Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0002402

Physical Location & Seq

Genomic Coordinates Reverse (-)

8756168 .. 8757229

Gene Structure 1062 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G064700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGTCTGGGAACGCATTTGCCAAACTCCTAGACAAATATTGTCTAGAGGGACATAATTTTCCAACATGGTACCGTAATCTCAAAATATTCATGACTATCGAGAAGATTGTGTATGTACTAGAGCAAGCTTCTGACATAGAGCCCCCTGCTGAAGATGCTTCTCAGGAAATGAATGAGGAGCTCCAGAAACAGCATGAGCATATGATGTATGCTGCTGACATGATATCCCATCTCCAAGAGCTTTATAGAAAAGGTACACGCAACAGACGCTTCAGCGCCGTATGTGAGCTTTTGAAGACCAAGATGGTTAAGGGAGCCCTAGTCCACCAACATAGATTGAAGATGATAGGACTCACTGAGCAGTTGGAAAGTCTTAATAGTCCACCAGACCGCAACTTGGCCACCAACATCTTCCTTGAGTCCCTTTCTGATTCCTTCTCCCATTTTGTTATGAACTACAACATGGGGAAGATAGAGCACCCTCTCTCAGAGTTGCTGAACATGTACCTTCAAGAGAGAAAGACGGATGGGACCATTGCTGTTTTTGAGAAGGGTTCAACTTCTTCTGCTAAGCCCAATAATAAGGGTAAAGACAAATTCAATGTTAGCAAGAAGAAGAAACGGAACCCTAAACTCAAACCCAAGGGAGGCGTCAAGAAGAAACAGGAAGAAGGAAAAGAGGTCATGTTGTTGCATAGACTAAGAACAAGTAGTAAGCTCATAGAGATGAAGATTGCTCGGATTCGGAATCGTCAAGAAAGCCTTTATTTGTTTATGGATATCTTTAGAACTTATGAGCTTATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Retrotran_gag_2 zf-CCHC

Protein Analysis

269

Amino Acids

31.22

Weight (kDa)

9.5

Isoelectric Point (pI)

