gag-polypeptide of LTR copia-type
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_5g29991 |
| malus_domestica | MD00G1044200.v1.1 |
| prunus_persica | Prupe.2G062600_v2.0.a1 Prupe.2G064700_v2.0.a1 Prupe.6G167800_v2.0.a1 |
| pyrus_communis | pycom13g29530 pycom17g02500 pycom39g00040 pycom976g00080 |
| rosa_chinensis | RchiOBHm_Chr1g0376911 RchiOBHm_Chr1g0379561 RchiOBHm_Chr2g0165661 RchiOBHm_Chr2g0176521 |
| rosa_multiflora | Rmu_sc0000070.1_g000011 Rmu_sc0000555.1_g000020 Rmu_sc0001291.1_g000051 Rmu_sc0001306.1_g000003 Rmu_sc0005142.1_g000016 Rmu_ssc0000389.1_g000014 |
| rosa_roxburghii | Rroxscaffold_2G00096870 Rroxscaffold_5G00384810 Rroxscaffold_6G00394930 |
| rosa_samantha | Rh1CG138000 Rh1CG192400 Rh7BG220700 |
| rosa_wichuraiana | Rw0G002230 Rw0G012080 Rw1G007200 Rw1G008660 Rw1G011890 Rw2G018430 Rw3G008190 Rw3G020340 Rw3G024460 Rw4G000210 Rw5G007300 Rw5G015820 Rw5G032410 Rw5G048130 Rw5G049610 Rw7G025770 Rw7G028470 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 73, 503 |
| AclWI | GGATC | 1 cut(s) | 438 |
| AcsI | RAATTY | 1 cut(s) | 24 |
| AcuI | CTGAAG | 1 cut(s) | 233 |
| AflIII | ACRYGT | 1 cut(s) | 172 |
| AgsI | TTSAA | 4 cut(s) | 61, 82, 697, 711 |
| AluBI | AGCT | 4 cut(s) | 212, 355, 470, 680 |
| AluI | AGCT | 4 cut(s) | 212, 355, 470, 680 |
| Alw21I | GWGCWC | 1 cut(s) | 385 |
| Alw44I | GTGCAC | 1 cut(s) | 381 |
| AlwI | GGATC | 1 cut(s) | 438 |
| AoxI | GGCC | 1 cut(s) | 49 |
| ApaI | GGGCCC | 1 cut(s) | 53 |
| ApaLI | GTGCAC | 1 cut(s) | 381 |
| ApoI | RAATTY | 1 cut(s) | 24 |
| AspLEI | GCGC | 2 cut(s) | 278, 336 |
| AspS9I | GGNCC | 2 cut(s) | 49, 50 |
| AsuHPI | GGTGA | 2 cut(s) | 10, 326 |
| AxyI | CCTNAGG | 1 cut(s) | 579 |
| BaeGI | GKGCMC | 3 cut(s) | 53, 385, 660 |
| BanII | GRGCYC | 1 cut(s) | 53 |
| BbsI | GAAGAC | 1 cut(s) | 699 |
| Bbv12I | GWGCWC | 1 cut(s) | 385 |
| BccI | CCATC | 3 cut(s) | 303, 647, 731 |
| BfoI | RGCGCY | 1 cut(s) | 279 |
| BisI | GCNGC | 1 cut(s) | 504 |
| BlsI | GCNGC | 1 cut(s) | 505 |
| BmgT120I | GGNCC | 2 cut(s) | 49, 50 |
| BmiI | GGNNCC | 3 cut(s) | 51, 71, 621 |
| BmsI | GCATC | 4 cut(s) | 145, 239, 400, 698 |
| BpiI | GAAGAC | 1 cut(s) | 699 |
| BpuEI | CTTGAG | 3 cut(s) | 65, 135, 192 |
| Bse1I | ACTGG | 4 cut(s) | 71, 279, 528, 665 |
| Bse21I | CCTNAGG | 1 cut(s) | 579 |
| BseGI | GGATG | 4 cut(s) | 202, 230, 524, 689 |
| BseMII | CTCAG | 1 cut(s) | 462 |
| BseNI | ACTGG | 4 cut(s) | 71, 279, 528, 665 |
| BseSI | GKGCMC | 3 cut(s) | 53, 385, 660 |
| BshFI | GGCC | 1 cut(s) | 51 |
| BsiHKAI | GWGCWC | 1 cut(s) | 385 |
| BsnI | GGCC | 1 cut(s) | 51 |
| Bsp120I | GGGCCC | 1 cut(s) | 49 |
