Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002402

Physical Location & Seq

Genomic Coordinates Reverse (-)

64029117 .. 64029935

Gene Structure 819 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00384810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGATAGCGCCAGTTCTATATTACTCCATCTCACTGAATTGTTTGGTGAAAGGAATAGAAATGTGCGCTTCACAGTAGTCAATGAGCTTGTCAAGACAAAACATGTGAGGGGTGCACCTGTGCATCAACATGGTCTAAAAATGATAGGCCTTATTGAGCAAATTCAAGACCTTGGATTTGCACTTGATGCGGAGCTAGCTCAAGATCTTCTTCTAACCTCCCTAGATGATGCATTCTCTCAGTTCATAATGAACTATAATATGCAACAAATGAATCATACTCTTTCTGATCTTCTCAATATGCCGGTAACAGTGAGAAGCAAATCAAGAAAGAGAGTGGGAGTGTGGCCTTTGTCGCTTCTTCTTCATCCGGTAAGTCCAAAGGTAAAGGCAAAGGGAAGAAGAAACAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Retrotran_gag_2 zf-CCHC

Protein Analysis

137

Amino Acids

15.52

Weight (kDa)

9.99

Isoelectric Point (pI)

47.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002402)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g29991
malus_domestica	MD00G1044200.v1.1
prunus_persica	Prupe.2G062600_v2.0.a1 Prupe.2G064700_v2.0.a1 Prupe.6G167800_v2.0.a1
pyrus_communis	pycom13g29530 pycom17g02500 pycom39g00040 pycom976g00080
rosa_chinensis	RchiOBHm_Chr1g0376911 RchiOBHm_Chr1g0379561 RchiOBHm_Chr2g0165661 RchiOBHm_Chr2g0176521
rosa_multiflora	Rmu_sc0000070.1_g000011 Rmu_sc0000555.1_g000020 Rmu_sc0001291.1_g000051 Rmu_sc0001306.1_g000003 Rmu_sc0005142.1_g000016 Rmu_ssc0000389.1_g000014
rosa_roxburghii	Rroxscaffold_2G00096870 Rroxscaffold_5G00384810 Rroxscaffold_6G00394930
rosa_samantha	Rh1CG138000 Rh1CG192400 Rh7BG220700
rosa_wichuraiana	Rw0G002230 Rw0G012080 Rw1G007200 Rw1G008660 Rw1G011890 Rw2G018430 Rw3G008190 Rw3G020340 Rw3G024460 Rw4G000210 Rw5G007300 Rw5G015820 Rw5G032410 Rw5G048130 Rw5G049610 Rw7G025770 Rw7G028470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	191
AcsI	RAATTY	1 cut(s)	162
AflIII	ACRYGT	1 cut(s)	103
AgsI	TTSAA	1 cut(s)	167
AluBI	AGCT	3 cut(s)	88, 196, 200
AluI	AGCT	3 cut(s)	88, 196, 200
Alw21I	GWGCWC	1 cut(s)	118
Alw44I	GTGCAC	1 cut(s)	114
AoxI	GGCC	2 cut(s)	148, 347
ApaLI	GTGCAC	1 cut(s)	114
ApoI	RAATTY	1 cut(s)	162
ArsI	GACNNNNNNTTYG	2 cut(s)	161, 193
AspLEI	GCGC	2 cut(s)	11, 69