45.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002402)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g29991
malus_domestica	MD00G1044200.v1.1
prunus_persica	Prupe.2G062600_v2.0.a1 Prupe.2G064700_v2.0.a1 Prupe.6G167800_v2.0.a1
pyrus_communis	pycom13g29530 pycom17g02500 pycom39g00040 pycom976g00080
rosa_chinensis	RchiOBHm_Chr1g0376911 RchiOBHm_Chr1g0379561 RchiOBHm_Chr2g0165661 RchiOBHm_Chr2g0176521
rosa_multiflora	Rmu_sc0000070.1_g000011 Rmu_sc0000555.1_g000020 Rmu_sc0001291.1_g000051 Rmu_sc0001306.1_g000003 Rmu_sc0005142.1_g000016 Rmu_ssc0000389.1_g000014
rosa_roxburghii	Rroxscaffold_2G00096870 Rroxscaffold_5G00384810 Rroxscaffold_6G00394930
rosa_samantha	Rh1CG138000 Rh1CG192400 Rh7BG220700
rosa_wichuraiana	Rw0G002230 Rw0G012080 Rw1G007200 Rw1G008660 Rw1G011890 Rw2G018430 Rw3G008190 Rw3G020340 Rw3G024460 Rw4G000210 Rw5G007300 Rw5G015820 Rw5G032410 Rw5G048130 Rw5G049610 Rw7G025770 Rw7G028470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	69
AccB1I	GGYRCC	1 cut(s)	69
AciI	CCGC	1 cut(s)	391
AcoI	YGGCCR	1 cut(s)	399
AcsI	RAATTY	1 cut(s)	596
AcuI	CTGAAG	2 cut(s)	171, 256
AcyI	GRCGYC	1 cut(s)	651
AfaI	GTAC	4 cut(s)	71, 117, 256, 506
AfiI	CCNNNNNNNGG	2 cut(s)	397, 647
AflIII	ACRYGT	1 cut(s)	501
AgsI	TTSAA	5 cut(s)	295, 340, 512, 558, 601
AluBI	AGCT	6 cut(s)	128, 181, 241, 289, 718, 799
AluI	AGCT	6 cut(s)	128, 181, 241, 289, 718, 799
Alw21I	GWGCWC	2 cut(s)	183, 480
AoxI	GGCC	1 cut(s)	399
ApeKI	GCWGC	1 cut(s)	212
ApoI	RAATTY	1 cut(s)	596
Asp718I	GGTACC	1 cut(s)	69
AspLEI	GCGC	1 cut(s)	278
AspS9I	GGNCC	1 cut(s)	531
AvaII	GGWCC	1 cut(s)	531
BalI	TGGCCA	1 cut(s)	401
BanI	GGYRCC	1 cut(s)	69
BanII	GRGCYC	3 cut(s)	144, 183, 319
BbsI	GAAGAC	1 cut(s)	302
Bbv12I	GWGCWC	2 cut(s)	183, 480
BbvI	GCAGC	1 cut(s)	199
BccI	CCATC	3 cut(s)	237, 298, 521
BceAI	ACGGC	1 cut(s)	263
BfaI	CTAG	4 cut(s)	29, 44, 119, 320
BfoI	RGCGCY	1 cut(s)	279
BisI	GCNGC	1 cut(s)	213
BlpI	GCTNAGC	1 cut(s)	570
BlsI	GCNGC	1 cut(s)	214
Bme18I	GGWCC	1 cut(s)	531
BmgT120I	GGNCC	1 cut(s)	531
BmiI	GGNNCC	4 cut(s)	71, 316, 532, 626
BmsI	GCATC	1 cut(s)	145
BpiI	GAAGAC	1 cut(s)	302
BpmI	CTGGAG	1 cut(s)	167
Bpu1102I	GCTNAGC	1 cut(s)	570
BpuEI	CTTGAG	1 cut(s)	437
BsaHI	GRCGYC	1 cut(s)	651
BsaJI	CCNNGG	1 cut(s)	642
BsaXI	ACNNNNNCTCC	2 cut(s)	306, 336
Bsc4I	CCNNNNNNNGG	2 cut(s)	397, 647
Bse3DI	GCAATG	1 cut(s)	534
BseDI	CCNNGG	1 cut(s)	642
BseGI	GGATG	1 cut(s)	532
BseLI	CCNNNNNNNGG	2 cut(s)	397, 647
BseMI	GCAATG	1 cut(s)	534
BseMII	CTCAG	3 cut(s)	176, 348, 501
BseRI	GAGGAG	1 cut(s)	191
BseXI	GCAGC	1 cut(s)	199
