Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0002402

Physical Location & Seq

Genomic Coordinates Reverse (-)

17136989 .. 17137693

Gene Structure 705 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G167800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGTCTGGATCTGCATTCGCCAAACTCCTAGACAAACATTGTCTAGAAGGCCATAACTTTCTAACATGGTACCCCAATCTCAAGATATTCATGACTATCGAGAAGATTATGTACGTACTAGAGAAAGCTCCTGACATAGAGCCCCCCAGTGAAGATGCTTCTCAGGAAGTACGTGCTGAGTATGACAAGCACGTGGATGATGACTGTCAAGCCATGTGCCACATTCTGGCTTCCATGAATGAGGAGCTCCAGAAATCGAATGAGCATATGATGCATGCTGCTGACATAATATCCCATCTCCAAGAGCTTTATAGAGAGGGCACATGCAACAGACGCTTCAGTGCTATGATAGGACTCATTGAGCAGCTGGAAAGTCTTAACAGTCCACTGGACCGCAACTTGACCACCAACATCTTCCTTGCGTCCCTTTCTGATTCATTCTCCCAGTTTGTTGTGAACTACAACATGGGGAAGATGGAGAACACTCTCTCAGAGCTGCAGAACATGTGTGTGATTGCTGAGAAGACATTCAAGATACAAGGAGGGAATGAGACCATTGTGGTTTTTGAGAAGTCAACTTCTTCTGCTAATCCCGGTAATAAGGGTAAAGGCAAATTCAATGCCAGCAAGAAGAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Retrotran_gag_2 zf-CCHC

Protein Analysis

214

Amino Acids

24.08

Weight (kDa)

5.67

Isoelectric Point (pI)

