Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0002402

Physical Location & Seq

Genomic Coordinates Forward (+)

23775258 .. 23776205

Gene Structure 948 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G018430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGTTATGTAGATTGCAATATGTCAGGACACCTATCACCAAAATTCTCAATGAAAATCGTCTTGAGGGCCCAAACTTCAATGACTGGCTCCGCAATTTGAAAATTGTATTGACATTCGATAAGATCGCTTATGTCTTACAAAATGCACCCCCTCACACTCTTTTGGCTCAAGATGCAACCGATGAGCAACGTGTTGCTTATCAAAAGCATAAGGATGATGACACTGAAGCTAAATGTGTTATGCTTGCATCCATGAACTCACAACTTCAGAAGCAACATGAGAATATGGATAGCGCCAGTTCTATATTACTCCATCTCACTGAATTGTTTGGTGAAAGAAATAGAAATGTGTGCTTCATAGTAGTCAATGAGCTTGTCAAGACAAAACAATTCATAATGAACTATAATATGCAACAAATGGATCATACTCTTTCTGATCTTCTCAATATGCTGGTAACAGCTGAGAAGCAAATCAAGAAAGAGAGTGGGAGTGCGGCTATTATCGCTTCTTCTTCATCCAGTAAGTCCAAAGGTAAAGGCAAAGGGAAGAAGAAACAAGTGATAAAGCCTAAGGGAGCAGTCCAAAAGAAGAAGAAGAAGGAACAAAAGGAACCAAAAGGTATTTGTTTCTTTTGCAACAAAGATGGGCACTGGAAGAGGAATTGCAAAGCTTATCTTGCATCCTTGAAGAACAAGTCTTCAACAGAAGGTACGATCAATGTGATTGGATCAATATTTATAGTTAATAATACTTCCACTTGGATAATTGATTCAGGTGCATCCACCATGTTTGCACTTCGTTGCAGGACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Retrotran_gag_2 zf-CCHC

Protein Analysis

270

Amino Acids

30.56

Weight (kDa)

9.63

Isoelectric Point (pI)

