Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0002312

Physical Location & Seq

Genomic Coordinates Forward (+)

20160923 .. 20162085

Gene Structure 1163 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g26770.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGTACATTAACAAGCAGAAAATGGCTAAAGCTAATGGAAGGCCTGCTGAAGTTGGTGGAAATGTCAGCGGTTTACTGGTGAAAAAAGGTTTCGGTTATCAGATAATGGTTCCTGAAGATCTTCATGTTTACTCGCAGCTGTGCACGGCAAATGTCACTCTACGTATTACCGAACAGTGTTCTCCTACTGGTTTCATGGTTATAAAGCATCGGCTGAGGCAAATATATGAAAGCGTAGAATCTTCGGTTGATGAGGAATCTGGAGCCCCGACATTGCCAGTGCATGATCGAGTGACTGTGAGGCAGGAAACAGATAAACATGTTTCACTGCAATGGATGTCAGATCCTATAAGTGACATGGTATCAGACTCCATCATGGCTTTAATTTTGAACATCAACAGAGAAGTCCCCAAGGTAGTCATTGAATCAGAGGACATAAGAACCGAGGAAGAGAATGGGAAGAGAACAGAAAAGGTCATTGAGGCACTTCTTGTATCACTCTCTGGGGATGTGAAACCTGGAGAAAATGGGAAGTTGGTGATCATGGTTGATGGAAATATGGCACTGCTTGATAAACAAAGTGGGGACGTTGAGAGTGAAAATGGAAGACTCAAGAGTAGAGTAAAGAGAGCATTTCATCGAATTCGAAGTGCGGTGAAGCCAATTTCTCTTTCTGCATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016073 GO:0016180 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

Beta-Casp CPSF73-100_C Lactamase_B Lactamase_B_6 RMMBL

Protein Analysis

228

Amino Acids

25.16

Weight (kDa)

6.54

Isoelectric Point (pI)

55.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CPSF73-100_C	PF11718	22 - 221	1.9e-43	Pre-mRNA 3'-end-processing endonuclease polyadenylation factor C-term

