Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002402

Physical Location & Seq

Genomic Coordinates Forward (+)

65599926 .. 65600492

Gene Structure 567 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ60287

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGAACTATAATATGCAACAAATGGATCATACTCTTTCTGATCTTCTCAATATGCTGGTAACAGCTGAGAAGCAAATTAAGAAAGAGAGTGGGAGTGCGGCTATTATCGCTTCTTCTTCATCCAGTAAGTCCAAATGTAAAGGCAAAGGGAAGAAGAAACAAGTGATAAAGCCTAAGGGAGTAGTCCAAAAGAAGAAGAAGAAGGAACAAAAGGAACCAAAAGGTATTTGTTTCTTTTGCAACAAAGATGGGCACTGGAAGAGGAATTGCAAAGCTTATCTTGCATCCTTGAAGAACAAGTCTTCAACGGAAGGACCTAGTGGGAGCAAGGAAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Retrotran_gag_2 zf-CCHC

Protein Analysis

112

Amino Acids

12.38

Weight (kDa)

9.93

Isoelectric Point (pI)

29.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002402)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g29991
malus_domestica	MD00G1044200.v1.1
prunus_persica	Prupe.2G062600_v2.0.a1 Prupe.2G064700_v2.0.a1 Prupe.6G167800_v2.0.a1
pyrus_communis	pycom13g29530 pycom17g02500 pycom39g00040 pycom976g00080
rosa_chinensis	RchiOBHm_Chr1g0376911 RchiOBHm_Chr1g0379561 RchiOBHm_Chr2g0165661 RchiOBHm_Chr2g0176521
rosa_multiflora	Rmu_sc0000070.1_g000011 Rmu_sc0000555.1_g000020 Rmu_sc0001291.1_g000051 Rmu_sc0001306.1_g000003 Rmu_sc0005142.1_g000016 Rmu_ssc0000389.1_g000014
rosa_roxburghii	Rroxscaffold_2G00096870 Rroxscaffold_5G00384810 Rroxscaffold_6G00394930
rosa_samantha	Rh1CG138000 Rh1CG192400 Rh7BG220700
rosa_wichuraiana	Rw0G002230 Rw0G012080 Rw1G007200 Rw1G008660 Rw1G011890 Rw2G018430 Rw3G008190 Rw3G020340 Rw3G024460 Rw4G000210 Rw5G007300 Rw5G015820 Rw5G032410 Rw5G048130 Rw5G049610 Rw7G025770 Rw7G028470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	98
AclWI	GGATC	1 cut(s)	33
AgsI	TTSAA	2 cut(s)	292, 306
AluBI	AGCT	3 cut(s)	65, 275, 335
AluI	AGCT	3 cut(s)	65, 275, 335
AlwI	GGATC	1 cut(s)	33
AspS9I	GGNCC	1 cut(s)	314
AvaII	GGWCC	1 cut(s)	314
AxyI	CCTNAGG	1 cut(s)	174
BaeGI	GKGCMC	1 cut(s)	255
BbsI	GAAGAC	1 cut(s)	294
BccI	CCATC	1 cut(s)	242
BfaI	CTAG	1 cut(s)	318
BisI	GCNGC	1 cut(s)	99
BlsI	GCNGC	1 cut(s)	100
Bme18I	GGWCC	1 cut(s)	314
BmgT120I	GGNCC	1 cut(s)	314
BmiI	GGNNCC	1 cut(s)	216
BmsI	GCATC	1 cut(s)	293
BpiI	GAAGAC	1 cut(s)	294
Bse1I	ACTGG	2 cut(s)	123, 260
Bse21I	CCTNAGG	1 cut(s)	174
BseGI	GGATG	2 cut(s)	119, 284
BseMII	CTCAG	1 cut(s)	57
BseNI	ACTGG	2 cut(s)	123, 260
BseSI	GKGCMC	1 cut(s)	255
Bsp1286I	GDGCHC	1 cut(s)	255
Bsp143I	GATC	2 cut(s)	25, 40