47.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002402)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g29991
malus_domestica	MD00G1044200.v1.1
prunus_persica	Prupe.2G062600_v2.0.a1 Prupe.2G064700_v2.0.a1 Prupe.6G167800_v2.0.a1
pyrus_communis	pycom13g29530 pycom17g02500 pycom39g00040 pycom976g00080
rosa_chinensis	RchiOBHm_Chr1g0376911 RchiOBHm_Chr1g0379561 RchiOBHm_Chr2g0165661 RchiOBHm_Chr2g0176521
rosa_multiflora	Rmu_sc0000070.1_g000011 Rmu_sc0000555.1_g000020 Rmu_sc0001291.1_g000051 Rmu_sc0001306.1_g000003 Rmu_sc0005142.1_g000016 Rmu_ssc0000389.1_g000014
rosa_roxburghii	Rroxscaffold_2G00096870 Rroxscaffold_5G00384810 Rroxscaffold_6G00394930
rosa_samantha	Rh1CG138000 Rh1CG192400 Rh7BG220700
rosa_wichuraiana	Rw0G002230 Rw0G012080 Rw1G007200 Rw1G008660 Rw1G011890 Rw2G018430 Rw3G008190 Rw3G020340 Rw3G024460 Rw4G000210 Rw5G007300 Rw5G015820 Rw5G032410 Rw5G048130 Rw5G049610 Rw7G025770 Rw7G028470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	69
AccB1I	GGYRCC	1 cut(s)	69
AccB7I	CCANNNNNTGG	1 cut(s)	226
AciI	CCGC	1 cut(s)	394
AclWI	GGATC	1 cut(s)	16
AcsI	RAATTY	1 cut(s)	614
AcuI	CTGAAG	1 cut(s)	322
AcvI	CACGTG	1 cut(s)	193
AfaI	GTAC	4 cut(s)	71, 113, 117, 171
AfiI	CCNNNNNNNGG	1 cut(s)	226
AflIII	ACRYGT	1 cut(s)	504
AgsI	TTSAA	2 cut(s)	532, 619
AluBI	AGCT	5 cut(s)	128, 247, 307, 367, 496
AluI	AGCT	5 cut(s)	128, 247, 307, 367, 496
Alw21I	GWGCWC	1 cut(s)	249
Alw26I	GTCTC	1 cut(s)	545
AlwI	GGATC	1 cut(s)	16
AoxI	GGCC	1 cut(s)	49
ApeKI	GCWGC	3 cut(s)	278, 364, 496
ApoI	RAATTY	1 cut(s)	614
Asp700I	GAANNNNTTC	1 cut(s)	527
Asp718I	GGTACC	1 cut(s)	69
AspS9I	GGNCC	1 cut(s)	391
AsuC2I	CCSGG	1 cut(s)	594
AvaII	GGWCC	1 cut(s)	391
BaeGI	GKGCMC	1 cut(s)	323
BanI	GGYRCC	1 cut(s)	69
BanII	GRGCYC	2 cut(s)	144, 249
BarI	GAAGNNNNNNTAC	2 cut(s)	95, 127
BbrPI	CACGTG	1 cut(s)	193
BbsI	GAAGAC	1 cut(s)	530
Bbv12I	GWGCWC	1 cut(s)	249
BbvI	GCAGC	3 cut(s)	265, 376, 483
BccI	CCATC	2 cut(s)	303, 469
BcnI	CCSGG	1 cut(s)	594
BcoDI	GTCTC	1 cut(s)	545
BfaI	CTAG	3 cut(s)	29, 44, 119
BfmI	CTRYAG	1 cut(s)	497
BisI	GCNGC	3 cut(s)	279, 365, 497
BlsI	GCNGC	3 cut(s)	280, 366, 498
Bme1390I	CCNGG	1 cut(s)	594
Bme18I	GGWCC	1 cut(s)	391
BmgT120I	GGNCC	1 cut(s)	391
BmiI	GGNNCC	1 cut(s)	71
BmrFI	CCNGG	1 cut(s)	594
BmrI	ACTGGG	2 cut(s)	141, 439
BmsI	GCATC	2 cut(s)	145, 261
BmuI	ACTGGG	2 cut(s)	141, 439
BpiI	GAAGAC	1 cut(s)	530
BpmI	CTGGAG	1 cut(s)	233
BpuEI	CTTGAG	1 cut(s)	65
BpuMI	CCSGG	1 cut(s)	594
BsaAI	YACGTR	3 cut(s)	115, 173, 193
BsaI	GGTCTC	1 cut(s)	545
Bsc4I	CCNNNNNNNGG	1 cut(s)	226
Bse1I	ACTGG	3 cut(s)	147, 393, 445
BseGI	GGATG	1 cut(s)	202
BseLI	CCNNNNNNNGG	1 cut(s)	226
BseMII	CTCAG	4 cut(s)	168, 176, 504, 510
BseNI	ACTGG	3 cut(s)	147, 393, 445
BseRI	GAGGAG	1 cut(s)	257
BseSI	GKGCMC	1 cut(s)	323
BseXI	GCAGC	3 cut(s)	265, 376, 483
BshFI	GGCC	1 cut(s)	51
BshNI	GGYRCC	1 cut(s)	69
BsiHKAI	GWGCWC	1 cut(s)	249
BsiSI	CCGG	1 cut(s)	594
BslFI	GGGAC	1 cut(s)	409
BslI	CCNNNNNNNGG	1 cut(s)	226
