Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0002402

Physical Location & Seq

Genomic Coordinates Forward (+)

18910649 .. 18911136

Gene Structure 488 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G008660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGTCAGGACATCCTATCACCAAAATTCTCAATGAAAATAGTCTTGAGGGCCTAAACTTCAATGACTGGTTCCACAATTTGAAAATTGTATTGACATTTGATAAGATCGCTTATATCTTACAAAATGCACCTCCTCACACTCCTTTGGCTCAAGATGCAACCAATGAGCAACGTGTTGCTTATCAAAAGCATAAGGATGATGACATTCAAGCTAAATGTGTTATGCTTGCATCTATGAACTCACAACTTCAGAAGCAACATGAGAACATGGATAGCGCCACTTCTATATTACTCCATCTCATTGAATTGTTTGGTGAGAAAAATAGAAATACAAAACACATGAGGGGTGCACCTGTGCATCAACATGGTCTCAAAATGATGGGTCTTATTGAGCAAATTCAAGACCTAGGGTTTGAACTTGATGCGGAGCTCAAGATCTTCTTCTATCCTCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Retrotran_gag_2 zf-CCHC

Protein Analysis

151

Amino Acids

17.32

Weight (kDa)

6.11

Isoelectric Point (pI)

41.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002402)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g29991
malus_domestica	MD00G1044200.v1.1
prunus_persica	Prupe.2G062600_v2.0.a1 Prupe.2G064700_v2.0.a1 Prupe.6G167800_v2.0.a1
pyrus_communis	pycom13g29530 pycom17g02500 pycom39g00040 pycom976g00080
rosa_chinensis	RchiOBHm_Chr1g0376911 RchiOBHm_Chr1g0379561 RchiOBHm_Chr2g0165661 RchiOBHm_Chr2g0176521
rosa_multiflora	Rmu_sc0000070.1_g000011 Rmu_sc0000555.1_g000020 Rmu_sc0001291.1_g000051 Rmu_sc0001306.1_g000003 Rmu_sc0005142.1_g000016 Rmu_ssc0000389.1_g000014
rosa_roxburghii	Rroxscaffold_2G00096870 Rroxscaffold_5G00384810 Rroxscaffold_6G00394930
rosa_samantha	Rh1CG138000 Rh1CG192400 Rh7BG220700
rosa_wichuraiana	Rw0G002230 Rw0G012080 Rw1G007200 Rw1G008660 Rw1G011890 Rw2G018430 Rw3G008190 Rw3G020340 Rw3G024460 Rw4G000210 Rw5G007300 Rw5G015820 Rw5G032410 Rw5G048130 Rw5G049610 Rw7G025770 Rw7G028470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	425
AcsI	RAATTY	2 cut(s)	24, 396
AcuI	CTGAAG	1 cut(s)	233
AflIII	ACRYGT	1 cut(s)	172
AgsI	TTSAA	6 cut(s)	61, 82, 209, 305, 401, 416
AluBI	AGCT	2 cut(s)	212, 430
AluI	AGCT	2 cut(s)	212, 430
Alw21I	GWGCWC	2 cut(s)	352, 432
Alw26I	GTCTC	1 cut(s)	374
Alw44I	GTGCAC	1 cut(s)	348
AoxI	GGCC	1 cut(s)	49
