gag-polypeptide of LTR copia-type
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_5g29991 |
| malus_domestica | MD00G1044200.v1.1 |
| prunus_persica | Prupe.2G062600_v2.0.a1 Prupe.2G064700_v2.0.a1 Prupe.6G167800_v2.0.a1 |
| pyrus_communis | pycom13g29530 pycom17g02500 pycom39g00040 pycom976g00080 |
| rosa_chinensis | RchiOBHm_Chr1g0376911 RchiOBHm_Chr1g0379561 RchiOBHm_Chr2g0165661 RchiOBHm_Chr2g0176521 |
| rosa_multiflora | Rmu_sc0000070.1_g000011 Rmu_sc0000555.1_g000020 Rmu_sc0001291.1_g000051 Rmu_sc0001306.1_g000003 Rmu_sc0005142.1_g000016 Rmu_ssc0000389.1_g000014 |
| rosa_roxburghii | Rroxscaffold_2G00096870 Rroxscaffold_5G00384810 Rroxscaffold_6G00394930 |
| rosa_samantha | Rh1CG138000 Rh1CG192400 Rh7BG220700 |
| rosa_wichuraiana | Rw0G002230 Rw0G012080 Rw1G007200 Rw1G008660 Rw1G011890 Rw2G018430 Rw3G008190 Rw3G020340 Rw3G024460 Rw4G000210 Rw5G007300 Rw5G015820 Rw5G032410 Rw5G048130 Rw5G049610 Rw7G025770 Rw7G028470 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 98 |
| AclWI | GGATC | 1 cut(s) | 33 |
| AcoI | YGGCCR | 1 cut(s) | 99 |
| AgsI | TTSAA | 2 cut(s) | 286, 300 |
| AluBI | AGCT | 3 cut(s) | 65, 269, 329 |
| AluI | AGCT | 3 cut(s) | 65, 269, 329 |
| AlwI | GGATC | 1 cut(s) | 33 |
| AoxI | GGCC | 1 cut(s) | 99 |
| AspS9I | GGNCC | 1 cut(s) | 308 |
| AvaII | GGWCC | 1 cut(s) | 308 |
| AxyI | CCTNAGG | 1 cut(s) | 168 |
| BaeGI | GKGCMC | 1 cut(s) | 249 |
| BbsI | GAAGAC | 1 cut(s) | 288 |
| BccI | CCATC | 1 cut(s) | 236 |
| BfaI | CTAG | 1 cut(s) | 312 |
| BisI | GCNGC | 1 cut(s) | 99 |
| BlsI | GCNGC | 1 cut(s) | 100 |
| Bme18I | GGWCC | 1 cut(s) | 308 |
| BmgT120I | GGNCC | 1 cut(s) | 308 |
| BmiI | GGNNCC | 1 cut(s) | 210 |
| BmsI | GCATC | 1 cut(s) | 287 |
| BpiI | GAAGAC | 1 cut(s) | 288 |
| Bse1I | ACTGG | 2 cut(s) | 123, 254 |
| Bse21I | CCTNAGG | 1 cut(s) | 168 |
| BseGI | GGATG | 2 cut(s) | 119, 278 |
| BseMII | CTCAG | 1 cut(s) | 57 |
| BseNI | ACTGG | 2 cut(s) | 123, 254 |
| BseSI | GKGCMC | 1 cut(s) | 249 |
| BshFI | GGCC | 1 cut(s) | 101 |
| BsnI | GGCC | 1 cut(s) | 101 |
| Bsp1286I | GDGCHC | 1 cut(s) | 249 |
| Bsp143I | GATC | 2 cut(s) | 25, 40 |
| BspACI | CCGC | 1 cut(s) | 98 |
| BspANI | GGCC | 1 cut(s) | 101 |
| BspCNI | CTCAG | 1 cut(s) | 58 |
| BspLI | GGNNCC | 1 cut(s) | 210 |
| BspPI | GGATC | 1 cut(s) | 33 |
| BsrI | ACTGG | 2 cut(s) | 123, 254 |
| BssMI | GATC | 2 cut(s) | 25, 40 |
| Bst6I | CTCTTC | 1 cut(s) | 248 |
| BstDEI | CTNAG | 2 cut(s) | 66, 168 |
| BstF5I | GGATG | 2 cut(s) | 119, 278 |
| BstKTI | GATC | 2 cut(s) | 28, 43 |
| BstMBI | GATC | 2 cut(s) | 25, 40 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 107, 275 |
| BstSLI | GKGCMC | 1 cut(s) | 249 |
| BstV2I | GAAGAC | 1 cut(s) | 288 |
| Bsu36I | CCTNAGG | 1 cut(s) | 168 |
| BsuRI | GGCC | 1 cut(s) | 101 |
| BtsCI | GGATG | 2 cut(s) | 119, 278 |