BsmAI	GTCTC	1 cut(s)	545
BsmFI	GGGAC	1 cut(s)	409
BsmI	GAATGC	1 cut(s)	14
BsnI	GGCC	1 cut(s)	51
Bso31I	GGTCTC	1 cut(s)	545
Bsp1286I	GDGCHC	3 cut(s)	144, 249, 323
Bsp143I	GATC	1 cut(s)	8
BspACI	CCGC	1 cut(s)	394
BspANI	GGCC	1 cut(s)	51
BspCNI	CTCAG	4 cut(s)	169, 175, 503, 511
BspHI	TCATGA	1 cut(s)	90
BspLI	GGNNCC	1 cut(s)	71
BspMAI	CTGCAG	1 cut(s)	501
BspPI	GGATC	1 cut(s)	16
BspT107I	GGYRCC	1 cut(s)	69
BspTNI	GGTCTC	1 cut(s)	545
BsrI	ACTGG	3 cut(s)	147, 393, 445
BssMI	GATC	1 cut(s)	8
Bst4CI	ACNGT	2 cut(s)	206, 383
BstAPI	GCANNNNNTGC	1 cut(s)	271
BstBAI	YACGTR	3 cut(s)	115, 173, 193
BstC8I	GCNNGC	2 cut(s)	276, 625
BstDEI	CTNAG	4 cut(s)	162, 177, 490, 519
BstF5I	GGATG	1 cut(s)	202
BstKTI	GATC	1 cut(s)	11
BstMAI	GTCTC	1 cut(s)	545
BstMBI	GATC	1 cut(s)	8
BstMWI	GCNNNNNNNGC	2 cut(s)	271, 333
BstNSI	RCATGY	3 cut(s)	278, 327, 508
BstSCI	CCNGG	1 cut(s)	592
BstSFI	CTRYAG	1 cut(s)	497
BstSLI	GKGCMC	1 cut(s)	323
BstSNI	TACGTA	1 cut(s)	115
BstV1I	GCAGC	3 cut(s)	265, 376, 483
BstV2I	GAAGAC	1 cut(s)	530
BstX2I	RGATCY	1 cut(s)	8
BstYI	RGATCY	1 cut(s)	8
BsuRI	GGCC	1 cut(s)	51
BtsCI	GGATG	1 cut(s)	202
BtsIMutI	CAGTG	3 cut(s)	154, 346, 386
Cac8I	GCNNGC	2 cut(s)	276, 625
CciI	TCATGA	1 cut(s)	90
Cfr13I	GGNCC	1 cut(s)	391
CseI	GACGC	2 cut(s)	342, 411
Csp6I	GTAC	4 cut(s)	70, 112, 116, 170
CviAII	CATG	8 cut(s)	66, 91, 214, 235, 275, 324, 466, 505
CviJI	RGCY	9 cut(s)	51, 128, 142, 212, 230, 247, 307, 367, 496
CviKI_1	RGCY	9 cut(s)	51, 128, 142, 212, 230, 247, 307, 367, 496
CviQI	GTAC	4 cut(s)	70, 112, 116, 170
DdeI	CTNAG	4 cut(s)	162, 177, 490, 519
DpnI	GATC	1 cut(s)	10
DpnII	GATC	1 cut(s)	8
Ecl136II	GAGCTC	1 cut(s)	247
Eco105I	TACGTA	1 cut(s)	115
Eco24I	GRGCYC	2 cut(s)	144, 249
Eco31I	GGTCTC	1 cut(s)	545
Eco47I	GGWCC	1 cut(s)	391
Eco53kI	GAGCTC	1 cut(s)	247
Eco57I	CTGAAG	1 cut(s)	322
Eco72I	CACGTG	1 cut(s)	193
EcoICRI	GAGCTC	1 cut(s)	247
EcoT22I	ATGCAT	1 cut(s)	276
EcoT38I	GRGCYC	2 cut(s)	144, 249
FaeI	CATG	8 cut(s)	69, 94, 217, 238, 278, 327, 469, 508
FaqI	GGGAC	1 cut(s)	409
FatI	CATG	8 cut(s)	65, 90, 213, 234, 274, 323, 465, 504
FauNDI	CATATG	1 cut(s)	267
Fnu4HI	GCNGC	3 cut(s)	279, 365, 497
FokI	GGATG	1 cut(s)	209
FriOI	GRGCYC	2 cut(s)	144, 249
Fsp4HI	GCNGC	3 cut(s)	279, 365, 497
FspBI	CTAG	3 cut(s)	29, 44, 119
GluI	GCNGC	3 cut(s)	279, 365, 497
GsuI	CTGGAG	1 cut(s)	233
HaeIII	GGCC	1 cut(s)	51
HapII	CCGG	1 cut(s)	594
HgaI	GACGC	2 cut(s)	342, 411
Hin1II	CATG	8 cut(s)	69, 94, 217, 238, 278, 327, 469, 508
HincII	GTYRAC	1 cut(s)	576
HindII	GTYRAC	1 cut(s)	576
HinfI	GANTC	2 cut(s)	354, 434
HpaII	CCGG	1 cut(s)	594
Hpy166II	GTNNAC	3 cut(s)	386, 457, 576
Hpy188I	TCNGA	2 cut(s)	433, 493
Hpy188III	TCNNGA	9 cut(s)	6, 44, 82, 91, 100, 131, 164, 250, 532
Hpy8I	GTNNAC	3 cut(s)	386, 457, 576
HpyAV	CCTTC	1 cut(s)	41
HpyCH4III	ACNGT	2 cut(s)	206, 383
HpyCH4IV	ACGT	3 cut(s)	114, 172, 192
HpyCH4V	TGCA	4 cut(s)	14, 274, 327, 499
HpyF10VI	GCNNNNNNNGC	2 cut(s)	271, 333
HpyF3I	CTNAG	4 cut(s)	162, 177, 490, 519
