Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0002402

Physical Location & Seq

Genomic Coordinates Forward (+)

20913381 .. 20922503

Gene Structure 9123 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g29991.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2559 bp

ATGTCAGAACATCCTATCACCAAAATTCTCAATGAGAATCGTCTTGAGGGCCCAAACTTTAATGAGTGGCTCCGCAACTTGAGAATTGTTTTGACATTCGATAAGATCGCTTATGTCTTACAAAATGCACCTCCTCACACTCCTTTGGCTGAAAATGGTGTTGCTTATCAAAAGCACAAGGATGATGACACTCAAGCTAAGTGTGTTATGCTTGCATCTATGAACTCACAGCTTCAGAAGCAACATGAGAACTATGATAATGCCGCTTCTATATTGCTTCATCTGACTGAACTGTTTGGTGAGAGAAATAGAAATGTGCGCTTCACCGTCGTCAATGAACTTGTCAAGACAAAACATGTGAGGGGCACACCTGTGCATCAACATGGTCTCAAAATGATAGGTCTTATTGAGCAAATTCAAGACCTAGGATTTGAACTTGATGCGGAGCTATCTCAAGATCTTCTTCTATCCTCCCTAGATGATTCATTTTCTCAGTTCATAATGAACTACAATATGCAACAAATGGATCATACTCTTCCTGATCTTCTCAACATGTTGGTAACAGCTGAGAAGCAAATTAGGAAAGAGAGTGGAAGTGTGGCTATTGTCACTTCATCTTCATCCACCAAGTCTAAAGGAAAGGGCAAAGGGAAGAAGAAACAAGTGGCAAAGCCTAAAGGAGCAATCCAAAAGAAGAAGAAGAAGGAACAAAAGGAACCAAAAGGTGTTTGTTTCTTTTGCAACAAAGATGGACATTGGAAGAGGAACTGCAAGGCTTATCTTGCATCCTTGAAGAACAAGTCTTCAGAAGCAGTGGGAGCAAGGAAGCTTAAAGCTGGAGAAATCTCCCTACGTGTGGGAAATGGTACAAGAGTTGATGCCAAGGCCGTAGGGACTTATATTTTGAAGCTACCATCAAGAGATACATTGGAGTTGAAGAATTGTCTTTATCTTCCTATATGTATAAAGAACCTTATCTCTATCTCCATGCTTTTGAAGGATGGTTATAGAGTAGTGTTTGATAAACTAAGTGGAGACTATGTCGTTGATGGGAATACTCAGCAAATGGTAGAACTCAAGGAAGTGTCCGACAAGCCACAAGTTAACACTTCAATTCTTGATAAACAACTTCCCGAACCAACTATAGCACAAACTCCAAGGAGATCTAGTAGGATCCGGATACCTCCTGAGAGGTATGGTTTACGTCATGAAAGCCTTGGGGAGTTAAATCTCCTTGGTGACAATGAAAACTTACATGATCCTTCTACTTACACTGAGGCAATGTTAGACATTGACTCAAAGAAATGGCAAGAGGCCATGCAATCCGAGATTGACTCTATGCATACCAACCAAGTCTGGACTCTTGTTGACCCTCCACCTGGTATTAGACCAATTGGTAATAAATGGGTCTTCAAGAAAAAGATAGGCTCAGATGGTAAAATAGAAACCTACAAAGCTAGGTTAGTGGCAAAGGGCTATAAGCAAAGAGAGGGCATTGACTATGAAGATATGTTCTCTCCTGTTGCCATGGTTAAATCCATTCGGATATTACTTGCTATAGCTGCTCACTATGATTATGAGATATGGCAAATGGACATAAAAACTGCCTTTTTGAATGGCAATCTTCAGGAAGAGCTATATATGGATCAACCTGAAAGCTTTGCGTCTAAAGATAACATTCATAAGGTGTGCAAGCTTCACCGGTCCATCTATGGACTTAAGCAAGCTTCAAGGAGTTGGAACATCCGTTTTGATGATGCAGTCAAATCATTTGGTTTCACACAAAACATGGATGAACCTTGTGTTTATAAGAAGGTTAGTGGGAGTGCTGTTGTGTTCCTTGTACTTTATGTTGATGACATCCTACTATTTGGGAATGATGTAGGGATGCTATCTTCAATTAAAGTTTGGTTGTCCAAGACCTTCCTTATGAAGGATCTTGGAGAAGCTTCCTATAATGCTGTAAAGAATATCCTCAAGTACTTGAGAAGGACTAAGGATTTATTCCTTGTATATGGAGGAGGTGATTTGCAATCAGAGTTGCAAGTGGAAGCATACATAGACTCAGATTTTCAATCTGATGTGAATGACAGAAAATCCACATCAGGATTTGTTTTCACCTTGAATGGAGGTGCAGTAAGTTGGAGGAGCTGCAAGCAAGGCGTTACAGCAGATTCCACTACTGAGGCAGAATATATTGCAGCTGCAGAGGCTGCAAAGGAAGCAGTTTGGATAAAAAAGTTCATTACTGAACTTGATGTTGTTCCTACCATTGAGTCACCAATTTCACTTTACTGTGACAACAATGGGGCAATTGCTCAAGCCAAGGAACCAAGAAAATACGAGTCAGAGAAGAGTCAGAGAAGAGTGACGTCCCCAACCGCCGGCAGCCCTAGGGAGAGTGAGAATTCTGGTTCAGAGAAGAGTCTAGATGCCAAGTCTAAAGCCTTGAAATTGAAGGAAATTCCTTCGATAAGAAGGCATTGGCCATGTTTCAGAATTACTATGAGGAGAAAGCAAAGCGTGAGCACAAGGTTATGGTTCCGCGCCTCTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 rve

Protein Analysis

853

Amino Acids

96.33

Weight (kDa)

9.09

Isoelectric Point (pI)

40.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Retrotran_gag_2	PF14223	30 - 196	1.8e-12	gag-polypeptide of LTR copia-type
RVT_2	PF07727	450 - 651	5.6e-65	Reverse transcriptase (RNA-dependent DNA polymerase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002402)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g29991
malus_domestica	MD00G1044200.v1.1
prunus_persica	Prupe.2G062600_v2.0.a1 Prupe.2G064700_v2.0.a1 Prupe.6G167800_v2.0.a1
pyrus_communis	pycom13g29530 pycom17g02500 pycom39g00040 pycom976g00080
rosa_chinensis	RchiOBHm_Chr1g0376911 RchiOBHm_Chr1g0379561 RchiOBHm_Chr2g0165661 RchiOBHm_Chr2g0176521
rosa_multiflora	Rmu_sc0000070.1_g000011 Rmu_sc0000555.1_g000020 Rmu_sc0001291.1_g000051 Rmu_sc0001306.1_g000003 Rmu_sc0005142.1_g000016 Rmu_ssc0000389.1_g000014
rosa_roxburghii	Rroxscaffold_2G00096870 Rroxscaffold_5G00384810 Rroxscaffold_6G00394930
rosa_samantha	Rh1CG138000 Rh1CG192400 Rh7BG220700
rosa_wichuraiana	Rw0G002230 Rw0G012080 Rw1G007200 Rw1G008660 Rw1G011890 Rw2G018430 Rw3G008190 Rw3G020340 Rw3G024460 Rw4G000210 Rw5G007300 Rw5G015820 Rw5G032410 Rw5G048130 Rw5G049610 Rw7G025770 Rw7G028470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1809
AatII	GACGTC	1 cut(s)	2375
AccII	CGCG	1 cut(s)	2547
AccIII	TCCGGA	1 cut(s)	1176