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61010 AT1G61010 AT1G61010 AT1G61010 AT1G61010
fragaria_vesca	FvH4_4g07000 FvH4_4g07000 FvH4_5g28761 FvH4_5g28770 FvH4_7g26770
malus_domestica	MD08G1237400.v1.1 MD15G1429300.v1.1
prunus_persica	Prupe.1G574800_v2.0.a1 Prupe.1G574800_v2.0.a1 Prupe.1G574900_v2.0.a1 Prupe.I006100_v2.0.a1 Prupe.I006100_v2.0.a1 Prupe.I006200_v2.0.a1
pyrus_communis	pycom08g20590 pycom08g20600 pycom15g37980 pycom15g37990
rosa_chinensis	RchiOBHm_Chr1g0363271 RchiOBHm_Chr4g0399131 RchiOBHm_Chr7g0220981
rosa_laevigata	RLG00000002186 RLG00000009298
rosa_multiflora	Rmu_sc0002002.1_g000015 Rmu_sc0002105.1_g000022
rosa_roxburghii	Rroxscaffold_3G00238830 Rroxscaffold_5G00344090
rosa_rugosa	Rorug04G0014100 Rorug07G0199100
rosa_samantha	Rh1DG309200 Rh4BG089900 Rh4DG084500 Rh7AG339000 Rh7BG329800 Rh7CG357100 Rh7DG337800
rosa_wichuraiana	Rw4G007590 Rw7G028840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	203
AciI	CCGC	2 cut(s)	69, 653
AclWI	GGATC	1 cut(s)	338
AcsI	RAATTY	1 cut(s)	642
AcuI	CTGAAG	2 cut(s)	69, 135
AfaI	GTAC	1 cut(s)	5
AflIII	ACRYGT	1 cut(s)	319
AgsI	TTSAA	2 cut(s)	391, 425
AjnI	CCWGG	1 cut(s)	517
AjuI	GAANNNNNNNTTGG	1 cut(s)	655
AluBI	AGCT	2 cut(s)	32, 139
AluI	AGCT	2 cut(s)	32, 139
Alw21I	GWGCWC	1 cut(s)	146
Alw44I	GTGCAC	1 cut(s)	142
AlwI	GGATC	1 cut(s)	338
AoxI	GGCC	1 cut(s)	41
ApaLI	GTGCAC	1 cut(s)	142
ApeKI	GCWGC	1 cut(s)	136
ApoI	RAATTY	1 cut(s)	642
Asp700I	GAANNNNTTC	1 cut(s)	120
AsuHPI	GGTGA	3 cut(s)	91, 550, 667
AsuII	TTCGAA	1 cut(s)	646
BaeGI	GKGCMC	1 cut(s)	146
BanII	GRGCYC	1 cut(s)	268
BbsI	GAAGAC	1 cut(s)	613
Bbv12I	GWGCWC	1 cut(s)	146
BbvCI	CCTCAGC	1 cut(s)	215
BbvI	GCAGC	1 cut(s)	148
BccI	CCATC	2 cut(s)	380, 545
BceAI	ACGGC	1 cut(s)	162
BciT130I	CCWGG	1 cut(s)	519
BclI	TGATCA	1 cut(s)	540
BglII	AGATCT	1 cut(s)	118
BisI	GCNGC	1 cut(s)	137
BlsI	GCNGC	1 cut(s)	138
Bme1390I	CCNGG	1 cut(s)	519
BmiI	GGNNCC	2 cut(s)	111, 265
BmrFI	CCNGG	1 cut(s)	519
BmsI	GCATC	1 cut(s)	217
BpiI	GAAGAC	1 cut(s)	613
BpmI	CTGGAG	2 cut(s)	282, 540
Bpu10I	CCTNAGC	1 cut(s)	215
Bpu14I	TTCGAA	1 cut(s)	646
BpuEI	CTTGAG	1 cut(s)	596
BsaAI	YACGTR	1 cut(s)	164
BsaJI	CCNNGG	2 cut(s)	411, 444
Bse1I	ACTGG	3 cut(s)	81, 193, 278
Bse3DI	GCAATG	2 cut(s)	272, 338
BseBI	CCWGG	1 cut(s)	519
BseDI	CCNNGG	2 cut(s)	411, 444
BseGI	GGATG	2 cut(s)	342, 514
BseMI	GCAATG	2 cut(s)	272, 338
BseMII	CTCAG	1 cut(s)	206
BseNI	ACTGG	3 cut(s)	81, 193, 278
BseSI	GKGCMC	1 cut(s)	146
BseXI	GCAGC	1 cut(s)	148
BshFI	GGCC	1 cut(s)	43
BsiHKAI	GWGCWC	1 cut(s)	146
BslFI	GGGAC	2 cut(s)	392, 599
BsmFI	GGGAC	2 cut(s)	392, 599
BsnI	GGCC	1 cut(s)	43
Bsp119I	TTCGAA	1 cut(s)	646
Bsp1286I	GDGCHC	2 cut(s)	146, 268
