Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002312

Physical Location & Seq

Genomic Coordinates Forward (+)

2292005 .. 2292631

Gene Structure 627 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0014100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGAACCACAAACCCAGCAACCAACCGAGGATGGAGGAAATAACAAAGCAGCCGGGAGTAGTGCTAACATGCTTTGTAGGCGGAGCAGGTGGACTCCCACTACAGATCAGATAAGAATCCTCAAGGAGCTTTTCTACAATAAGGGAGTTAGGTCCCCATCTATAGAGCAGGTTCAGAGGATCTGTCTCCAGCTGAAATGGTACGGCAAGATCGAGTTCAAGAACGTCTATTTTTGGTTCGTGAACCAAAGGGCTCGGGAGAAGCAGAAGAAGAAGTCTACTTCGGATGTTCATGTGCCCATGCAAAGATCAAGGCTTGTTGGTAATGGTAGTACCAATTGGAAACCTGAGGATCAGTATATTAACTTCGGATCTTCTGCATCTGCTTCTATTTCTTCAGCTGGTGTGATTGCTTTTAACGGGCAGATGGGGAACTATGGTGGTTATGGATCTATGAACATGGAGATTGAAACCCTTCCTCTGTTCCCCATGCATGGTGAGGACATCTTTGGCAACATGAAGACTACTTCTGATGGAGGTGGCGGTCACGGTGGTGGCTCTTACATTTCCCTTGAGCTCAGCCTTTCCTGCGAGGGCAAAGCTGGAAAAAGTTTCCGGAGCCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016073 GO:0016180 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

Beta-Casp CPSF73-100_C Lactamase_B Lactamase_B_6 RMMBL

Protein Analysis

208

Amino Acids

23.07

Weight (kDa)

9.46

Isoelectric Point (pI)