AciI	CCGC	5 cut(s)	73, 264, 443, 2382, 2545
AclWI	GGATC	6 cut(s)	534, 1168, 1181, 1253, 1653, 1944
AcoI	YGGCCR	1 cut(s)	2486
AcsI	RAATTY	4 cut(s)	24, 414, 2407, 2463
AcuI	CTGAAG	3 cut(s)	218, 789, 1610
AcyI	GRCGYC	1 cut(s)	2372
AfaI	GTAC	3 cut(s)	868, 1845, 1982
AfiI	CCNNNNNNNGG	4 cut(s)	856, 1379, 1933, 2384
AflII	CTTAAG	1 cut(s)	1718
AflIII	ACRYGT	3 cut(s)	355, 552, 853
AgeI	ACCGGT	1 cut(s)	1701
AjnI	CCWGG	1 cut(s)	1378
AleI	CACNNNNGTG	1 cut(s)	371
Alw21I	GWGCWC	1 cut(s)	2531
Alw26I	GTCTC	2 cut(s)	392, 1029
AlwI	GGATC	6 cut(s)	534, 1168, 1181, 1253, 1653, 1944
AlwNI	CAGNNNCTG	1 cut(s)	2213
Aor13HI	TCCGGA	1 cut(s)	1176
AoxI	GGCC	4 cut(s)	49, 885, 1314, 2486
ApaI	GGGCCC	1 cut(s)	53
ApeKI	GCWGC	6 cut(s)	1562, 2151, 2201, 2204, 2213, 2388
ApoI	RAATTY	4 cut(s)	24, 414, 2407, 2463
ArsI	GACNNNNNNTTYG	4 cut(s)	413, 445, 886, 918
AsiGI	ACCGGT	1 cut(s)	1701
AspA2I	CCTAGG	2 cut(s)	424, 2393
AspLEI	GCGC	2 cut(s)	321, 2549
AspS9I	GGNCC	3 cut(s)	49, 50, 1704
AsuHPI	GGTGA	8 cut(s)	10, 311, 316, 1250, 1691, 2036, 2110, 2271
AvaII	GGWCC	1 cut(s)	1704
AvrII	CCTAGG	2 cut(s)	424, 2393
BaeGI	GKGCMC	2 cut(s)	53, 368
BaeI	ACNNNNGTAYC	2 cut(s)	858, 891
BalI	TGGCCA	1 cut(s)	2488
BamHI	GGATCC	1 cut(s)	1173
BanII	GRGCYC	1 cut(s)	53
BbsI	GAAGAC	2 cut(s)	795, 1402
Bbv12I	GWGCWC	1 cut(s)	2531
BbvI	GCAGC	6 cut(s)	1549, 2138, 2191, 2200, 2213, 2400
BccI	CCATC	6 cut(s)	743, 922, 995, 1043, 1427, 1715
BceAI	ACGGC	1 cut(s)	872
BciT130I	CCWGG	1 cut(s)	1380
BciVI	GTATCC	1 cut(s)	1173
BcoDI	GTCTC	2 cut(s)	392, 1029
BfaI	CTAG	6 cut(s)	425, 476, 1167, 1458, 2394, 2429
BfmI	CTRYAG	3 cut(s)	1143, 1557, 2205
BfrI	CTTAAG	1 cut(s)	1718
BfuI	GTATCC	1 cut(s)	1173
BglII	AGATCT	2 cut(s)	457, 1163
BisI	GCNGC	7 cut(s)	264, 1563, 2152, 2202, 2205, 2214, 2389
BlnI	CCTAGG	2 cut(s)	424, 2393
BlsI	GCNGC	7 cut(s)	265, 1564, 2153, 2203, 2206, 2215, 2390
BmcAI	AGTACT	1 cut(s)	1982
Bme1390I	CCNGG	1 cut(s)	1380
Bme18I	GGWCC	1 cut(s)	1704
BmgT120I	GGNCC	3 cut(s)	49, 50, 1704
BmiI	GGNNCC	6 cut(s)	51, 71, 717, 1175, 2331, 2543
BmrFI	CCNGG	1 cut(s)	1380
BmsI	GCATC	8 cut(s)	224, 385, 430, 794, 868, 1747, 1878, 2422
BpiI	GAAGAC	2 cut(s)	795, 1402