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	4 cut(s)	118, 286, 343, 540
BspACI	CCGC	2 cut(s)	69, 653
BspANI	GGCC	1 cut(s)	43
BspCNI	CTCAG	1 cut(s)	207
BspLI	GGNNCC	2 cut(s)	111, 265
BspPI	GGATC	1 cut(s)	338
BspT104I	TTCGAA	1 cut(s)	646
BsrDI	GCAATG	2 cut(s)	272, 338
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	3 cut(s)	81, 193, 278
BssECI	CCNNGG	2 cut(s)	411, 444
BssMI	GATC	4 cut(s)	118, 286, 343, 540
BssT1I	CCWWGG	1 cut(s)	411
Bst2UI	CCWGG	1 cut(s)	519
Bst4CI	ACNGT	2 cut(s)	177, 298
Bst6I	CTCTTC	2 cut(s)	444, 455
BstAUI	TGTACA	1 cut(s)	3
BstBAI	YACGTR	1 cut(s)	164
BstBI	TTCGAA	1 cut(s)	646
BstC8I	GCNNGC	1 cut(s)	45
BstDEI	CTNAG	2 cut(s)	215, 681
BstF5I	GGATG	2 cut(s)	342, 514
BstKTI	GATC	4 cut(s)	121, 289, 346, 543
BstMBI	GATC	4 cut(s)	118, 286, 343, 540
BstNI	CCWGG	1 cut(s)	519
BstNSI	RCATGY	1 cut(s)	323
BstSCI	CCNGG	1 cut(s)	517
BstSLI	GKGCMC	1 cut(s)	146
BstSNI	TACGTA	1 cut(s)	164
BstV1I	GCAGC	1 cut(s)	148
BstV2I	GAAGAC	1 cut(s)	613
BstX2I	RGATCY	2 cut(s)	118, 343
BstYI	RGATCY	2 cut(s)	118, 343
BsuRI	GGCC	1 cut(s)	43
BtsCI	GGATG	2 cut(s)	342, 514
BtsI	GCAGTG	2 cut(s)	326, 563
BtsIMutI	CAGTG	4 cut(s)	182, 285, 326, 563
Cac8I	GCNNGC	1 cut(s)	45
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	7 cut(s)	125, 196, 284, 320, 358, 376, 544
CviJI	RGCY	8 cut(s)	26, 32, 43, 139, 214, 266, 380, 661
CviKI_1	RGCY	8 cut(s)	26, 32, 43, 139, 214, 266, 380, 661
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	2 cut(s)	215, 681
DpnI	GATC	4 cut(s)	120, 288, 345, 542
DpnII	GATC	4 cut(s)	118, 286, 343, 540
Eam1104I	CTCTTC	2 cut(s)	444, 455
EarI	CTCTTC	2 cut(s)	444, 455
Eco105I	TACGTA	1 cut(s)	164
Eco130I	CCWWGG	1 cut(s)	411
Eco147I	AGGCCT	1 cut(s)	43
Eco24I	GRGCYC	1 cut(s)	268
Eco57I	CTGAAG	2 cut(s)	69, 135
EcoRI	GAATTC	1 cut(s)	642
EcoRII	CCWGG	1 cut(s)	517
EcoT14I	CCWWGG	1 cut(s)	411
EcoT38I	GRGCYC	1 cut(s)	268
ErhI	CCWWGG	1 cut(s)	411
FaeI	CATG	7 cut(s)	128, 199, 287, 323, 361, 379, 547
FaqI	GGGAC	2 cut(s)	392, 599
FatI	CATG	7 cut(s)	124, 195, 283, 319, 357, 375, 543
FbaI	TGATCA	1 cut(s)	540
Fnu4HI	GCNGC	1 cut(s)	137
FokI	GGATG	2 cut(s)	349, 521
FriOI	GRGCYC	1 cut(s)	268
Fsp4HI	GCNGC	1 cut(s)	137
GluI	GCNGC	1 cut(s)	137
GsuI	CTGGAG	2 cut(s)	282, 540
HaeIII	GGCC	1 cut(s)	43
Hin1II	CATG	7 cut(s)	128, 199, 287, 323, 361, 379, 547
HinfI	GANTC	5 cut(s)	239, 257, 368, 425, 609
HphI	GGTGA	3 cut(s)	91, 550, 667
Hpy166II	GTNNAC	3 cut(s)	74, 130, 144
Hpy188I	TCNGA	4 cut(s)	102, 343, 367, 430
Hpy188III	TCNNGA	3 cut(s)	113, 261, 613
Hpy8I	GTNNAC	3 cut(s)	74, 130, 144
HpyAV	CCTTC	1 cut(s)	33
HpyCH4III	ACNGT	2 cut(s)	177, 298
HpyCH4IV	ACGT	2 cut(s)	163, 588
HpyCH4V	TGCA	4 cut(s)	144, 283, 331, 677