28.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002402)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g29991
malus_domestica	MD00G1044200.v1.1
prunus_persica	Prupe.2G062600_v2.0.a1 Prupe.2G064700_v2.0.a1 Prupe.6G167800_v2.0.a1
pyrus_communis	pycom13g29530 pycom17g02500 pycom39g00040 pycom976g00080
rosa_chinensis	RchiOBHm_Chr1g0376911 RchiOBHm_Chr1g0379561 RchiOBHm_Chr2g0165661 RchiOBHm_Chr2g0176521
rosa_multiflora	Rmu_sc0000070.1_g000011 Rmu_sc0000555.1_g000020 Rmu_sc0001291.1_g000051 Rmu_sc0001306.1_g000003 Rmu_sc0005142.1_g000016 Rmu_ssc0000389.1_g000014
rosa_roxburghii	Rroxscaffold_2G00096870 Rroxscaffold_5G00384810 Rroxscaffold_6G00394930
rosa_samantha	Rh1CG138000 Rh1CG192400 Rh7BG220700
rosa_wichuraiana	Rw0G002230 Rw0G012080 Rw1G007200 Rw1G008660 Rw1G011890 Rw2G018430 Rw3G008190 Rw3G020340 Rw3G024460 Rw4G000210 Rw5G007300 Rw5G015820 Rw5G032410 Rw5G048130 Rw5G049610 Rw7G025770 Rw7G028470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	91, 494
AclWI	GGATC	2 cut(s)	429, 736
AcsI	RAATTY	1 cut(s)	42
AcuI	CTGAAG	2 cut(s)	246, 251
AfaI	GTAC	1 cut(s)	712
AflIII	ACRYGT	1 cut(s)	190
AgsI	TTSAA	4 cut(s)	79, 100, 688, 702
AluBI	AGCT	4 cut(s)	230, 373, 461, 671
AluI	AGCT	4 cut(s)	230, 373, 461, 671
AlwI	GGATC	2 cut(s)	429, 736
AoxI	GGCC	1 cut(s)	67
ApaI	GGGCCC	1 cut(s)	71
ApoI	RAATTY	1 cut(s)	42
AspLEI	GCGC	1 cut(s)	296
AspS9I	GGNCC	3 cut(s)	67, 68, 807
AsuHPI	GGTGA	2 cut(s)	28, 344
AvaII	GGWCC	1 cut(s)	807
AxyI	CCTNAGG	1 cut(s)	570
BaeGI	GKGCMC	2 cut(s)	71, 651
BanII	GRGCYC	1 cut(s)	71
BbsI	GAAGAC	1 cut(s)	690
BccI	CCATC	2 cut(s)	321, 638
BfaI	CTAG	1 cut(s)	811
BfoI	RGCGCY	1 cut(s)	297
BisI	GCNGC	1 cut(s)	495
BlsI	GCNGC	1 cut(s)	496
Bme18I	GGWCC	1 cut(s)	807
BmgT120I	GGNCC	3 cut(s)	67, 68, 807
BmiI	GGNNCC	3 cut(s)	69, 89, 612
BmsI	GCATC	4 cut(s)	163, 257, 689, 788
BpiI	GAAGAC	1 cut(s)	690
BpuEI	CTTGAG	2 cut(s)	83, 153
Bse1I	ACTGG	4 cut(s)	89, 297, 519, 656
Bse21I	CCTNAGG	1 cut(s)	570
BseGI	GGATG	5 cut(s)	220, 248, 515, 680, 779
BseMII	CTCAG	1 cut(s)	453
BseNI	ACTGG	4 cut(s)	89, 297, 519, 656
BseSI	GKGCMC	2 cut(s)	71, 651
BshFI	GGCC	1 cut(s)	69
BsnI	GGCC	1 cut(s)	69
Bsp120I	GGGCCC	1 cut(s)	67
Bsp1286I	GDGCHC	2 cut(s)	71, 651
Bsp143I	GATC	5 cut(s)	123, 421, 436, 714, 728
BspACI	CCGC	2 cut(s)	91, 494
BspANI	GGCC	1 cut(s)	69
BspCNI	CTCAG	1 cut(s)	454
BspLI	GGNNCC	3 cut(s)	69, 89, 612
BspPI	GGATC	2 cut(s)	429, 736
BsrI	ACTGG	4 cut(s)	89, 297, 519, 656
BssMI	GATC	5 cut(s)	123, 421, 436, 714, 728
Bst6I	CTCTTC	1 cut(s)	650
BstC8I	GCNNGC	1 cut(s)	246
BstDEI	CTNAG	2 cut(s)	462, 570
BstF5I	GGATG	5 cut(s)	220, 248, 515, 680, 779
BstH2I	RGCGCY	1 cut(s)	297
BstHHI	GCGC	1 cut(s)	296
BstKTI	GATC	5 cut(s)	126, 424, 439, 717, 731
BstMBI	GATC	5 cut(s)	123, 421, 436, 714, 728
BstMWI	GCNNNNNNNGC	3 cut(s)	173, 503, 677
BstSLI	GKGCMC	2 cut(s)	71, 651
BstV2I	GAAGAC	1 cut(s)	690
Bsu36I	CCTNAGG	1 cut(s)	570
BsuRI	GGCC	1 cut(s)	69
BtsCI	GGATG	5 cut(s)	220, 248, 515, 680, 779
BtsIMutI	CAGTG	3 cut(s)	222, 318, 649
Cac8I	GCNNGC	1 cut(s)	246
CfoI	GCGC	1 cut(s)	296
Cfr13I	GGNCC	3 cut(s)	67, 68, 807
Csp6I	GTAC	1 cut(s)	711
CspCI	CAANNNNNGTGG	2 cut(s)	772, 807
CviAII	CATG	3 cut(s)	253, 278, 787
CviJI	RGCY	9 cut(s)	69, 88, 167, 230, 373, 461, 497, 568, 671
