Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000555.1

Orthogroup ID

OG0002402

Physical Location & Seq

Genomic Coordinates Reverse (-)

73005 .. 73421

Gene Structure 417 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000555.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

atggaacactccatttctatattactccatctcattgaattgtttggtgagagaaatagaaatgtgcgcttcacagctgtcaatgagcttgtcaagacaaaacatgtgaggggtgctcctgtgcatcaatatggtctcaaaatgataggtcatattgagcaagacctaggatttgcacttggtgcggagctagctcaagatcttcttctatcctccctagatgattcatttcctcagttcataatgaactataatatgcaacaaatggatcatactcttcctgattttctcaatatgctggtaacagctgagaagcaaattaagaaagagagtgggagtgtgaccattgtcgcttcttcttccactaagtccaaaggcaagggcaaagggaagaagaaaaaaagtggcaaaccctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Retrotran_gag_2 zf-CCHC

Protein Analysis

138

Amino Acids

15.36

Weight (kDa)

9.49

Isoelectric Point (pI)

31.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002402)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g29991
malus_domestica	MD00G1044200.v1.1
prunus_persica	Prupe.2G062600_v2.0.a1 Prupe.2G064700_v2.0.a1 Prupe.6G167800_v2.0.a1
pyrus_communis	pycom13g29530 pycom17g02500 pycom39g00040 pycom976g00080
rosa_chinensis	RchiOBHm_Chr1g0376911 RchiOBHm_Chr1g0379561 RchiOBHm_Chr2g0165661 RchiOBHm_Chr2g0176521
rosa_multiflora	Rmu_sc0000070.1_g000011 Rmu_sc0000555.1_g000020 Rmu_sc0001291.1_g000051 Rmu_sc0001306.1_g000003 Rmu_sc0005142.1_g000016 Rmu_ssc0000389.1_g000014
rosa_roxburghii	Rroxscaffold_2G00096870 Rroxscaffold_5G00384810 Rroxscaffold_6G00394930
rosa_samantha	Rh1CG138000 Rh1CG192400 Rh7BG220700
rosa_wichuraiana	Rw0G002230 Rw0G012080 Rw1G007200 Rw1G008660 Rw1G011890 Rw2G018430 Rw3G008190 Rw3G020340 Rw3G024460 Rw4G000210 Rw5G007300 Rw5G015820 Rw5G032410 Rw5G048130 Rw5G049610 Rw7G025770 Rw7G028470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	185
AclWI	GGATC	1 cut(s)	276
AdeI	CACNNNGTG	1 cut(s)	182
AflIII	ACRYGT	1 cut(s)	103
AgsI	TTSAA	1 cut(s)	38
AluBI	AGCT	5 cut(s)	77, 88, 190, 194, 308
AluI	AGCT	5 cut(s)	77, 88, 190, 194, 308
Alw21I	GWGCWC	1 cut(s)	118
Alw26I	GTCTC	1 cut(s)	140
AlwI	GGATC	1 cut(s)	276
ArsI	GACNNNNNNTTYG	2 cut(s)	155, 187
AspA2I	CCTAGG	1 cut(s)	166
AspLEI	GCGC	1 cut(s)	69
AsuHPI	GGTGA	1 cut(s)	59
AsuNHI	GCTAGC	1 cut(s)	190
AvrII	CCTAGG	1 cut(s)	166
Bbv12I	GWGCWC	1 cut(s)	118
BccI	CCATC	1 cut(s)	36
BcoDI	GTCTC	1 cut(s)	140
BfaI	CTAG	3 cut(s)	167, 191, 218
BglII	AGATCT	1 cut(s)	199
BlnI	CCTAGG	1 cut(s)	166
BmsI	GCATC	1 cut(s)	133
BmtI	GCTAGC	1 cut(s)	194
BoxI	GACNNNNGTC	1 cut(s)	347
BplI	GAGNNNNNCTC	2 cut(s)	100, 132
BpuEI	CTTGAG	1 cut(s)	180
BsaI	GGTCTC	1 cut(s)	140
BsaJI	CCNNGG	1 cut(s)	166
BseDI	CCNNGG	1 cut(s)	166
BseMII	CTCAG	2 cut(s)	248, 300
BsiHKAI	GWGCWC	1 cut(s)	118
BsmAI	GTCTC	1 cut(s)	140
Bso31I	GGTCTC	1 cut(s)	140
Bsp1286I	GDGCHC	1 cut(s)	118
Bsp143I	GATC	2 cut(s)	199, 268
BspACI	CCGC	1 cut(s)	185
BspCNI	CTCAG	2 cut(s)	247, 301
BspOI	GCTAGC	1 cut(s)	194
BspPI	GGATC	1 cut(s)	276
BspTNI	GGTCTC	1 cut(s)	140