HpyF3I	CTNAG	2 cut(s)	215, 681
HpySE526I	ACGT	2 cut(s)	163, 588
Hsp92II	CATG	7 cut(s)	128, 199, 287, 323, 361, 379, 547
Ksp22I	TGATCA	1 cut(s)	540
Kzo9I	GATC	4 cut(s)	118, 286, 343, 540
LmnI	GCTCC	1 cut(s)	263
Lsp1109I	GCAGC	1 cut(s)	148
LweI	GCATC	1 cut(s)	217
MaeII	ACGT	2 cut(s)	163, 588
MaeIII	GTNAC	3 cut(s)	154, 292, 353
MalI	GATC	4 cut(s)	120, 288, 345, 542
MboI	GATC	4 cut(s)	118, 286, 343, 540
MboII	GAAGA	6 cut(s)	113, 128, 234, 461, 472, 618
MflI	RGATCY	2 cut(s)	118, 343
MhlI	GDGCHC	2 cut(s)	146, 268
MluCI	AATT	3 cut(s)	384, 642, 663
MlyI	GAGTC	2 cut(s)	362, 603
MnlI	CCTC	6 cut(s)	210, 247, 294, 424, 439, 475
MroXI	GAANNNNTTC	1 cut(s)	120
MseI	TTAA	2 cut(s)	9, 383
MslI	CAYNNNNRTG	1 cut(s)	331
MspA1I	CMGCKG	2 cut(s)	69, 139
MspR9I	CCNGG	1 cut(s)	519
MvaI	CCWGG	1 cut(s)	519
NdeII	GATC	4 cut(s)	118, 286, 343, 540
NlaIII	CATG	7 cut(s)	128, 199, 287, 323, 361, 379, 547
NlaIV	GGNNCC	2 cut(s)	111, 265
NmuCI	GTSAC	3 cut(s)	154, 292, 353
NspI	RCATGY	1 cut(s)	323
NspV	TTCGAA	1 cut(s)	646
PceI	AGGCCT	1 cut(s)	43
PciI	ACATGT	1 cut(s)	319
PdmI	GAANNNNTTC	1 cut(s)	120
PfeI	GAWTC	3 cut(s)	239, 257, 425
PkrI	GCNGC	1 cut(s)	138
PleI	GAGTC	2 cut(s)	362, 603
PpsI	GAGTC	2 cut(s)	362, 603
Ppu21I	YACGTR	1 cut(s)	164
PscI	ACATGT	1 cut(s)	319
PsiI	TTATAA	1 cut(s)	203
Psp6I	CCWGG	1 cut(s)	517
PspGI	CCWGG	1 cut(s)	517
PspN4I	GGNNCC	2 cut(s)	111, 265
PsuI	RGATCY	2 cut(s)	118, 343
PvuII	CAGCTG	1 cut(s)	139
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
RseI	CAYNNNNRTG	1 cut(s)	331
SaqAI	TTAA	2 cut(s)	9, 383
SatI	GCNGC	1 cut(s)	137
Sau3AI	GATC	4 cut(s)	118, 286, 343, 540
SchI	GAGTC	2 cut(s)	362, 603
ScrFI	CCNGG	1 cut(s)	519
SduI	GDGCHC	2 cut(s)	146, 268
SetI	ASST	8 cut(s)	34, 91, 141, 166, 417, 477, 520, 591
SfaNI	GCATC	1 cut(s)	217
SfuI	TTCGAA	1 cut(s)	646
SmiMI	CAYNNNNRTG	1 cut(s)	331
SmlI	CTYRAG	1 cut(s)	611
SmoI	CTYRAG	1 cut(s)	611
SnaBI	TACGTA	1 cut(s)	164
Sse9I	AATT	3 cut(s)	384, 642, 663
SseBI	AGGCCT	1 cut(s)	43
SsiI	CCGC	2 cut(s)	69, 653
StuI	AGGCCT	1 cut(s)	43
StyD4I	CCNGG	1 cut(s)	517
StyI	CCWWGG	1 cut(s)	411
TaaI	ACNGT	2 cut(s)	177, 298
TaiI	ACGT	2 cut(s)	166, 591
TaqI	TCGA	3 cut(s)	289, 640, 646
TasI	AATT	3 cut(s)	384, 642, 663
TatI	WGTACW	1 cut(s)	3
TfiI	GAWTC	3 cut(s)	239, 257, 425
Tru1I	TTAA	2 cut(s)	9, 383
Tru9I	TTAA	2 cut(s)	9, 383
TscAI	CASTG	4 cut(s)	182, 285, 333, 570
TseFI	GTSAC	3 cut(s)	154, 292, 353
TseI	GCWGC	1 cut(s)	136
Tsp45I	GTSAC	3 cut(s)	154, 292, 353
TspDTI	ATGAA	4 cut(s)	113, 184, 243, 626
TspRI	CASTG	4 cut(s)	182, 285, 333, 570
VneI	GTGCAC	1 cut(s)	142
XapI	RAATTY	1 cut(s)	642
XceI	RCATGY	1 cut(s)	323
XmnI	GAANNNNTTC	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.