BplI	GAGNNNNNCTC	2 cut(s)	1319, 1351
BpmI	CTGGAG	1 cut(s)	858
BpuEI	CTTGAG	8 cut(s)	65, 100, 177, 438, 1061, 1961, 2005, 2304
BsaAI	YACGTR	1 cut(s)	854
BsaHI	GRCGYC	1 cut(s)	2372
BsaI	GGTCTC	1 cut(s)	392
BsaJI	CCNNGG	8 cut(s)	424, 882, 1157, 1216, 1234, 1527, 2325, 2393
BsaWI	WCCGGW	2 cut(s)	1176, 1701
BsaXI	ACNNNNNCTCC	6 cut(s)	1026, 1056, 1153, 1183, 2121, 2151
Bsc4I	CCNNNNNNNGG	4 cut(s)	856, 1379, 1933, 2384
Bse118I	RCCGGY	2 cut(s)	1701, 2384
Bse3DI	GCAATG	1 cut(s)	1287
BseAI	TCCGGA	1 cut(s)	1176
BseBI	CCWGG	1 cut(s)	1380
BseDI	CCNNGG	8 cut(s)	424, 882, 1157, 1216, 1234, 1527, 2325, 2393
BseGI	GGATG	9 cut(s)	10, 187, 620, 785, 1006, 1743, 1798, 1860, 1893
BseLI	CCNNNNNNNGG	4 cut(s)	856, 1379, 1933, 2384
BseMI	GCAATG	1 cut(s)	1287
BseMII	CTCAG	8 cut(s)	506, 558, 1073, 1179, 1266, 1443, 2079, 2175
BseRI	GAGGAG	4 cut(s)	123, 2034, 2161, 2524
BseSI	GKGCMC	2 cut(s)	53, 368
BseXI	GCAGC	6 cut(s)	1549, 2138, 2191, 2200, 2213, 2400
BsgI	GTGCAG	1 cut(s)	2154
Bsh1236I	CGCG	1 cut(s)	2547
BshFI	GGCC	4 cut(s)	51, 887, 1316, 2488
BshTI	ACCGGT	1 cut(s)	1701
BsiHKAI	GWGCWC	1 cut(s)	2531
BsiSI	CCGG	3 cut(s)	1177, 1702, 2385
BslFI	GGGAC	2 cut(s)	907, 2359
BslI	CCNNNNNNNGG	4 cut(s)	856, 1379, 1933, 2384
BsmAI	GTCTC	2 cut(s)	392, 1029
BsmFI	GGGAC	2 cut(s)	907, 2359
BsnI	GGCC	4 cut(s)	51, 887, 1316, 2488
Bso31I	GGTCTC	1 cut(s)	392
Bsp120I	GGGCCC	1 cut(s)	49
Bsp1286I	GDGCHC	3 cut(s)	53, 368, 2531
Bsp13I	TCCGGA	1 cut(s)	1176
Bsp143I	GATC	9 cut(s)	105, 457, 526, 541, 1163, 1173, 1258, 1645, 1936
Bsp19I	CCATGG	1 cut(s)	1527
BspACI	CCGC	5 cut(s)	73, 264, 443, 2382, 2545
BspANI	GGCC	4 cut(s)	51, 887, 1316, 2488
BspCNI	CTCAG	8 cut(s)	505, 559, 1072, 1180, 1267, 1442, 2078, 2176
BspEI	TCCGGA	1 cut(s)	1176
BspFNI	CGCG	1 cut(s)	2547
BspHI	TCATGA	1 cut(s)	1207
BspLI	GGNNCC	6 cut(s)	51, 71, 717, 1175, 2331, 2543
BspMAI	CTGCAG	1 cut(s)	2209
BspPI	GGATC	6 cut(s)	534, 1168, 1181, 1253, 1653, 1944
BspQI	GCTCTTC	1 cut(s)	1626
BspTI	CTTAAG	1 cut(s)	1718
BspTNI	GGTCTC	1 cut(s)	392
BsrDI	GCAATG	1 cut(s)	1287
BsrFI	RCCGGY	2 cut(s)	1701, 2384
BssAI	RCCGGY	2 cut(s)	1701, 2384
BssECI	CCNNGG	8 cut(s)	424, 882, 1157, 1216, 1234, 1527, 2325, 2393