AsuHPI	GGTGA	1 cut(s)	59
AsuNHI	GCTAGC	1 cut(s)	196
BaeGI	GKGCMC	1 cut(s)	118
Bbv12I	GWGCWC	1 cut(s)	118
BccI	CCATC	1 cut(s)	36
BfaI	CTAG	2 cut(s)	197, 224
BfoI	RGCGCY	1 cut(s)	12
BglII	AGATCT	1 cut(s)	205
BmsI	GCATC	3 cut(s)	133, 178, 220
BmtI	GCTAGC	1 cut(s)	200
BpuEI	CTTGAG	1 cut(s)	186
BsaJI	CCNNGG	1 cut(s)	172
BsaWI	WCCGGW	1 cut(s)	370
Bse118I	RCCGGY	1 cut(s)	304
Bse1I	ACTGG	1 cut(s)	12
BseDI	CCNNGG	1 cut(s)	172
BseGI	GGATG	1 cut(s)	367
BseMII	CTCAG	1 cut(s)	254
BseNI	ACTGG	1 cut(s)	12
BseSI	GKGCMC	1 cut(s)	118
BshFI	GGCC	2 cut(s)	150, 349
BsiHKAI	GWGCWC	1 cut(s)	118
BsiSI	CCGG	2 cut(s)	305, 371
BsmI	GAATGC	1 cut(s)	233
BsnI	GGCC	2 cut(s)	150, 349
Bsp1286I	GDGCHC	1 cut(s)	118
Bsp143I	GATC	2 cut(s)	205, 289
BspACI	CCGC	1 cut(s)	191
BspANI	GGCC	2 cut(s)	150, 349
BspCNI	CTCAG	1 cut(s)	253
BspOI	GCTAGC	1 cut(s)	200
BsrFI	RCCGGY	1 cut(s)	304
BsrI	ACTGG	1 cut(s)	12
BssAI	RCCGGY	1 cut(s)	304
BssECI	CCNNGG	1 cut(s)	172
BssMI	GATC	2 cut(s)	205, 289
BssT1I	CCWWGG	1 cut(s)	172
Bst4CI	ACNGT	2 cut(s)	76, 313
BstAPI	GCANNNNNTGC	1 cut(s)	188
BstC8I	GCNNGC	1 cut(s)	198
BstDEI	CTNAG	1 cut(s)	240
BstF5I	GGATG	1 cut(s)	367
BstH2I	RGCGCY	1 cut(s)	12
BstHHI	GCGC	2 cut(s)	11, 69
BstKTI	GATC	2 cut(s)	208, 292
BstMBI	GATC	2 cut(s)	205, 289
BstMWI	GCNNNNNNNGC	3 cut(s)	188, 197, 355
BstNSI	RCATGY	1 cut(s)	107
BstSLI	GKGCMC	1 cut(s)	118
BstX2I	RGATCY	1 cut(s)	205
BstYI	RGATCY	1 cut(s)	205
BsuRI	GGCC	2 cut(s)	150, 349
BtsCI	GGATG	1 cut(s)	367
BtsIMutI	CAGTG	2 cut(s)	33, 318
Cac8I	GCNNGC	1 cut(s)	198
CfoI	GCGC	2 cut(s)	11, 69
Cfr10I	RCCGGY	1 cut(s)	304
CviAII	CATG	2 cut(s)	104, 131
CviJI	RGCY	5 cut(s)	88, 150, 196, 200, 349
CviKI_1	RGCY	5 cut(s)	88, 150, 196, 200, 349
DdeI	CTNAG	1 cut(s)	240
DpnI	GATC	2 cut(s)	207, 291
DpnII	GATC	2 cut(s)	205, 289
Eco130I	CCWWGG	1 cut(s)	172
Eco147I	AGGCCT	1 cut(s)	150
EcoT14I	CCWWGG	1 cut(s)	172
EcoT22I	ATGCAT	1 cut(s)	235
ErhI	CCWWGG	1 cut(s)	172
FaeI	CATG	2 cut(s)	107, 134
FaiI	YATR	8 cut(s)	20, 105, 132, 248, 258, 263, 279, 302
FalI	AAGNNNNNCTT	2 cut(s)	195, 227
FatI	CATG	2 cut(s)	103, 130
FokI	GGATG	1 cut(s)	354
FspBI	CTAG	2 cut(s)	197, 224
GlaI	GCGC	2 cut(s)	10, 68
HaeII	RGCGCY	1 cut(s)	12