BspACI	CCGC	1 cut(s)	98
BspCNI	CTCAG	1 cut(s)	58
BspLI	GGNNCC	1 cut(s)	216
BspPI	GGATC	1 cut(s)	33
BsrI	ACTGG	2 cut(s)	123, 260
BssMI	GATC	2 cut(s)	25, 40
Bst6I	CTCTTC	1 cut(s)	254
BstDEI	CTNAG	2 cut(s)	66, 174
BstF5I	GGATG	2 cut(s)	119, 284
BstKTI	GATC	2 cut(s)	28, 43
BstMBI	GATC	2 cut(s)	25, 40
BstMWI	GCNNNNNNNGC	2 cut(s)	107, 281
BstSLI	GKGCMC	1 cut(s)	255
BstV2I	GAAGAC	1 cut(s)	294
Bsu36I	CCTNAGG	1 cut(s)	174
BtsCI	GGATG	2 cut(s)	119, 284
BtsIMutI	CAGTG	1 cut(s)	253
Cfr13I	GGNCC	1 cut(s)	314
CviJI	RGCY	5 cut(s)	65, 101, 172, 275, 335
CviKI_1	RGCY	5 cut(s)	65, 101, 172, 275, 335
DdeI	CTNAG	2 cut(s)	66, 174
DpnI	GATC	2 cut(s)	27, 42
DpnII	GATC	2 cut(s)	25, 40
Eam1104I	CTCTTC	1 cut(s)	254
EarI	CTCTTC	1 cut(s)	254
Eco47I	GGWCC	1 cut(s)	314
Eco81I	CCTNAGG	1 cut(s)	174
EcoO109I	RGGNCCY	1 cut(s)	314
FaiI	YATR	4 cut(s)	9, 14, 30, 53
FalI	AAGNNNNNCTT	2 cut(s)	264, 296
Fnu4HI	GCNGC	1 cut(s)	99
FokI	GGATG	2 cut(s)	106, 271
Fsp4HI	GCNGC	1 cut(s)	99
FspBI	CTAG	1 cut(s)	318
GluI	GCNGC	1 cut(s)	99
HindIII	AAGCTT	2 cut(s)	273, 333
Hpy188I	TCNGA	1 cut(s)	40
HpyAV	CCTTC	2 cut(s)	196, 305
HpyCH4V	TGCA	4 cut(s)	16, 240, 270, 284
HpyF10VI	GCNNNNNNNGC	2 cut(s)	107, 281
HpyF3I	CTNAG	2 cut(s)	66, 174
Kzo9I	GATC	2 cut(s)	25, 40
LmnI	GCTCC	1 cut(s)	324
LpnPI	CCDG	3 cut(s)	41, 136, 241
LweI	GCATC	1 cut(s)	293
MaeI	CTAG	1 cut(s)	318
MaeIII	GTNAC	1 cut(s)	58
MalI	GATC	2 cut(s)	27, 42
MboI	GATC	2 cut(s)	25, 40
MhlI	GDGCHC	1 cut(s)	255
MluCI	AATT	2 cut(s)	75, 265
MnlI	CCTC	1 cut(s)	255
MseI	TTAA	2 cut(s)	78, 337
MspA1I	CMGCKG	1 cut(s)	65
MwoI	GCNNNNNNNGC	2 cut(s)	107, 281
NdeII	GATC	2 cut(s)	25, 40
NlaIV	GGNNCC	1 cut(s)	216
PkrI	GCNGC	1 cut(s)	100
PpuMI	RGGWCCY	1 cut(s)	314
Psp5II	RGGWCCY	1 cut(s)	314
PspN4I	GGNNCC	1 cut(s)	216
PspPI	GGNCC	1 cut(s)	314
PspPPI	RGGWCCY	1 cut(s)	314
PvuII	CAGCTG	1 cut(s)	65
SaqAI	TTAA	2 cut(s)	78, 337
SatI	GCNGC	1 cut(s)	99
Sau3AI	GATC	2 cut(s)	25, 40
Sau96I	GGNCC	1 cut(s)	314
SduI	GDGCHC	1 cut(s)	255
SetI	ASST	5 cut(s)	67, 226, 277, 319, 337
SfaNI	GCATC	1 cut(s)	293
SgeI	CNNG	8 cut(s)	68, 135, 173, 268, 293, 301, 310, 330
SinI	GGWCC	1 cut(s)	314
Sse9I	AATT	2 cut(s)	75, 265
SsiI	CCGC	1 cut(s)	98
SspMI	CTAG	1 cut(s)	318
TasI	AATT	2 cut(s)	75, 265
TauI	GCSGC	1 cut(s)	101
Tru1I	TTAA	2 cut(s)	78, 337
Tru9I	TTAA	2 cut(s)	78, 337
TscAI	CASTG	1 cut(s)	260
TspDTI	ATGAA	2 cut(s)	17, 108
TspGWI	ACGGA	1 cut(s)	323
TspRI	CASTG	1 cut(s)	260
VpaK11BI	GGWCC	1 cut(s)	314
XspI	CTAG	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.