut(s)	209
FokI	GGATG	1 cut(s)	242
Fsp4HI	GCNGC	1 cut(s)	209
FspBI	CTAG	1 cut(s)	179
GlaI	GCGC	1 cut(s)	207
GluI	GCNGC	1 cut(s)	209
HapII	CCGG	1 cut(s)	161
HhaI	GCGC	1 cut(s)	208
Hin1II	CATG	1 cut(s)	128
Hin6I	GCGC	1 cut(s)	206
HinP1I	GCGC	1 cut(s)	206
HinfI	GANTC	3 cut(s)	11, 68, 285
HpaII	CCGG	1 cut(s)	161
HphI	GGTGA	1 cut(s)	310
Hpy188I	TCNGA	3 cut(s)	10, 33, 73
Hpy188III	TCNNGA	1 cut(s)	44
Hpy99I	CGWCG	2 cut(s)	155, 285
HpyAV	CCTTC	2 cut(s)	100, 242
HpyCH4IV	ACGT	1 cut(s)	153
HpyCH4V	TGCA	2 cut(s)	128, 320
HpyF3I	CTNAG	2 cut(s)	87, 324
HpySE526I	ACGT	1 cut(s)	153
Hsp92II	CATG	1 cut(s)	128
HspAI	GCGC	1 cut(s)	206
LpnPI	CCDG	1 cut(s)	174
Lsp1109I	GCAGC	1 cut(s)	220
MaeI	CTAG	1 cut(s)	179
MaeII	ACGT	1 cut(s)	153
MbiI	CCGCTC	1 cut(s)	225
MboII	GAAGA	2 cut(s)	104, 115
MlyI	GAGTC	1 cut(s)	5
MnlI	CCTC	3 cut(s)	67, 82, 321
MspI	CCGG	1 cut(s)	161
MspR9I	CCNGG	1 cut(s)	162
NciI	CCSGG	1 cut(s)	162
NlaIII	CATG	1 cut(s)	128
PfeI	GAWTC	2 cut(s)	68, 285
PkrI	GCNGC	1 cut(s)	210
PleI	GAGTC	1 cut(s)	5
PpsI	GAGTC	1 cut(s)	5
SatI	GCNGC	1 cut(s)	209
SchI	GAGTC	1 cut(s)	5
ScrFI	CCNGG	1 cut(s)	162
SetI	ASST	5 cut(s)	60, 120, 156, 213, 253
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
SpeI	ACTAGT	1 cut(s)	178
SsiI	CCGC	3 cut(s)	110, 225, 296
SspMI	CTAG	1 cut(s)	179
StyD4I	CCNGG	1 cut(s)	160
StyI	CCWWGG	1 cut(s)	54
TaiI	ACGT	1 cut(s)	156
TaqI	TCGA	2 cut(s)	43, 283
TfiI	GAWTC	2 cut(s)	68, 285
TseI	GCWGC	1 cut(s)	208
TspGWI	ACGGA	1 cut(s)	305
XspI	CTAG	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.