HaeIII	GGCC	2 cut(s)	150, 349
HapII	CCGG	2 cut(s)	305, 371
HhaI	GCGC	2 cut(s)	11, 69
Hin1II	CATG	2 cut(s)	107, 134
Hin6I	GCGC	2 cut(s)	9, 67
HinP1I	GCGC	2 cut(s)	9, 67
HinfI	GANTC	1 cut(s)	274
HpaII	CCGG	2 cut(s)	305, 371
HphI	GGTGA	1 cut(s)	59
Hpy166II	GTNNAC	1 cut(s)	116
Hpy188I	TCNGA	1 cut(s)	289
Hpy188III	TCNNGA	4 cut(s)	94, 167, 203, 327
Hpy8I	GTNNAC	1 cut(s)	116
HpyCH4III	ACNGT	2 cut(s)	76, 313
HpyCH4V	TGCA	5 cut(s)	116, 124, 182, 233, 265
HpyF10VI	GCNNNNNNNGC	3 cut(s)	188, 197, 355
HpyF3I	CTNAG	1 cut(s)	240
Hsp92II	CATG	2 cut(s)	107, 134
HspAI	GCGC	2 cut(s)	9, 67
Kzo9I	GATC	2 cut(s)	205, 289
LmnI	GCTCC	1 cut(s)	193
LpnPI	CCDG	4 cut(s)	25, 132, 318, 384
LweI	GCATC	3 cut(s)	133, 178, 220
MaeI	CTAG	2 cut(s)	197, 224
MaeIII	GTNAC	1 cut(s)	307
MalI	GATC	2 cut(s)	207, 291
MboI	GATC	2 cut(s)	205, 289
MboII	GAAGA	7 cut(s)	200, 203, 284, 353, 356, 411, 414
MflI	RGATCY	1 cut(s)	205
MhlI	GDGCHC	1 cut(s)	118
MluCI	AATT	2 cut(s)	38, 162
MnlI	CCTC	2 cut(s)	102, 229
Mph1103I	ATGCAT	1 cut(s)	235
MslI	CAYNNNNRTG	1 cut(s)	129
MspI	CCGG	2 cut(s)	305, 371
Mva1269I	GAATGC	1 cut(s)	233
MwoI	GCNNNNNNNGC	3 cut(s)	188, 197, 355
NdeII	GATC	2 cut(s)	205, 289
NheI	GCTAGC	1 cut(s)	196
NlaIII	CATG	2 cut(s)	107, 134
NsiI	ATGCAT	1 cut(s)	235
NspI	RCATGY	1 cut(s)	107
PceI	AGGCCT	1 cut(s)	150
PciI	ACATGT	1 cut(s)	103
PctI	GAATGC	1 cut(s)	233
PfeI	GAWTC	1 cut(s)	274
PscI	ACATGT	1 cut(s)	103
PsuI	RGATCY	1 cut(s)	205
RseI	CAYNNNNRTG	1 cut(s)	129
Sau3AI	GATC	2 cut(s)	205, 289
SduI	GDGCHC	1 cut(s)	118
SetI	ASST	7 cut(s)	90, 121, 174, 198, 202, 221, 387
SfaNI	GCATC	3 cut(s)	133, 178, 220
SmiMI	CAYNNNNRTG	1 cut(s)	129
SmlI	CTYRAG	1 cut(s)	201
SmoI	CTYRAG	1 cut(s)	201
Sse9I	AATT	2 cut(s)	38, 162
SseBI	AGGCCT	1 cut(s)	150
SsiI	CCGC	1 cut(s)	191
SspMI	CTAG	2 cut(s)	197, 224
StuI	AGGCCT	1 cut(s)	150
StyI	CCWWGG	1 cut(s)	172
TaaI	ACNGT	2 cut(s)	76, 313
TasI	AATT	2 cut(s)	38, 162
TfiI	GAWTC	1 cut(s)	274
TscAI	CASTG	2 cut(s)	40, 318
TspDTI	ATGAA	4 cut(s)	235, 266, 287, 356
TspRI	CASTG	2 cut(s)	40, 318
VneI	GTGCAC	1 cut(s)	114
XapI	RAATTY	1 cut(s)	162
XceI	RCATGY	1 cut(s)	107
XspI	CTAG	2 cut(s)	197, 224
Zsp2I	ATGCAT	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.