BssECI	CCNNGG	1 cut(s)	166
BssMI	GATC	2 cut(s)	199, 268
BssT1I	CCWWGG	1 cut(s)	166
Bst6I	CTCTTC	1 cut(s)	282
BstAPI	GCANNNNNTGC	1 cut(s)	182
BstC8I	GCNNGC	1 cut(s)	192
BstDEI	CTNAG	3 cut(s)	234, 309, 366
BstHHI	GCGC	1 cut(s)	69
BstKTI	GATC	2 cut(s)	202, 271
BstMAI	GTCTC	1 cut(s)	140
BstMBI	GATC	2 cut(s)	199, 268
BstMWI	GCNNNNNNNGC	2 cut(s)	182, 191
BstNSI	RCATGY	1 cut(s)	107
BstPAI	GACNNNNGTC	1 cut(s)	347
BstX2I	RGATCY	1 cut(s)	199
BstYI	RGATCY	1 cut(s)	199
Cac8I	GCNNGC	1 cut(s)	192
CfoI	GCGC	1 cut(s)	69
CviAII	CATG	1 cut(s)	104
CviJI	RGCY	5 cut(s)	77, 88, 190, 194, 308
CviKI_1	RGCY	5 cut(s)	77, 88, 190, 194, 308
DdeI	CTNAG	3 cut(s)	234, 309, 366
DpnI	GATC	2 cut(s)	201, 270
DpnII	GATC	2 cut(s)	199, 268
DraIII	CACNNNGTG	1 cut(s)	182
Eam1104I	CTCTTC	1 cut(s)	282
EarI	CTCTTC	1 cut(s)	282
Eco130I	CCWWGG	1 cut(s)	166
Eco31I	GGTCTC	1 cut(s)	140
EcoT14I	CCWWGG	1 cut(s)	166
ErhI	CCWWGG	1 cut(s)	166
FaeI	CATG	1 cut(s)	107
FaiI	YATR	9 cut(s)	20, 105, 132, 153, 242, 252, 257, 273, 296
FalI	AAGNNNNNCTT	2 cut(s)	189, 221
FatI	CATG	1 cut(s)	103
FspBI	CTAG	3 cut(s)	167, 191, 218
GlaI	GCGC	1 cut(s)	68
HhaI	GCGC	1 cut(s)	69
Hin1II	CATG	1 cut(s)	107
Hin6I	GCGC	1 cut(s)	67
HinP1I	GCGC	1 cut(s)	67
HinfI	GANTC	1 cut(s)	224
HphI	GGTGA	1 cut(s)	59
Hpy188III	TCNNGA	3 cut(s)	94, 197, 281
HpyCH4V	TGCA	3 cut(s)	124, 176, 259
HpyF10VI	GCNNNNNNNGC	2 cut(s)	182, 191
HpyF3I	CTNAG	3 cut(s)	234, 309, 366
Hsp92II	CATG	1 cut(s)	107
HspAI	GCGC	1 cut(s)	67
Kzo9I	GATC	2 cut(s)	199, 268
LmnI	GCTCC	2 cut(s)	121, 187
LpnPI	CCDG	3 cut(s)	132, 284, 294
LweI	GCATC	1 cut(s)	133
MaeI	CTAG	3 cut(s)	167, 191, 218
MaeIII	GTNAC	2 cut(s)	301, 340
MalI	GATC	2 cut(s)	201, 270
MboI	GATC	2 cut(s)	199, 268
MboII	GAAGA	7 cut(s)	194, 197, 269, 348, 351, 403, 406
MflI	RGATCY	1 cut(s)	199
MhlI	GDGCHC	1 cut(s)	118
MluCI	AATT	2 cut(s)	38, 318
MnlI	CCTC	3 cut(s)	102, 223, 243
MseI	TTAA	1 cut(s)	321
MslI	CAYNNNNRTG	1 cut(s)	129
MspA1I	CMGCKG	2 cut(s)	77, 308
MwoI	GCNNNNNNNGC	2 cut(s)	182, 191
NdeII	GATC	2 cut(s)	199, 268
NheI	GCTAGC	1 cut(s)	190
NlaIII	CATG	1 cut(s)	107
NmuCI	GTSAC	1 cut(s)	340
NspI	RCATGY	1 cut(s)	107
PciI	ACATGT	1 cut(s)	103
PfeI	GAWTC	1 cut(s)	224
PscI	ACATGT	1 cut(s)	103
PshAI	GACNNNNGTC	1 cut(s)	347
PsuI	RGATCY	1 cut(s)	199
PvuII	CAGCTG	2 cut(s)	77, 308
RseI	CAYNNNNRTG	1 cut(s)	129
SaqAI	TTAA	1 cut(s)	321
Sau3AI	GATC	2 cut(s)	199, 268
SduI	GDGCHC	1 cut(s)	118
SetI	ASST	7 cut(s)	79, 90, 151, 168, 192, 196, 310
SfaNI	GCATC	1 cut(s)	133
SmiMI	CAYNNNNRTG	1 cut(s)	129
SmlI	CTYRAG	1 cut(s)	195
SmoI	CTYRAG	1 cut(s)	195
Sse9I	AATT	2 cut(s)	38, 318
SsiI	CCGC	1 cut(s)	185
SspMI	CTAG	3 cut(s)	167, 191, 218
StyI	CCWWGG	1 cut(s)	166
TasI	AATT	2 cut(s)	38, 318
TfiI	GAWTC	1 cut(s)	224
Tru1I	TTAA	1 cut(s)	321
Tru9I	TTAA	1 cut(s)	321
TseFI	GTSAC	1 cut(s)	340
Tsp45I	GTSAC	1 cut(s)	340
TspDTI	ATGAA	3 cut(s)	216, 229, 260
XceI	RCATGY	1 cut(s)	107
XmaJI	CCTAGG	1 cut(s)	166
XspI	CTAG	3 cut(s)	167, 191, 218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.