BssMI	GATC	9 cut(s)	105, 457, 526, 541, 1163, 1173, 1258, 1645, 1936
BssNI	GRCGYC	1 cut(s)	2372
BssT1I	CCWWGG	8 cut(s)	424, 882, 1157, 1216, 1234, 1527, 2325, 2393
Bst2UI	CCWGG	1 cut(s)	1380
Bst4CI	ACNGT	3 cut(s)	294, 328, 2297
Bst6I	CTCTTC	6 cut(s)	540, 755, 1626, 2348, 2359, 2417
BstACI	GRCGYC	1 cut(s)	2372
BstAFI	CTTAAG	1 cut(s)	1718
BstAPI	GCANNNNNTGC	1 cut(s)	2213
BstBAI	YACGTR	1 cut(s)	854
BstC8I	GCNNGC	5 cut(s)	213, 1694, 1725, 2156, 2386
BstDSI	CCRYGG	1 cut(s)	1527
BstENI	CCTNNNNNAGG	1 cut(s)	1931
BstF5I	GGATG	9 cut(s)	10, 187, 620, 785, 1006, 1743, 1798, 1860, 1893
BstFNI	CGCG	1 cut(s)	2547
BstHHI	GCGC	2 cut(s)	321, 2549
BstKTI	GATC	9 cut(s)	108, 460, 529, 544, 1166, 1176, 1261, 1648, 1939
BstMAI	GTCTC	2 cut(s)	392, 1029
BstMBI	GATC	9 cut(s)	105, 457, 526, 541, 1163, 1173, 1258, 1645, 1936
BstMWI	GCNNNNNNNGC	8 cut(s)	238, 782, 818, 1562, 2160, 2210, 2213, 2222
BstNI	CCWGG	1 cut(s)	1380
BstNSI	RCATGY	2 cut(s)	359, 556
BstSCI	CCNGG	1 cut(s)	1378
BstSFI	CTRYAG	3 cut(s)	1143, 1557, 2205
BstSLI	GKGCMC	2 cut(s)	53, 368
BstUI	CGCG	1 cut(s)	2547
BstV1I	GCAGC	6 cut(s)	1549, 2138, 2191, 2200, 2213, 2400
BstV2I	GAAGAC	2 cut(s)	795, 1402
BstX2I	RGATCY	4 cut(s)	457, 1163, 1173, 1936
BstYI	RGATCY	4 cut(s)	457, 1163, 1173, 1936
BsuI	GTATCC	1 cut(s)	1173
BsuRI	GGCC	4 cut(s)	51, 887, 1316, 2488
BtgI	CCRYGG	1 cut(s)	1527
BtsCI	GGATG	9 cut(s)	10, 187, 620, 785, 1006, 1743, 1798, 1860, 1893
BtsI	GCAGTG	1 cut(s)	819
BtsIMutI	CAGTG	2 cut(s)	819, 1272
Cac8I	GCNNGC	5 cut(s)	213, 1694, 1725, 2156, 2386
CaiI	CAGNNNCTG	1 cut(s)	2213
CciI	TCATGA	1 cut(s)	1207
CfoI	GCGC	2 cut(s)	321, 2549
Cfr10I	RCCGGY	2 cut(s)	1701, 2384
Cfr13I	GGNCC	3 cut(s)	49, 50, 1704
CseI	GACGC	1 cut(s)	1653
CsiI	ACCWGGT	1 cut(s)	1378
Csp6I	GTAC	3 cut(s)	867, 1844, 1981
CspAI	ACCGGT	1 cut(s)	1701
CviQI	GTAC	3 cut(s)	867, 1844, 1981
DpnI	GATC	9 cut(s)	107, 459, 528, 543, 1165, 1175, 1260, 1647, 1938
DpnII	GATC	9 cut(s)	105, 457, 526, 541, 1163, 1173, 1258, 1645, 1936
EaeI	YGGCCR	1 cut(s)	2486
Eam1104I	CTCTTC	6 cut(s)	540, 755, 1626, 2348, 2359, 2417
EarI	CTCTTC	6 cut(s)	540, 755, 1626, 2348, 2359, 2417