52.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	27 - 89	4.5e-10	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61010 AT1G61010 AT1G61010 AT1G61010 AT1G61010
fragaria_vesca	FvH4_4g07000 FvH4_4g07000 FvH4_5g28761 FvH4_5g28770 FvH4_7g26770
malus_domestica	MD08G1237400.v1.1 MD15G1429300.v1.1
prunus_persica	Prupe.1G574800_v2.0.a1 Prupe.1G574800_v2.0.a1 Prupe.1G574900_v2.0.a1 Prupe.I006100_v2.0.a1 Prupe.I006100_v2.0.a1 Prupe.I006200_v2.0.a1
pyrus_communis	pycom08g20590 pycom08g20600 pycom15g37980 pycom15g37990
rosa_chinensis	RchiOBHm_Chr1g0363271 RchiOBHm_Chr4g0399131 RchiOBHm_Chr7g0220981
rosa_laevigata	RLG00000002186 RLG00000009298
rosa_multiflora	Rmu_sc0002002.1_g000015 Rmu_sc0002105.1_g000022
rosa_roxburghii	Rroxscaffold_3G00238830 Rroxscaffold_5G00344090
rosa_rugosa	Rorug04G0014100 Rorug07G0199100
rosa_samantha	Rh1DG309200 Rh4BG089900 Rh4DG084500 Rh7AG339000 Rh7BG329800 Rh7CG357100 Rh7DG337800
rosa_wichuraiana	Rw4G007590 Rw7G028840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	78
Acc36I	ACCTGC	2 cut(s)	78, 160
AccI	GTMKAC	1 cut(s)	278
AccIII	TCCGGA	1 cut(s)	615
AciI	CCGC	3 cut(s)	82, 543, 622
AclWI	GGATC	4 cut(s)	188, 360, 379, 457
AcuI	CTGAAG	1 cut(s)	381
AfaI	GTAC	2 cut(s)	203, 334
AfiI	CCNNNNNNNGG	1 cut(s)	494
AgsI	TTSAA	2 cut(s)	220, 470
AleI	CACNNNNGTG	1 cut(s)	552
AluBI	AGCT	5 cut(s)	130, 193, 401, 577, 602
AluI	AGCT	5 cut(s)	130, 193, 401, 577, 602
Alw21I	GWGCWC	1 cut(s)	579
Alw26I	GTCTC	1 cut(s)	191
AlwI	GGATC	4 cut(s)	188, 360, 379, 457
Ama87I	CYCGRG	1 cut(s)	255
Aor13HI	TCCGGA	1 cut(s)	615
ApeKI	GCWGC	1 cut(s)	50
Asp700I	GAANNNNTTC	1 cut(s)	474
AspS9I	GGNCC	1 cut(s)	153
AsuC2I	CCSGG	1 cut(s)	55
AsuHPI	GGTGA	1 cut(s)	509
AvaI	CYCGRG	1 cut(s)	255
AvaII	GGWCC	1 cut(s)	153
AxyI	CCTNAGG	1 cut(s)	348
BaeGI	GKGCMC	1 cut(s)	300
BanII	GRGCYC	2 cut(s)	256, 579
BarI	GAAGNNNNNNTAC	2 cut(s)	350, 382
BbsI	GAAGAC	1 cut(s)	527
Bbv12I	GWGCWC	1 cut(s)	579
BbvI	GCAGC	1 cut(s)	62
BccI	CCATC	4 cut(s)	26, 166, 421, 527
BceAI	ACGGC	1 cut(s)	220
BcnI	CCSGG	1 cut(s)	55
BcoDI	GTCTC	1 cut(s)	191
BfmI	CTRYAG	2 cut(s)	102, 162
BfuAI	ACCTGC	2 cut(s)	78, 160
BisI	GCNGC	2 cut(s)	51, 622
BlpI	GCTNAGC	1 cut(s)	578
BlsI	GCNGC	2 cut(s)	52, 623
Bme1390I	CCNGG	1 cut(s)	55
Bme18I	GGWCC	1 cut(s)	153
BmeT110I	CYCGRG	1 cut(s)	255
BmgT120I	GGNCC	1 cut(s)	153
BmiI	GGNNCC	3 cut(s)	6, 155, 620
BmrFI	CCNGG	1 cut(s)	55
BmsI	GCATC	1 cut(s)	389
BpiI	GAAGAC	1 cut(s)	527
BpmI	CTGGAG	1 cut(s)	173
Bpu1102I	GCTNAGC	1 cut(s)	578
BpuEI	CTTGAG	2 cut(s)	107, 593
BpuMI	CCSGG	1 cut(s)	55
BsaBI	GATNNNNATC	1 cut(s)	116
BsaJI	CCNNGG	1 cut(s)	27
BsaWI	WCCGGW	1 cut(s)	615
Bsc4I	CCNNNNNNNGG	1 cut(s)	494
Bse21I	CCTNAGG	1 cut(s)	348
Bse8I	GATNNNNATC	1 cut(s)	116
BseAI	TCCGGA	1 cut(s)	615
BseDI	CCNNGG	1 cut(s)	27
BseGI	GGATG	2 cut(s)	37, 292
BseJI	GATNNNNATC	1 cut(s)	116
BseLI	CCNNNNNNNGG	1 cut(s)	494