HpySE526I	ACGT	3 cut(s)	114, 172, 192
Hsp92II	CATG	8 cut(s)	69, 94, 217, 238, 278, 327, 469, 508
KpnI	GGTACC	1 cut(s)	73
Kzo9I	GATC	1 cut(s)	8
LmnI	GCTCC	3 cut(s)	133, 244, 252
Lsp1109I	GCAGC	3 cut(s)	265, 376, 483
LweI	GCATC	2 cut(s)	145, 261
MaeI	CTAG	3 cut(s)	29, 44, 119
MaeII	ACGT	3 cut(s)	114, 172, 192
MalI	GATC	1 cut(s)	10
MboI	GATC	1 cut(s)	8
MboII	GAAGA	6 cut(s)	115, 164, 406, 484, 535, 573
MflI	RGATCY	1 cut(s)	8
MhlI	GDGCHC	3 cut(s)	144, 249, 323
MluCI	AATT	1 cut(s)	614
MlyI	GAGTC	1 cut(s)	348
MnlI	CCTC	3 cut(s)	235, 310, 536
Mph1103I	ATGCAT	1 cut(s)	276
MroXI	GAANNNNTTC	1 cut(s)	527
MseI	TTAA	1 cut(s)	378
MslI	CAYNNNNRTG	2 cut(s)	195, 509
MspA1I	CMGCKG	1 cut(s)	367
MspI	CCGG	1 cut(s)	594
MspR9I	CCNGG	1 cut(s)	594
Mva1269I	GAATGC	1 cut(s)	14
MwoI	GCNNNNNNNGC	2 cut(s)	271, 333
NciI	CCSGG	1 cut(s)	594
NdeI	CATATG	1 cut(s)	267
NdeII	GATC	1 cut(s)	8
NlaIII	CATG	8 cut(s)	69, 94, 217, 238, 278, 327, 469, 508
NlaIV	GGNNCC	1 cut(s)	71
NsiI	ATGCAT	1 cut(s)	276
NspI	RCATGY	3 cut(s)	278, 327, 508
PaeI	GCATGC	1 cut(s)	278
PagI	TCATGA	1 cut(s)	90
PciI	ACATGT	1 cut(s)	504
PctI	GAATGC	1 cut(s)	14
PdmI	GAANNNNTTC	1 cut(s)	527
PfeI	GAWTC	1 cut(s)	434
PflMI	CCANNNNNTGG	1 cut(s)	226
PkrI	GCNGC	3 cut(s)	280, 366, 498
PleI	GAGTC	1 cut(s)	348
PmaCI	CACGTG	1 cut(s)	193
PmlI	CACGTG	1 cut(s)	193
PpsI	GAGTC	1 cut(s)	348
Ppu21I	YACGTR	3 cut(s)	115, 173, 193
PscI	ACATGT	1 cut(s)	504
Psp124BI	GAGCTC	1 cut(s)	249
PspCI	CACGTG	1 cut(s)	193
PspN4I	GGNNCC	1 cut(s)	71
PspPI	GGNCC	1 cut(s)	391
PstI	CTGCAG	1 cut(s)	501
PsuI	RGATCY	1 cut(s)	8
PvuII	CAGCTG	1 cut(s)	367
RsaI	GTAC	4 cut(s)	71, 113, 117, 171
RsaNI	GTAC	4 cut(s)	70, 112, 116, 170
RseI	CAYNNNNRTG	2 cut(s)	195, 509
SacI	GAGCTC	1 cut(s)	249
SaqAI	TTAA	1 cut(s)	378
SatI	GCNGC	3 cut(s)	279, 365, 497
Sau3AI	GATC	1 cut(s)	8
Sau96I	GGNCC	1 cut(s)	391
SchI	GAGTC	1 cut(s)	348
ScrFI	CCNGG	1 cut(s)	594
SduI	GDGCHC	3 cut(s)	144, 249, 323
SetI	ASST	8 cut(s)	117, 130, 175, 195, 249, 309, 369, 498
SfaNI	GCATC	2 cut(s)	145, 261
SfcI	CTRYAG	1 cut(s)	497
SinI	GGWCC	1 cut(s)	391
SmiMI	CAYNNNNRTG	2 cut(s)	195, 509
SmlI	CTYRAG	1 cut(s)	80
SmoI	CTYRAG	1 cut(s)	80
SnaBI	TACGTA	1 cut(s)	115
SphI	GCATGC	1 cut(s)	278
Sse9I	AATT	1 cut(s)	614
SsiI	CCGC	1 cut(s)	394
SspMI	CTAG	3 cut(s)	29, 44, 119
SstI	GAGCTC	1 cut(s)	249
StyD4I	CCNGG	1 cut(s)	592
TaaI	ACNGT	2 cut(s)	206, 383
TaiI	ACGT	3 cut(s)	117, 175, 195
TaqI	TCGA	2 cut(s)	99, 257
TasI	AATT	1 cut(s)	614
TfiI	GAWTC	1 cut(s)	434
Tru1I	TTAA	1 cut(s)	378
Tru9I	TTAA	1 cut(s)	378
TscAI	CASTG	3 cut(s)	154, 346, 393
TseI	GCWGC	3 cut(s)	278, 364, 496
TspDTI	ATGAA	3 cut(s)	79, 251, 426
TspRI	CASTG	3 cut(s)	154, 346, 393
Van91I	CCANNNNNTGG	1 cut(s)	226
VpaK11BI	GGWCC	1 cut(s)	391
XapI	RAATTY	1 cut(s)	614
XbaI	TCTAGA	1 cut(s)	43
XceI	RCATGY	3 cut(s)	278, 327, 508
XmnI	GAANNNNTTC	1 cut(s)	527
XspI	CTAG	3 cut(s)	29, 44, 119
Zsp2I	ATGCAT	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.