Eco130I	CCWWGG	8 cut(s)	424, 882, 1157, 1216, 1234, 1527, 2325, 2393
Eco24I	GRGCYC	1 cut(s)	53
Eco31I	GGTCTC	1 cut(s)	392
Eco47I	GGWCC	1 cut(s)	1704
Eco57I	CTGAAG	3 cut(s)	218, 789, 1610
EcoNI	CCTNNNNNAGG	1 cut(s)	1931
EcoO109I	RGGNCCY	1 cut(s)	49
EcoRI	GAATTC	1 cut(s)	2407
EcoRII	CCWGG	1 cut(s)	1378
EcoT14I	CCWWGG	8 cut(s)	424, 882, 1157, 1216, 1234, 1527, 2325, 2393
EcoT22I	ATGCAT	1 cut(s)	1344
EcoT38I	GRGCYC	1 cut(s)	53
ErhI	CCWWGG	8 cut(s)	424, 882, 1157, 1216, 1234, 1527, 2325, 2393
FalI	AAGNNNNNCTT	2 cut(s)	447, 479
FaqI	GGGAC	2 cut(s)	907, 2359
Fnu4HI	GCNGC	7 cut(s)	264, 1563, 2152, 2202, 2205, 2214, 2389
FokI	GGATG	8 cut(s)	194, 607, 772, 1013, 1730, 1805, 1847, 1900
FriOI	GRGCYC	1 cut(s)	53
Fsp4HI	GCNGC	7 cut(s)	264, 1563, 2152, 2202, 2205, 2214, 2389
FspBI	CTAG	6 cut(s)	425, 476, 1167, 1458, 2394, 2429
GlaI	GCGC	2 cut(s)	320, 2548
GluI	GCNGC	7 cut(s)	264, 1563, 2152, 2202, 2205, 2214, 2389
GsuI	CTGGAG	1 cut(s)	858
HaeIII	GGCC	4 cut(s)	51, 887, 1316, 2488
HapII	CCGG	3 cut(s)	1177, 1702, 2385
HgaI	GACGC	1 cut(s)	1653
HhaI	GCGC	2 cut(s)	321, 2549
Hin1I	GRCGYC	1 cut(s)	2372
Hin6I	GCGC	2 cut(s)	319, 2547
HinP1I	GCGC	2 cut(s)	319, 2547
HincII	GTYRAC	2 cut(s)	1105, 1369
HindII	GTYRAC	2 cut(s)	1105, 1369
HindIII	AAGCTT	5 cut(s)	827, 1657, 1694, 1725, 1947
HpaI	GTTAAC	1 cut(s)	1105
HpaII	CCGG	3 cut(s)	1177, 1702, 2385
HphI	GGTGA	8 cut(s)	10, 311, 316, 1250, 1691, 2036, 2110, 2271
Hpy166II	GTNNAC	3 cut(s)	1105, 1202, 1369
Hpy8I	GTNNAC	3 cut(s)	1105, 1202, 1369
Hpy99I	CGWCG	1 cut(s)	332
HpyCH4III	ACNGT	3 cut(s)	294, 328, 2297
HpyCH4IV	ACGT	3 cut(s)	853, 1204, 2372
HpyF10VI	GCNNNNNNNGC	8 cut(s)	238, 782, 818, 1562, 2160, 2210, 2213, 2222
HpySE526I	ACGT	3 cut(s)	853, 1204, 2372
Hsp92I	GRCGYC	1 cut(s)	2372
HspAI	GCGC	2 cut(s)	319, 2547
Kpn2I	TCCGGA	1 cut(s)	1176
KroI	GCCGGC	1 cut(s)	2384
KroNI	GCCGGC	1 cut(s)	2386
KspAI	GTTAAC	1 cut(s)	1105
Kzo9I	GATC	9 cut(s)	105, 457, 526, 541, 1163, 1173, 1258, 1645, 1936
LguI	GCTCTTC	1 cut(s)	1626
LmnI	GCTCC	5 cut(s)	75, 445, 680, 818, 2148
Lsp1109I	GCAGC	6 cut(s)	1549, 2138, 2191, 2200, 2213, 2400
LweI	GCATC	8 cut(s)	224, 385, 430, 794, 868, 1747, 1878, 2422
MabI	ACCWGGT	1 cut(s)	1378