BseMII	CTCAG	2 cut(s)	339, 592
BseSI	GKGCMC	1 cut(s)	300
BseXI	GCAGC	1 cut(s)	62
BseYI	CCCAGC	1 cut(s)	15
BsiHKAI	GWGCWC	1 cut(s)	579
BsiHKCI	CYCGRG	1 cut(s)	255
BsiSI	CCGG	2 cut(s)	54, 616
BslFI	GGGAC	1 cut(s)	139
BslI	CCNNNNNNNGG	1 cut(s)	494
BsmAI	GTCTC	1 cut(s)	191
BsmFI	GGGAC	1 cut(s)	139
BsoBI	CYCGRG	1 cut(s)	255
Bsp1286I	GDGCHC	3 cut(s)	256, 300, 579
Bsp13I	TCCGGA	1 cut(s)	615
Bsp143I	GATC	7 cut(s)	106, 180, 210, 308, 352, 371, 449
Bsp1720I	GCTNAGC	1 cut(s)	578
BspACI	CCGC	3 cut(s)	82, 543, 622
BspCNI	CTCAG	2 cut(s)	340, 591
BspEI	TCCGGA	1 cut(s)	615
BspLI	GGNNCC	3 cut(s)	6, 155, 620
BspMI	ACCTGC	2 cut(s)	78, 160
BspPI	GGATC	4 cut(s)	188, 360, 379, 457
BssECI	CCNNGG	1 cut(s)	27
BssMI	GATC	7 cut(s)	106, 180, 210, 308, 352, 371, 449
Bst4CI	ACNGT	1 cut(s)	551
BstDEI	CTNAG	2 cut(s)	348, 578
BstF5I	GGATG	2 cut(s)	37, 292
BstKTI	GATC	7 cut(s)	109, 183, 213, 311, 355, 374, 452
BstMAI	GTCTC	1 cut(s)	191
BstMBI	GATC	7 cut(s)	106, 180, 210, 308, 352, 371, 449
BstMWI	GCNNNNNNNGC	2 cut(s)	79, 588
BstNSI	RCATGY	1 cut(s)	73
BstSCI	CCNGG	1 cut(s)	53
BstSFI	CTRYAG	2 cut(s)	102, 162
BstSLI	GKGCMC	1 cut(s)	300
BstV1I	GCAGC	1 cut(s)	62
BstV2I	GAAGAC	1 cut(s)	527
BstX2I	RGATCY	3 cut(s)	180, 371, 449
BstYI	RGATCY	3 cut(s)	180, 371, 449
Bsu36I	CCTNAGG	1 cut(s)	348
BtsCI	GGATG	2 cut(s)	37, 292
BveI	ACCTGC	2 cut(s)	78, 160
Cfr13I	GGNCC	1 cut(s)	153
Csp6I	GTAC	2 cut(s)	202, 333
CviAII	CATG	7 cut(s)	70, 293, 301, 460, 490, 494, 517
CviQI	GTAC	2 cut(s)	202, 333
DdeI	CTNAG	2 cut(s)	348, 578
DpnI	GATC	7 cut(s)	108, 182, 212, 310, 354, 373, 451
DpnII	GATC	7 cut(s)	106, 180, 210, 308, 352, 371, 449
EciI	GGCGGA	1 cut(s)	97
Ecl136II	GAGCTC	1 cut(s)	577
Eco24I	GRGCYC	2 cut(s)	256, 579
Eco47I	GGWCC	1 cut(s)	153
Eco53kI	GAGCTC	1 cut(s)	577
Eco57I	CTGAAG	1 cut(s)	381
Eco81I	CCTNAGG	1 cut(s)	348
Eco88I	CYCGRG	1 cut(s)	255
EcoICRI	GAGCTC	1 cut(s)	577
EcoO109I	RGGNCCY	1 cut(s)	153
EcoT22I	ATGCAT	1 cut(s)	495
EcoT38I	GRGCYC	2 cut(s)	256, 579
FaeI	CATG	7 cut(s)	73, 296, 304, 463, 493, 497, 520
FaqI	GGGAC	1 cut(s)	139
FatI	CATG	7 cut(s)	69, 292, 300, 459, 489, 493, 516
FblI	GTMKAC	1 cut(s)	278
Fnu4HI	GCNGC	2 cut(s)	51, 622
FokI	GGATG	2 cut(s)	44, 299
FriOI	GRGCYC	2 cut(s)	256, 579
Fsp4HI	GCNGC	2 cut(s)	51, 622
GluI	GCNGC	2 cut(s)	51, 622
GsaI	CCCAGC	1 cut(s)	19
GsuI	CTGGAG	1 cut(s)	173
HapII	CCGG	2 cut(s)	54, 616
Hin1II	CATG	7 cut(s)	73, 296, 304, 463, 493, 497, 520
HinfI	GANTC	2 cut(s)	94, 117
HpaII	CCGG	2 cut(s)	54, 616
HphI	GGTGA	1 cut(s)	509
Hpy166II	GTNNAC	3 cut(s)	93, 244, 279
Hpy188I	TCNGA	5 cut(s)	111, 177, 286, 371, 532
Hpy188III	TCNNGA	4 cut(s)	220, 241, 257, 616
Hpy8I	GTNNAC	3 cut(s)	93, 244, 279
HpyAV	CCTTC	1 cut(s)	485
HpyCH4III	ACNGT	1 cut(s)	551
HpyCH4IV	ACGT	1 cut(s)	225
HpyCH4V	TGCA	3 cut(s)	304, 380, 493
HpyF10VI	GCNNNNNNNGC	2 cut(s)	79, 588
HpyF3I	CTNAG	2 cut(s)	348, 578