ApaLI	GTGCAC	1 cut(s)	348
ApoI	RAATTY	2 cut(s)	24, 396
ArsI	GACNNNNNNTTYG	2 cut(s)	395, 427
AspA2I	CCTAGG	1 cut(s)	406
AspLEI	GCGC	1 cut(s)	278
AspS9I	GGNCC	1 cut(s)	49
AsuHPI	GGTGA	2 cut(s)	10, 326
AvrII	CCTAGG	1 cut(s)	406
BaeGI	GKGCMC	1 cut(s)	352
BanII	GRGCYC	1 cut(s)	432
Bbv12I	GWGCWC	2 cut(s)	352, 432
BccI	CCATC	2 cut(s)	303, 373
BcoDI	GTCTC	1 cut(s)	374
BfaI	CTAG	2 cut(s)	407, 454
BfoI	RGCGCY	1 cut(s)	279
BglII	AGATCT	1 cut(s)	435
BlnI	CCTAGG	1 cut(s)	406
BmgT120I	GGNCC	1 cut(s)	49
BmiI	GGNNCC	1 cut(s)	71
BmsI	GCATC	4 cut(s)	145, 239, 367, 412
BpuEI	CTTGAG	3 cut(s)	65, 135, 416
BsaI	GGTCTC	1 cut(s)	374
BsaJI	CCNNGG	1 cut(s)	406
Bse1I	ACTGG	1 cut(s)	71
BseDI	CCNNGG	1 cut(s)	406
BseGI	GGATG	2 cut(s)	10, 202
BseNI	ACTGG	1 cut(s)	71
BseRI	GAGGAG	1 cut(s)	123
BseSI	GKGCMC	1 cut(s)	352
BshFI	GGCC	1 cut(s)	51
BsiHKAI	GWGCWC	2 cut(s)	352, 432
BsmAI	GTCTC	1 cut(s)	374
BsnI	GGCC	1 cut(s)	51
Bso31I	GGTCTC	1 cut(s)	374
Bsp1286I	GDGCHC	2 cut(s)	352, 432
Bsp143I	GATC	2 cut(s)	105, 435
BspACI	CCGC	1 cut(s)	425
BspANI	GGCC	1 cut(s)	51
BspLI	GGNNCC	1 cut(s)	71
BspTNI	GGTCTC	1 cut(s)	374
BsrI	ACTGG	1 cut(s)	71
BssECI	CCNNGG	1 cut(s)	406
BssMI	GATC	2 cut(s)	105, 435
BssT1I	CCWWGG	1 cut(s)	406
BstC8I	GCNNGC	1 cut(s)	228
BstF5I	GGATG	2 cut(s)	10, 202
BstH2I	RGCGCY	1 cut(s)	279
BstHHI	GCGC	1 cut(s)	278
BstKTI	GATC	2 cut(s)	108, 438
BstMAI	GTCTC	1 cut(s)	374
BstMBI	GATC	2 cut(s)	105, 435
BstMWI	GCNNNNNNNGC	1 cut(s)	155
BstSLI	GKGCMC	1 cut(s)	352
BstX2I	RGATCY	1 cut(s)	435
BstYI	RGATCY	1 cut(s)	435
BsuRI	GGCC	1 cut(s)	51
BtsCI	GGATG	2 cut(s)	10, 202
Cac8I	GCNNGC	1 cut(s)	228
CfoI	GCGC	1 cut(s)	278
Cfr13I	GGNCC	1 cut(s)	49
CviAII	CATG	4 cut(s)	260, 268, 340, 365
CviJI	RGCY	4 cut(s)	51, 149, 212, 430
CviKI_1	RGCY	4 cut(s)	51, 149, 212, 430
DpnI	GATC	2 cut(s)	107, 437
DpnII	GATC	2 cut(s)	105, 435
Ecl136II	GAGCTC	1 cut(s)	430
Eco130I	CCWWGG	1 cut(s)	406
Eco24I	GRGCYC	1 cut(s)	432
Eco31I	GGTCTC	1 cut(s)	374
Eco53kI	GAGCTC	1 cut(s)	430
Eco57I	CTGAAG	1 cut(s)	233
EcoICRI	GAGCTC	1 cut(s)	430
EcoO109I	RGGNCCY	1 cut(s)	49
EcoT14I	CCWWGG	1 cut(s)	406
EcoT38I	GRGCYC	1 cut(s)	432
ErhI	CCWWGG	1 cut(s)	406
FaeI	CATG	4 cut(s)	263, 271, 343, 368