BshFI	GGCC	1 cut(s)	401
BshNI	GGYRCC	1 cut(s)	69
BsiHKAI	GWGCWC	2 cut(s)	183, 480
BslFI	GGGAC	3 cut(s)	63, 406, 544
BslI	CCNNNNNNNGG	2 cut(s)	397, 647
BsmFI	GGGAC	3 cut(s)	63, 406, 544
BsnI	GGCC	1 cut(s)	401
Bsp1286I	GDGCHC	4 cut(s)	144, 183, 319, 480
Bsp1720I	GCTNAGC	1 cut(s)	570
BspACI	CCGC	1 cut(s)	391
BspANI	GGCC	1 cut(s)	401
BspCNI	CTCAG	3 cut(s)	175, 349, 500
BspHI	TCATGA	1 cut(s)	90
BspLI	GGNNCC	4 cut(s)	71, 316, 532, 626
BspT107I	GGYRCC	1 cut(s)	69
BsrDI	GCAATG	1 cut(s)	534
BssECI	CCNNGG	1 cut(s)	642
BssNI	GRCGYC	1 cut(s)	651
BssT1I	CCWWGG	1 cut(s)	642
Bst4CI	ACNGT	1 cut(s)	74
BstACI	GRCGYC	1 cut(s)	651
BstC8I	GCNNGC	1 cut(s)	126
BstDEI	CTNAG	5 cut(s)	162, 357, 487, 570, 701
BstF5I	GGATG	1 cut(s)	532
BstH2I	RGCGCY	1 cut(s)	279
BstHHI	GCGC	1 cut(s)	278
BstMWI	GCNNNNNNNGC	2 cut(s)	155, 267
BstNSI	RCATGY	1 cut(s)	505
BstV1I	GCAGC	1 cut(s)	199
BstV2I	GAAGAC	1 cut(s)	302
BsuRI	GGCC	1 cut(s)	401
BtsCI	GGATG	1 cut(s)	532
BtsIMutI	CAGTG	1 cut(s)	354
Cac8I	GCNNGC	1 cut(s)	126
CciI	TCATGA	1 cut(s)	90
CfoI	GCGC	1 cut(s)	278
Cfr13I	GGNCC	1 cut(s)	531
CseI	GACGC	2 cut(s)	276, 640
Csp6I	GTAC	4 cut(s)	70, 116, 255, 505
CviAII	CATG	7 cut(s)	66, 91, 194, 220, 463, 502, 685
CviQI	GTAC	4 cut(s)	70, 116, 255, 505
DdeI	CTNAG	5 cut(s)	162, 357, 487, 570, 701
EaeI	YGGCCR	1 cut(s)	399
Ecl136II	GAGCTC	1 cut(s)	181
Eco130I	CCWWGG	1 cut(s)	642
Eco24I	GRGCYC	3 cut(s)	144, 183, 319
Eco32I	GATATC	2 cut(s)	225, 781
Eco47I	GGWCC	1 cut(s)	531
Eco53kI	GAGCTC	1 cut(s)	181
Eco57I	CTGAAG	2 cut(s)	171, 256
EcoICRI	GAGCTC	1 cut(s)	181
EcoRV	GATATC	2 cut(s)	225, 781
EcoT14I	CCWWGG	1 cut(s)	642
EcoT38I	GRGCYC	3 cut(s)	144, 183, 319
ErhI	CCWWGG	1 cut(s)	642
FaeI	CATG	7 cut(s)	69, 94, 197, 223, 466, 505, 688
FalI	AAGNNNNNCTT	2 cut(s)	747, 779
FaqI	GGGAC	3 cut(s)	63, 406, 544
FatI	CATG	7 cut(s)	65, 90, 193, 219, 462, 501, 684
FauNDI	CATATG	1 cut(s)	201
Fnu4HI	GCNGC	1 cut(s)	213
FokI	GGATG	1 cut(s)	539
FriOI	GRGCYC	3 cut(s)	144, 183, 319
Fsp4HI	GCNGC	1 cut(s)	213
FspBI	CTAG	4 cut(s)	29, 44, 119, 320
GlaI	GCGC	1 cut(s)	277
GluI	GCNGC	1 cut(s)	213
GsuI	CTGGAG	1 cut(s)	167
HaeII	RGCGCY	1 cut(s)	279
HaeIII	GGCC	1 cut(s)	401
HgaI	GACGC	2 cut(s)	276, 640
HhaI	GCGC	1 cut(s)	278
Hin1I	GRCGYC	1 cut(s)	651
Hin1II	CATG	7 cut(s)	69, 94, 197, 223, 466, 505, 688
Hin6I	GCGC	1 cut(s)	276
HinP1I	GCGC	1 cut(s)	276
HindIII	AAGCTT	1 cut(s)	126
HinfI	GANTC	5 cut(s)	351, 419, 431, 742, 748
Hpy166II	GTNNAC	3 cut(s)	257, 325, 383
Hpy188I	TCNGA	5 cut(s)	133, 430, 490, 741, 747
Hpy188III	TCNNGA	8 cut(s)	44, 91, 100, 164, 184, 512, 655, 755