HpySE526I	ACGT	1 cut(s)	225
Hsp92II	CATG	7 cut(s)	73, 296, 304, 463, 493, 497, 520
Kpn2I	TCCGGA	1 cut(s)	615
Kzo9I	GATC	7 cut(s)	106, 180, 210, 308, 352, 371, 449
LmnI	GCTCC	3 cut(s)	84, 127, 618
LpnPI	CCDG	9 cut(s)	29, 67, 73, 155, 203, 360, 387, 588, 601
Lsp1109I	GCAGC	1 cut(s)	62
LweI	GCATC	1 cut(s)	389
MaeII	ACGT	1 cut(s)	225
MaeIII	GTNAC	1 cut(s)	545
MalI	GATC	7 cut(s)	108, 182, 212, 310, 354, 373, 451
MboI	GATC	7 cut(s)	106, 180, 210, 308, 352, 371, 449
MboII	GAAGA	5 cut(s)	280, 283, 366, 387, 532
MfeI	CAATTG	1 cut(s)	337
MflI	RGATCY	3 cut(s)	180, 371, 449
MhlI	GDGCHC	3 cut(s)	256, 300, 579
MluCI	AATT	1 cut(s)	337
MlyI	GAGTC	1 cut(s)	88
MnlI	CCTC	9 cut(s)	22, 29, 131, 171, 343, 489, 493, 530, 586
Mph1103I	ATGCAT	1 cut(s)	495
MroI	TCCGGA	1 cut(s)	615
MroXI	GAANNNNTTC	1 cut(s)	474
MseI	TTAA	2 cut(s)	363, 417
MslI	CAYNNNNRTG	1 cut(s)	552
MspA1I	CMGCKG	3 cut(s)	193, 401, 624
MspI	CCGG	2 cut(s)	54, 616
MspR9I	CCNGG	1 cut(s)	55
MunI	CAATTG	1 cut(s)	337
MwoI	GCNNNNNNNGC	2 cut(s)	79, 588
NciI	CCSGG	1 cut(s)	55
NdeII	GATC	7 cut(s)	106, 180, 210, 308, 352, 371, 449
NlaIII	CATG	7 cut(s)	73, 296, 304, 463, 493, 497, 520
NlaIV	GGNNCC	3 cut(s)	6, 155, 620
NmuCI	GTSAC	1 cut(s)	545
NsiI	ATGCAT	1 cut(s)	495
NspI	RCATGY	1 cut(s)	73
OliI	CACNNNNGTG	1 cut(s)	552
PaqCI	CACCTGC	1 cut(s)	78
PcsI	WCGNNNNNNNCGW	1 cut(s)	210
PdmI	GAANNNNTTC	1 cut(s)	474
PfeI	GAWTC	1 cut(s)	117
PkrI	GCNGC	2 cut(s)	52, 623
PleI	GAGTC	1 cut(s)	88
PpsI	GAGTC	1 cut(s)	88
PpuMI	RGGWCCY	1 cut(s)	153
Psp124BI	GAGCTC	1 cut(s)	579
Psp5II	RGGWCCY	1 cut(s)	153
PspFI	CCCAGC	1 cut(s)	15
PspN4I	GGNNCC	3 cut(s)	6, 155, 620
PspPI	GGNCC	1 cut(s)	153
PspPPI	RGGWCCY	1 cut(s)	153
PsuI	RGATCY	3 cut(s)	180, 371, 449
PvuII	CAGCTG	2 cut(s)	193, 401
RsaI	GTAC	2 cut(s)	203, 334
RsaNI	GTAC	2 cut(s)	202, 333
RseI	CAYNNNNRTG	1 cut(s)	552
SacI	GAGCTC	1 cut(s)	579
SaqAI	TTAA	2 cut(s)	363, 417
SatI	GCNGC	2 cut(s)	51, 622
Sau3AI	GATC	7 cut(s)	106, 180, 210, 308, 352, 371, 449
Sau96I	GGNCC	1 cut(s)	153
SchI	GAGTC	1 cut(s)	88
ScrFI	CCNGG	1 cut(s)	55
SduI	GDGCHC	3 cut(s)	256, 300, 579
SfaNI	GCATC	1 cut(s)	389
SfcI	CTRYAG	2 cut(s)	102, 162
SinI	GGWCC	1 cut(s)	153
SmiMI	CAYNNNNRTG	1 cut(s)	552
SmlI	CTYRAG	2 cut(s)	122, 572
SmoI	CTYRAG	2 cut(s)	122, 572
Sse9I	AATT	1 cut(s)	337
SsiI	CCGC	3 cut(s)	82, 543, 622
SstI	GAGCTC	1 cut(s)	579
StyD4I	CCNGG	1 cut(s)	53
TaaI	ACNGT	1 cut(s)	551
TaiI	ACGT	1 cut(s)	228
TaqI	TCGA	1 cut(s)	213
TasI	AATT	1 cut(s)	337
TauI	GCSGC	1 cut(s)	624
TfiI	GAWTC	1 cut(s)	117
Tru1I	TTAA	2 cut(s)	363, 417
Tru9I	TTAA	2 cut(s)	363, 417
TseFI	GTSAC	1 cut(s)	545
TseI	GCWGC	1 cut(s)	50
Tsp45I	GTSAC	1 cut(s)	545
TspDTI	ATGAA	3 cut(s)	281, 470, 533
VpaK11BI	GGWCC	1 cut(s)	153
XceI	RCATGY	1 cut(s)	73
XmiI	GTMKAC	1 cut(s)	278
XmnI	GAANNNNTTC	1 cut(s)	474
Zsp2I	ATGCAT	1 cut(s)	495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.