FaiI	YATR	9 cut(s)	114, 192, 224, 236, 261, 269, 287, 341, 366
FalI	AAGNNNNNCTT	1 cut(s)	425
FatI	CATG	4 cut(s)	259, 267, 339, 364
FokI	GGATG	1 cut(s)	209
FriOI	GRGCYC	1 cut(s)	432
FspBI	CTAG	2 cut(s)	407, 454
GlaI	GCGC	1 cut(s)	277
HaeII	RGCGCY	1 cut(s)	279
HaeIII	GGCC	1 cut(s)	51
HhaI	GCGC	1 cut(s)	278
Hin1II	CATG	4 cut(s)	263, 271, 343, 368
Hin6I	GCGC	1 cut(s)	276
HinP1I	GCGC	1 cut(s)	276
HphI	GGTGA	2 cut(s)	10, 326
Hpy166II	GTNNAC	1 cut(s)	350
Hpy188I	TCNGA	1 cut(s)	252
Hpy188III	TCNNGA	5 cut(s)	6, 44, 152, 401, 433
Hpy8I	GTNNAC	1 cut(s)	350
HpyCH4IV	ACGT	1 cut(s)	172
HpyCH4V	TGCA	5 cut(s)	128, 158, 230, 350, 358
HpyF10VI	GCNNNNNNNGC	1 cut(s)	155
HpySE526I	ACGT	1 cut(s)	172
Hsp92II	CATG	4 cut(s)	263, 271, 343, 368
HspAI	GCGC	1 cut(s)	276
Kzo9I	GATC	2 cut(s)	105, 435
LmnI	GCTCC	1 cut(s)	427
LpnPI	CCDG	2 cut(s)	52, 366
LweI	GCATC	4 cut(s)	145, 239, 367, 412
MaeI	CTAG	2 cut(s)	407, 454
MaeII	ACGT	1 cut(s)	172
MalI	GATC	2 cut(s)	107, 437
MboI	GATC	2 cut(s)	105, 435
MboII	GAAGA	2 cut(s)	430, 433
MflI	RGATCY	1 cut(s)	435
MhlI	GDGCHC	2 cut(s)	352, 432
MluCI	AATT	5 cut(s)	24, 76, 84, 305, 396
MnlI	CCTC	4 cut(s)	40, 141, 144, 336
MslI	CAYNNNNRTG	2 cut(s)	195, 363
MwoI	GCNNNNNNNGC	1 cut(s)	155
NdeII	GATC	2 cut(s)	105, 435
NlaIII	CATG	4 cut(s)	263, 271, 343, 368
NlaIV	GGNNCC	1 cut(s)	71
Psp124BI	GAGCTC	1 cut(s)	432
PspN4I	GGNNCC	1 cut(s)	71
PspPI	GGNCC	1 cut(s)	49
PsuI	RGATCY	1 cut(s)	435
RseI	CAYNNNNRTG	2 cut(s)	195, 363
SacI	GAGCTC	1 cut(s)	432
Sau3AI	GATC	2 cut(s)	105, 435
Sau96I	GGNCC	1 cut(s)	49
SduI	GDGCHC	2 cut(s)	352, 432
SetI	ASST	6 cut(s)	133, 175, 214, 355, 408, 432
SfaNI	GCATC	4 cut(s)	145, 239, 367, 412
SmiMI	CAYNNNNRTG	2 cut(s)	195, 363
SmlI	CTYRAG	3 cut(s)	44, 150, 431
SmoI	CTYRAG	3 cut(s)	44, 150, 431
Sse9I	AATT	5 cut(s)	24, 76, 84, 305, 396
SsiI	CCGC	1 cut(s)	425
SspMI	CTAG	2 cut(s)	407, 454
SstI	GAGCTC	1 cut(s)	432
StyI	CCWWGG	1 cut(s)	406
TaiI	ACGT	1 cut(s)	175
TasI	AATT	5 cut(s)	24, 76, 84, 305, 396
TspDTI	ATGAA	2 cut(s)	48, 251
VneI	GTGCAC	1 cut(s)	348
XapI	RAATTY	2 cut(s)	24, 396
XmaJI	CCTAGG	1 cut(s)	406
XspI	CTAG	2 cut(s)	407, 454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.