| BtsIMutI | CAGTG | 1 cut(s) | 247 |
| Cfr13I | GGNCC | 1 cut(s) | 308 |
| CviJI | RGCY | 5 cut(s) | 65, 101, 166, 269, 329 |
| CviKI_1 | RGCY | 5 cut(s) | 65, 101, 166, 269, 329 |
| DdeI | CTNAG | 2 cut(s) | 66, 168 |
| DpnI | GATC | 2 cut(s) | 27, 42 |
| DpnII | GATC | 2 cut(s) | 25, 40 |
| EaeI | YGGCCR | 1 cut(s) | 99 |
| Eam1104I | CTCTTC | 1 cut(s) | 248 |
| EarI | CTCTTC | 1 cut(s) | 248 |
| Eco47I | GGWCC | 1 cut(s) | 308 |
| Eco81I | CCTNAGG | 1 cut(s) | 168 |
| EcoO109I | RGGNCCY | 1 cut(s) | 308 |
| FaiI | YATR | 4 cut(s) | 9, 14, 30, 53 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 258, 290 |
| Fnu4HI | GCNGC | 1 cut(s) | 99 |
| FokI | GGATG | 2 cut(s) | 106, 265 |
| Fsp4HI | GCNGC | 1 cut(s) | 99 |
| FspBI | CTAG | 1 cut(s) | 312 |
| GluI | GCNGC | 1 cut(s) | 99 |
| HaeIII | GGCC | 1 cut(s) | 101 |
| HindIII | AAGCTT | 2 cut(s) | 267, 327 |
| Hpy188I | TCNGA | 1 cut(s) | 40 |
| Hpy188III | TCNNGA | 1 cut(s) | 79 |
| HpyAV | CCTTC | 2 cut(s) | 190, 299 |
| HpyCH4V | TGCA | 4 cut(s) | 16, 234, 264, 278 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 107, 275 |
| HpyF3I | CTNAG | 2 cut(s) | 66, 168 |
| Kzo9I | GATC | 2 cut(s) | 25, 40 |
| LmnI | GCTCC | 2 cut(s) | 173, 318 |
| LpnPI | CCDG | 3 cut(s) | 41, 136, 235 |
| LweI | GCATC | 1 cut(s) | 287 |
| MaeI | CTAG | 1 cut(s) | 312 |
| MaeIII | GTNAC | 1 cut(s) | 58 |
| MalI | GATC | 2 cut(s) | 27, 42 |
| MboI | GATC | 2 cut(s) | 25, 40 |
| MhlI | GDGCHC | 1 cut(s) | 249 |
| MluCI | AATT | 1 cut(s) | 259 |
| MnlI | CCTC | 1 cut(s) | 249 |
| MseI | TTAA | 1 cut(s) | 331 |
| MspA1I | CMGCKG | 1 cut(s) | 65 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 107, 275 |
| NdeII | GATC | 2 cut(s) | 25, 40 |
| NlaIV | GGNNCC | 1 cut(s) | 210 |
| PkrI | GCNGC | 1 cut(s) | 100 |
| PpuMI | RGGWCCY | 1 cut(s) | 308 |
| Psp5II | RGGWCCY | 1 cut(s) | 308 |
| PspN4I | GGNNCC | 1 cut(s) | 210 |
| PspPI | GGNCC | 1 cut(s) | 308 |
| PspPPI | RGGWCCY | 1 cut(s) | 308 |
| PvuII | CAGCTG | 1 cut(s) | 65 |
| SaqAI | TTAA | 1 cut(s) | 331 |
| SatI | GCNGC | 1 cut(s) | 99 |
| Sau3AI | GATC | 2 cut(s) | 25, 40 |
| Sau96I | GGNCC | 1 cut(s) | 308 |
| SduI | GDGCHC | 1 cut(s) | 249 |
| SetI | ASST | 5 cut(s) | 67, 220, 271, 313, 331 |
| SfaNI | GCATC | 1 cut(s) | 287 |
| SgeI | CNNG | 9 cut(s) | 68, 91, 135, 167, 262, 287, 295, 304, 324 |
| SinI | GGWCC | 1 cut(s) | 308 |
| Sse9I | AATT | 1 cut(s) | 259 |
| SsiI | CCGC | 1 cut(s) | 98 |
| SspMI | CTAG | 1 cut(s) | 312 |
| TasI | AATT | 1 cut(s) | 259 |
| TauI | GCSGC | 1 cut(s) | 101 |
| Tru1I | TTAA | 1 cut(s) | 331 |
| Tru9I | TTAA | 1 cut(s) | 331 |
| TscAI | CASTG | 1 cut(s) | 254 |
| TspDTI | ATGAA | 2 cut(s) | 17, 108 |
| TspGWI | ACGGA | 1 cut(s) | 317 |
| TspRI | CASTG | 1 cut(s) | 254 |
| VpaK11BI | GGWCC | 1 cut(s) | 308 |
| XspI | CTAG | 1 cut(s) | 312 |