| Bsp1286I | GDGCHC | 3 cut(s) | 53, 385, 660 |
| Bsp143I | GATC | 3 cut(s) | 105, 430, 445 |
| BspACI | CCGC | 2 cut(s) | 73, 503 |
| BspANI | GGCC | 1 cut(s) | 51 |
| BspCNI | CTCAG | 1 cut(s) | 463 |
| BspLI | GGNNCC | 3 cut(s) | 51, 71, 621 |
| BspPI | GGATC | 1 cut(s) | 438 |
| BsrI | ACTGG | 4 cut(s) | 71, 279, 528, 665 |
| BssMI | GATC | 3 cut(s) | 105, 430, 445 |
| Bst4CI | ACNGT | 1 cut(s) | 343 |
| Bst6I | CTCTTC | 1 cut(s) | 659 |
| BstC8I | GCNNGC | 1 cut(s) | 228 |
| BstDEI | CTNAG | 2 cut(s) | 471, 579 |
| BstF5I | GGATG | 4 cut(s) | 202, 230, 524, 689 |
| BstH2I | RGCGCY | 1 cut(s) | 279 |
| BstHHI | GCGC | 2 cut(s) | 278, 336 |
| BstKTI | GATC | 3 cut(s) | 108, 433, 448 |
| BstMBI | GATC | 3 cut(s) | 105, 430, 445 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 155, 512, 686 |
| BstNSI | RCATGY | 1 cut(s) | 374 |
| BstSLI | GKGCMC | 3 cut(s) | 53, 385, 660 |
| BstV2I | GAAGAC | 1 cut(s) | 699 |
| Bsu36I | CCTNAGG | 1 cut(s) | 579 |
| BsuRI | GGCC | 1 cut(s) | 51 |
| BtsCI | GGATG | 4 cut(s) | 202, 230, 524, 689 |
| BtsIMutI | CAGTG | 2 cut(s) | 300, 658 |
| Cac8I | GCNNGC | 1 cut(s) | 228 |
| CfoI | GCGC | 2 cut(s) | 278, 336 |
| Cfr13I | GGNCC | 2 cut(s) | 49, 50 |
| CviAII | CATG | 3 cut(s) | 235, 260, 371 |
| CviJI | RGCY | 9 cut(s) | 51, 70, 149, 212, 355, 470, 506, 577, 680 |
| CviKI_1 | RGCY | 9 cut(s) | 51, 70, 149, 212, 355, 470, 506, 577, 680 |
| DdeI | CTNAG | 2 cut(s) | 471, 579 |
| DpnI | GATC | 3 cut(s) | 107, 432, 447 |
| DpnII | GATC | 3 cut(s) | 105, 430, 445 |
| Eam1104I | CTCTTC | 1 cut(s) | 659 |
| EarI | CTCTTC | 1 cut(s) | 659 |
| Eco24I | GRGCYC | 1 cut(s) | 53 |
| Eco57I | CTGAAG | 1 cut(s) | 233 |
| Eco81I | CCTNAGG | 1 cut(s) | 579 |
| EcoO109I | RGGNCCY | 1 cut(s) | 49 |
| EcoT38I | GRGCYC | 1 cut(s) | 53 |
| FaeI | CATG | 3 cut(s) | 238, 263, 374 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 669, 701 |
| FatI | CATG | 3 cut(s) | 234, 259, 370 |
| Fnu4HI | GCNGC | 1 cut(s) | 504 |
| FokI | GGATG | 4 cut(s) | 209, 217, 511, 676 |
| FriOI | GRGCYC | 1 cut(s) | 53 |
| Fsp4HI | GCNGC | 1 cut(s) | 504 |
| GlaI | GCGC | 2 cut(s) | 277, 335 |
| GluI | GCNGC | 1 cut(s) | 504 |
| HaeII | RGCGCY | 1 cut(s) | 279 |
| HaeIII | GGCC | 1 cut(s) | 51 |
| HhaI | GCGC | 2 cut(s) | 278, 336 |
| Hin1II | CATG | 3 cut(s) | 238, 263, 374 |
| Hin6I | GCGC | 2 cut(s) | 276, 334 |
| HinP1I | GCGC | 2 cut(s) | 276, 334 |
| HindIII | AAGCTT | 1 cut(s) | 678 |
| HphI | GGTGA | 2 cut(s) | 10, 326 |
| Hpy166II | GTNNAC | 1 cut(s) | 383 |
| Hpy188I | TCNGA | 2 cut(s) | 252, 445 |