Hpy8I	GTNNAC	3 cut(s)	257, 325, 383
HpyAV	CCTTC	4 cut(s)	445, 518, 544, 665
HpyCH4III	ACNGT	1 cut(s)	74
HpyCH4V	TGCA	1 cut(s)	694
HpyF10VI	GCNNNNNNNGC	2 cut(s)	155, 267
HpyF3I	CTNAG	5 cut(s)	162, 357, 487, 570, 701
Hsp92I	GRCGYC	1 cut(s)	651
Hsp92II	CATG	7 cut(s)	69, 94, 197, 223, 466, 505, 688
HspAI	GCGC	1 cut(s)	276
KpnI	GGTACC	1 cut(s)	73
LmnI	GCTCC	3 cut(s)	178, 186, 314
LpnPI	CCDG	5 cut(s)	149, 159, 197, 399, 650
Lsp1109I	GCAGC	1 cut(s)	199
LweI	GCATC	1 cut(s)	145
MaeI	CTAG	4 cut(s)	29, 44, 119, 320
MhlI	GDGCHC	4 cut(s)	144, 183, 319, 480
MlsI	TGGCCA	1 cut(s)	401
MluCI	AATT	2 cut(s)	55, 596
MluNI	TGGCCA	1 cut(s)	401
MlyI	GAGTC	2 cut(s)	345, 428
MmeI	TCCRAC	2 cut(s)	86, 345
MnlI	CCTC	5 cut(s)	40, 169, 492, 641, 673
Mox20I	TGGCCA	1 cut(s)	401
MscI	TGGCCA	1 cut(s)	401
MseI	TTAA	2 cut(s)	309, 375
MslI	CAYNNNNRTG	1 cut(s)	725
Msp20I	TGGCCA	1 cut(s)	401
MwoI	GCNNNNNNNGC	2 cut(s)	155, 267
NdeI	CATATG	1 cut(s)	201
NlaIII	CATG	7 cut(s)	69, 94, 197, 223, 466, 505, 688
NlaIV	GGNNCC	4 cut(s)	71, 316, 532, 626
NspI	RCATGY	1 cut(s)	505
PagI	TCATGA	1 cut(s)	90
PciI	ACATGT	1 cut(s)	501
PfeI	GAWTC	3 cut(s)	431, 742, 748
PkrI	GCNGC	1 cut(s)	214
PleI	GAGTC	2 cut(s)	345, 427
PpsI	GAGTC	2 cut(s)	345, 427
PscI	ACATGT	1 cut(s)	501
Psp124BI	GAGCTC	1 cut(s)	183
PspN4I	GGNNCC	4 cut(s)	71, 316, 532, 626
PspPI	GGNCC	1 cut(s)	531
RsaI	GTAC	4 cut(s)	71, 117, 256, 506
RsaNI	GTAC	4 cut(s)	70, 116, 255, 505
RseI	CAYNNNNRTG	1 cut(s)	725
SacI	GAGCTC	1 cut(s)	183
SaqAI	TTAA	2 cut(s)	309, 375
SatI	GCNGC	1 cut(s)	213
Sau96I	GGNCC	1 cut(s)	531
SchI	GAGTC	2 cut(s)	345, 428
SduI	GDGCHC	4 cut(s)	144, 183, 319, 480
SetI	ASST	9 cut(s)	130, 183, 243, 256, 291, 510, 684, 720, 801
SfaNI	GCATC	1 cut(s)	145
SinI	GGWCC	1 cut(s)	531
SmiMI	CAYNNNNRTG	1 cut(s)	725
SmlI	CTYRAG	1 cut(s)	416
SmoI	CTYRAG	1 cut(s)	416
Sse9I	AATT	2 cut(s)	55, 596
SsiI	CCGC	1 cut(s)	391
SspI	AATATT	2 cut(s)	38, 87
SspMI	CTAG	4 cut(s)	29, 44, 119, 320
SstI	GAGCTC	1 cut(s)	183
StyI	CCWWGG	1 cut(s)	642
TaaI	ACNGT	1 cut(s)	74
TaqI	TCGA	1 cut(s)	99
TasI	AATT	2 cut(s)	55, 596
TatI	WGTACW	1 cut(s)	115
TfiI	GAWTC	3 cut(s)	431, 742, 748
Tru1I	TTAA	2 cut(s)	309, 375
Tru9I	TTAA	2 cut(s)	309, 375
TscAI	CASTG	1 cut(s)	361
TseI	GCWGC	1 cut(s)	212
TspDTI	ATGAA	4 cut(s)	79, 185, 467, 743
TspGWI	ACGGA	2 cut(s)	539, 637
TspRI	CASTG	1 cut(s)	361
VpaK11BI	GGWCC	1 cut(s)	531
XapI	RAATTY	1 cut(s)	596
XbaI	TCTAGA	1 cut(s)	43
XceI	RCATGY	1 cut(s)	505
XspI	CTAG	4 cut(s)	29, 44, 119, 320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.