MaeI	CTAG	6 cut(s)	425, 476, 1167, 1458, 2394, 2429
MaeII	ACGT	3 cut(s)	853, 1204, 2372
MaeIII	GTNAC	7 cut(s)	559, 607, 1238, 2164, 2277, 2297, 2368
MalI	GATC	9 cut(s)	107, 459, 528, 543, 1165, 1175, 1260, 1647, 1938
MboI	GATC	9 cut(s)	105, 457, 526, 541, 1163, 1173, 1258, 1645, 1936
MfeI	CAATTG	2 cut(s)	1392, 2313
MflI	RGATCY	4 cut(s)	457, 1163, 1173, 1936
MhlI	GDGCHC	3 cut(s)	53, 368, 2531
MlsI	TGGCCA	1 cut(s)	2488
MluNI	TGGCCA	1 cut(s)	2488
MlyI	GAGTC	8 cut(s)	1289, 1328, 1354, 2057, 2285, 2354, 2365, 2434
MmeI	TCCRAC	3 cut(s)	1113, 1718, 2123
Mox20I	TGGCCA	1 cut(s)	2488
Mph1103I	ATGCAT	1 cut(s)	1344
MroI	TCCGGA	1 cut(s)	1176
MroNI	GCCGGC	1 cut(s)	2384
MscI	TGGCCA	1 cut(s)	2488
MseI	TTAA	7 cut(s)	60, 831, 1104, 1226, 1533, 1719, 1902
MslI	CAYNNNNRTG	3 cut(s)	180, 371, 381
Msp20I	TGGCCA	1 cut(s)	2488
MspA1I	CMGCKG	2 cut(s)	566, 2204
MspCI	CTTAAG	1 cut(s)	1718
MspI	CCGG	3 cut(s)	1177, 1702, 2385
MspR9I	CCNGG	1 cut(s)	1380
MunI	CAATTG	2 cut(s)	1392, 2313
MvaI	CCWGG	1 cut(s)	1380
MvnI	CGCG	1 cut(s)	2547
MwoI	GCNNNNNNNGC	8 cut(s)	238, 782, 818, 1562, 2160, 2210, 2213, 2222
NaeI	GCCGGC	1 cut(s)	2386
NcoI	CCATGG	1 cut(s)	1527
NdeII	GATC	9 cut(s)	105, 457, 526, 541, 1163, 1173, 1258, 1645, 1936
NgoMIV	GCCGGC	1 cut(s)	2384
NlaIV	GGNNCC	6 cut(s)	51, 71, 717, 1175, 2331, 2543
NmuCI	GTSAC	5 cut(s)	607, 1238, 2277, 2297, 2368
NsiI	ATGCAT	1 cut(s)	1344
NspI	RCATGY	2 cut(s)	359, 556
OliI	CACNNNNGTG	1 cut(s)	371
PagI	TCATGA	1 cut(s)	1207
PciI	ACATGT	2 cut(s)	355, 552
PciSI	GCTCTTC	1 cut(s)	1626
PdiI	GCCGGC	1 cut(s)	2386
PfeI	GAWTC	3 cut(s)	37, 482, 2174
PflFI	GACNNNGTC	1 cut(s)	1040
PinAI	ACCGGT	1 cut(s)	1701
PkrI	GCNGC	7 cut(s)	265, 1564, 2153, 2203, 2206, 2215, 2390
PleI	GAGTC	8 cut(s)	1289, 1328, 1354, 2057, 2284, 2353, 2364, 2433
PpsI	GAGTC	8 cut(s)	1289, 1328, 1354, 2057, 2284, 2353, 2364, 2433
Ppu21I	YACGTR	1 cut(s)	854
PscI	ACATGT	2 cut(s)	355, 552
PsiI	TTATAA	1 cut(s)	1809
Psp6I	CCWGG	1 cut(s)	1378
PspGI	CCWGG	1 cut(s)	1378
PspN4I	GGNNCC	6 cut(s)	51, 71, 717, 1175, 2331, 2543
PspOMI	GGGCCC	1 cut(s)	49
PspPI	GGNCC	3 cut(s)	49, 50, 1704
PstI	CTGCAG	1 cut(s)	2209
PstNI	CAGNNNCTG	1 cut(s)	2213