CviKI_1	RGCY	9 cut(s)	69, 88, 167, 230, 373, 461, 497, 568, 671
CviQI	GTAC	1 cut(s)	711
DdeI	CTNAG	2 cut(s)	462, 570
DpnI	GATC	5 cut(s)	125, 423, 438, 716, 730
DpnII	GATC	5 cut(s)	123, 421, 436, 714, 728
Eam1104I	CTCTTC	1 cut(s)	650
EarI	CTCTTC	1 cut(s)	650
Eco24I	GRGCYC	1 cut(s)	71
Eco47I	GGWCC	1 cut(s)	807
Eco57I	CTGAAG	2 cut(s)	246, 251
Eco81I	CCTNAGG	1 cut(s)	570
EcoO109I	RGGNCCY	2 cut(s)	67, 807
EcoT38I	GRGCYC	1 cut(s)	71
FaeI	CATG	3 cut(s)	256, 281, 790
FalI	AAGNNNNNCTT	2 cut(s)	660, 692
FatI	CATG	3 cut(s)	252, 277, 786
Fnu4HI	GCNGC	1 cut(s)	495
FokI	GGATG	5 cut(s)	227, 235, 502, 667, 766
FriOI	GRGCYC	1 cut(s)	71
Fsp4HI	GCNGC	1 cut(s)	495
FspBI	CTAG	1 cut(s)	811
GlaI	GCGC	1 cut(s)	295
GluI	GCNGC	1 cut(s)	495
HaeII	RGCGCY	1 cut(s)	297
HaeIII	GGCC	1 cut(s)	69
HhaI	GCGC	1 cut(s)	296
Hin1II	CATG	3 cut(s)	256, 281, 790
Hin6I	GCGC	1 cut(s)	294
HinP1I	GCGC	1 cut(s)	294
HindIII	AAGCTT	1 cut(s)	669
HinfI	GANTC	1 cut(s)	770
HphI	GGTGA	2 cut(s)	28, 344
Hpy188I	TCNGA	2 cut(s)	270, 436
Hpy188III	TCNNGA	5 cut(s)	25, 62, 170, 379, 475
HpyAV	CCTTC	2 cut(s)	592, 701
HpyCH4IV	ACGT	1 cut(s)	190
HpyF10VI	GCNNNNNNNGC	3 cut(s)	173, 503, 677
HpyF3I	CTNAG	2 cut(s)	462, 570
HpySE526I	ACGT	1 cut(s)	190
Hsp92II	CATG	3 cut(s)	256, 281, 790
HspAI	GCGC	1 cut(s)	294
Kzo9I	GATC	5 cut(s)	123, 421, 436, 714, 728
LmnI	GCTCC	2 cut(s)	93, 575
LpnPI	CCDG	8 cut(s)	10, 70, 310, 437, 532, 637, 759, 790
LweI	GCATC	4 cut(s)	163, 257, 689, 788
MaeI	CTAG	1 cut(s)	811
MaeII	ACGT	1 cut(s)	190
MaeIII	GTNAC	1 cut(s)	454
MalI	GATC	5 cut(s)	125, 423, 438, 716, 730
MboI	GATC	5 cut(s)	123, 421, 436, 714, 728
MhlI	GDGCHC	2 cut(s)	71, 651
MluCI	AATT	7 cut(s)	42, 94, 102, 323, 389, 661, 765
MnlI	CCTC	3 cut(s)	58, 162, 651
MseI	TTAA	1 cut(s)	744
MslI	CAYNNNNRTG	1 cut(s)	213
MspA1I	CMGCKG	1 cut(s)	461
MwoI	GCNNNNNNNGC	3 cut(s)	173, 503, 677
NdeII	GATC	5 cut(s)	123, 421, 436, 714, 728
NlaIII	CATG	3 cut(s)	256, 281, 790
NlaIV	GGNNCC	3 cut(s)	69, 89, 612
PfeI	GAWTC	1 cut(s)	770
PkrI	GCNGC	1 cut(s)	496
PpuMI	RGGWCCY	1 cut(s)	807
Psp5II	RGGWCCY	1 cut(s)	807
PspN4I	GGNNCC	3 cut(s)	69, 89, 612
PspOMI	GGGCCC	1 cut(s)	67
PspPI	GGNCC	3 cut(s)	67, 68, 807
PspPPI	RGGWCCY	1 cut(s)	807
PvuII	CAGCTG	1 cut(s)	461
RsaI	GTAC	1 cut(s)	712
RsaNI	GTAC	1 cut(s)	711
RseI	CAYNNNNRTG	1 cut(s)	213
SaqAI	TTAA	1 cut(s)	744
SatI	GCNGC	1 cut(s)	495
Sau3AI	GATC	5 cut(s)	123, 421, 436, 714, 728
Sau96I	GGNCC	3 cut(s)	67, 68, 807
SduI	GDGCHC	2 cut(s)	71, 651
SfaNI	GCATC	4 cut(s)	163, 257, 689, 788
SinI	GGWCC	1 cut(s)	807
SmiMI	CAYNNNNRTG	1 cut(s)	213
SmlI	CTYRAG	2 cut(s)	62, 168
SmoI	CTYRAG	2 cut(s)	62, 168
Sse9I	AATT	7 cut(s)	42, 94, 102, 323, 389, 661, 765
SsiI	CCGC	2 cut(s)	91, 494
SspI	AATATT	1 cut(s)	735
SspMI	CTAG	1 cut(s)	811
TaiI	ACGT	1 cut(s)	193
TaqI	TCGA	1 cut(s)	117
TasI	AATT	7 cut(s)	42, 94, 102, 323, 389, 661, 765
TauI	GCSGC	1 cut(s)	497
TfiI	GAWTC	1 cut(s)	770
Tru1I	TTAA	1 cut(s)	744
Tru9I	TTAA	1 cut(s)	744
TscAI	CASTG	3 cut(s)	229, 325, 656
TspDTI	ATGAA	6 cut(s)	66, 269, 346, 382, 413, 504
TspRI	CASTG	3 cut(s)	229, 325, 656
VpaK11BI	GGWCC	1 cut(s)	807
XapI	RAATTY	1 cut(s)	42
XspI	CTAG	1 cut(s)	811

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.