| Hpy188III | TCNNGA | 6 cut(s) | 6, 44, 152, 361, 484, 727 |
| Hpy8I | GTNNAC | 1 cut(s) | 383 |
| HpyAV | CCTTC | 1 cut(s) | 601 |
| HpyCH4III | ACNGT | 1 cut(s) | 343 |
| HpyCH4IV | ACGT | 1 cut(s) | 172 |
| HpyCH4V | TGCA | 9 cut(s) | 128, 158, 230, 383, 391, 421, 645, 675, 689 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 155, 512, 686 |
| HpyF3I | CTNAG | 2 cut(s) | 471, 579 |
| HpySE526I | ACGT | 1 cut(s) | 172 |
| Hsp92II | CATG | 3 cut(s) | 238, 263, 374 |
| HspAI | GCGC | 2 cut(s) | 276, 334 |
| Kzo9I | GATC | 3 cut(s) | 105, 430, 445 |
| LmnI | GCTCC | 2 cut(s) | 75, 584 |
| LpnPI | CCDG | 7 cut(s) | 52, 292, 399, 446, 541, 646, 712 |
| LweI | GCATC | 4 cut(s) | 145, 239, 400, 698 |
| MaeII | ACGT | 1 cut(s) | 172 |
| MaeIII | GTNAC | 2 cut(s) | 463, 718 |
| MalI | GATC | 3 cut(s) | 107, 432, 447 |
| MboI | GATC | 3 cut(s) | 105, 430, 445 |
| MhlI | GDGCHC | 3 cut(s) | 53, 385, 660 |
| MluCI | AATT | 5 cut(s) | 24, 76, 84, 305, 670 |
| MnlI | CCTC | 4 cut(s) | 40, 144, 369, 660 |
| MseI | TTAA | 1 cut(s) | 744 |
| MslI | CAYNNNNRTG | 1 cut(s) | 195 |
| MspA1I | CMGCKG | 1 cut(s) | 470 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 155, 512, 686 |
| NdeII | GATC | 3 cut(s) | 105, 430, 445 |
| NlaIII | CATG | 3 cut(s) | 238, 263, 374 |
| NlaIV | GGNNCC | 3 cut(s) | 51, 71, 621 |
| NspI | RCATGY | 1 cut(s) | 374 |
| PkrI | GCNGC | 1 cut(s) | 505 |
| PspN4I | GGNNCC | 3 cut(s) | 51, 71, 621 |
| PspOMI | GGGCCC | 1 cut(s) | 49 |
| PspPI | GGNCC | 2 cut(s) | 49, 50 |
| PvuII | CAGCTG | 1 cut(s) | 470 |
| RseI | CAYNNNNRTG | 1 cut(s) | 195 |
| SaqAI | TTAA | 1 cut(s) | 744 |
| SatI | GCNGC | 1 cut(s) | 504 |
| Sau3AI | GATC | 3 cut(s) | 105, 430, 445 |
| Sau96I | GGNCC | 2 cut(s) | 49, 50 |
| SduI | GDGCHC | 3 cut(s) | 53, 385, 660 |
| SetI | ASST | 8 cut(s) | 175, 214, 357, 388, 472, 544, 631, 682 |
| SfaNI | GCATC | 4 cut(s) | 145, 239, 400, 698 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 195 |
| SmlI | CTYRAG | 3 cut(s) | 44, 150, 207 |
| SmoI | CTYRAG | 3 cut(s) | 44, 150, 207 |
| Sse9I | AATT | 5 cut(s) | 24, 76, 84, 305, 670 |
| SsiI | CCGC | 2 cut(s) | 73, 503 |
| TaaI | ACNGT | 1 cut(s) | 343 |
| TaiI | ACGT | 1 cut(s) | 175 |
| TaqI | TCGA | 1 cut(s) | 99 |
| TasI | AATT | 5 cut(s) | 24, 76, 84, 305, 670 |
| TauI | GCSGC | 1 cut(s) | 506 |
| Tru1I | TTAA | 1 cut(s) | 744 |
| Tru9I | TTAA | 1 cut(s) | 744 |
| TscAI | CASTG | 2 cut(s) | 307, 665 |
| TspDTI | ATGAA | 5 cut(s) | 48, 251, 391, 422, 513 |
| TspRI | CASTG | 2 cut(s) | 307, 665 |
| VneI | GTGCAC | 1 cut(s) | 381 |
| XapI | RAATTY | 1 cut(s) | 24 |
| XceI | RCATGY | 1 cut(s) | 374 |