PsuI	RGATCY	4 cut(s)	457, 1163, 1173, 1936
PsyI	GACNNNGTC	1 cut(s)	1040
PvuII	CAGCTG	2 cut(s)	566, 2204
RsaI	GTAC	3 cut(s)	868, 1845, 1982
RsaNI	GTAC	3 cut(s)	867, 1844, 1981
RseI	CAYNNNNRTG	3 cut(s)	180, 371, 381
SapI	GCTCTTC	1 cut(s)	1626
SaqAI	TTAA	7 cut(s)	60, 831, 1104, 1226, 1533, 1719, 1902
SatI	GCNGC	7 cut(s)	264, 1563, 2152, 2202, 2205, 2214, 2389
Sau3AI	GATC	9 cut(s)	105, 457, 526, 541, 1163, 1173, 1258, 1645, 1936
Sau96I	GGNCC	3 cut(s)	49, 50, 1704
ScaI	AGTACT	1 cut(s)	1982
SchI	GAGTC	8 cut(s)	1289, 1328, 1354, 2057, 2285, 2354, 2365, 2434
ScrFI	CCNGG	1 cut(s)	1380
SduI	GDGCHC	3 cut(s)	53, 368, 2531
SexAI	ACCWGGT	1 cut(s)	1378
SfaNI	GCATC	8 cut(s)	224, 385, 430, 794, 868, 1747, 1878, 2422
SfcI	CTRYAG	3 cut(s)	1143, 1557, 2205
SinI	GGWCC	1 cut(s)	1704
SmiMI	CAYNNNNRTG	3 cut(s)	180, 371, 381
SmlI	CTYRAG	9 cut(s)	44, 79, 192, 453, 1076, 1718, 1976, 1984, 2319
SmoI	CTYRAG	9 cut(s)	44, 79, 192, 453, 1076, 1718, 1976, 1984, 2319
SsiI	CCGC	5 cut(s)	73, 264, 443, 2382, 2545
SspMI	CTAG	6 cut(s)	425, 476, 1167, 1458, 2394, 2429
StyD4I	CCNGG	1 cut(s)	1378
StyI	CCWWGG	8 cut(s)	424, 882, 1157, 1216, 1234, 1527, 2325, 2393
TaaI	ACNGT	3 cut(s)	294, 328, 2297
TaiI	ACGT	3 cut(s)	856, 1207, 2375
TaqI	TCGA	2 cut(s)	99, 2471
TatI	WGTACW	2 cut(s)	1843, 1980
TauI	GCSGC	1 cut(s)	266
TfiI	GAWTC	3 cut(s)	37, 482, 2174
Tru1I	TTAA	7 cut(s)	60, 831, 1104, 1226, 1533, 1719, 1902
Tru9I	TTAA	7 cut(s)	60, 831, 1104, 1226, 1533, 1719, 1902
TscAI	CASTG	2 cut(s)	819, 1279
TseFI	GTSAC	5 cut(s)	607, 1238, 2277, 2297, 2368
TseI	GCWGC	6 cut(s)	1562, 2151, 2201, 2204, 2213, 2388
Tsp45I	GTSAC	5 cut(s)	607, 1238, 2277, 2297, 2368
TspGWI	ACGGA	1 cut(s)	1736
TspRI	CASTG	2 cut(s)	819, 1279
Tth111I	GACNNNGTC	1 cut(s)	1040
Vha464I	CTTAAG	1 cut(s)	1718
VpaK11BI	GGWCC	1 cut(s)	1704
XagI	CCTNNNNNAGG	1 cut(s)	1931
XapI	RAATTY	4 cut(s)	24, 414, 2407, 2463
XbaI	TCTAGA	1 cut(s)	2428
XceI	RCATGY	2 cut(s)	359, 556
XmaJI	CCTAGG	2 cut(s)	424, 2393
XspI	CTAG	6 cut(s)	425, 476, 1167, 1458, 2394, 2429
ZraI	GACGTC	1 cut(s)	2373
ZrmI	AGTACT	1 cut(s)	1982
Zsp2I	ATGCAT	1 cut(s)	1344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.