gag-polypeptide of LTR copia-type
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_5g29991 |
| malus_domestica | MD00G1044200.v1.1 |
| prunus_persica | Prupe.2G062600_v2.0.a1 Prupe.2G064700_v2.0.a1 Prupe.6G167800_v2.0.a1 |
| pyrus_communis | pycom13g29530 pycom17g02500 pycom39g00040 pycom976g00080 |
| rosa_chinensis | RchiOBHm_Chr1g0376911 RchiOBHm_Chr1g0379561 RchiOBHm_Chr2g0165661 RchiOBHm_Chr2g0176521 |
| rosa_multiflora | Rmu_sc0000070.1_g000011 Rmu_sc0000555.1_g000020 Rmu_sc0001291.1_g000051 Rmu_sc0001306.1_g000003 Rmu_sc0005142.1_g000016 Rmu_ssc0000389.1_g000014 |
| rosa_roxburghii | Rroxscaffold_2G00096870 Rroxscaffold_5G00384810 Rroxscaffold_6G00394930 |
| rosa_samantha | Rh1CG138000 Rh1CG192400 Rh7BG220700 |
| rosa_wichuraiana | Rw0G002230 Rw0G012080 Rw1G007200 Rw1G008660 Rw1G011890 Rw2G018430 Rw3G008190 Rw3G020340 Rw3G024460 Rw4G000210 Rw5G007300 Rw5G015820 Rw5G032410 Rw5G048130 Rw5G049610 Rw7G025770 Rw7G028470 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 50, 205 |
| AclWI | GGATC | 1 cut(s) | 141 |
| AcoI | YGGCCR | 1 cut(s) | 206 |
| AcsI | RAATTY | 1 cut(s) | 21 |
| AgsI | TTSAA | 1 cut(s) | 26 |
| AluBI | AGCT | 3 cut(s) | 55, 59, 244 |
| AluI | AGCT | 3 cut(s) | 55, 59, 244 |
| AlwI | GGATC | 1 cut(s) | 141 |
| AoxI | GGCC | 2 cut(s) | 7, 206 |
| ApoI | RAATTY | 1 cut(s) | 21 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 20, 52 |
| AsuNHI | GCTAGC | 1 cut(s) | 55 |
| BfaI | CTAG | 3 cut(s) | 56, 74, 83 |
| BglII | AGATCT | 1 cut(s) | 64 |
| BisI | GCNGC | 1 cut(s) | 206 |
| BlsI | GCNGC | 1 cut(s) | 207 |
| BmsI | GCATC | 1 cut(s) | 37 |
| BmtI | GCTAGC | 1 cut(s) | 59 |
| BpuEI | CTTGAG | 1 cut(s) | 45 |
| BsaJI | CCNNGG | 1 cut(s) | 31 |
| BsaWI | WCCGGW | 1 cut(s) | 229 |
| BseDI | CCNNGG | 1 cut(s) | 31 |
| BseGI | GGATG | 1 cut(s) | 226 |
| BseMII | CTCAG | 1 cut(s) | 113 |
| BshFI | GGCC | 2 cut(s) | 9, 208 |
| BsiSI | CCGG | 1 cut(s) | 230 |
| BsnI | GGCC | 2 cut(s) | 9, 208 |
| Bsp143I | GATC | 3 cut(s) | 64, 133, 148 |
| BspACI | CCGC | 2 cut(s) | 50, 205 |
| BspANI | GGCC | 2 cut(s) | 9, 208 |
| BspCNI | CTCAG | 1 cut(s) | 112 |
| BspOI | GCTAGC | 1 cut(s) | 59 |
| BspPI | GGATC | 1 cut(s) | 141 |
| BssECI | CCNNGG | 1 cut(s) | 31 |
| BssMI | GATC | 3 cut(s) | 64, 133, 148 |
| BssT1I | CCWWGG | 1 cut(s) | 31 |
| Bst4CI | ACNGT | 1 cut(s) | 172 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 47 |
| BstC8I | GCNNGC | 1 cut(s) | 57 |
| BstDEI | CTNAG | 1 cut(s) | 99 |
| BstF5I | GGATG | 1 cut(s) | 226 |
| BstKTI | GATC | 3 cut(s) | 67, 136, 151 |
| BstMBI | GATC | 3 cut(s) | 64, 133, 148 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 47, 56, 214 |
| BstX2I | RGATCY | 1 cut(s) | 64 |
| BstYI | RGATCY | 1 cut(s) | 64 |
| BsuRI | GGCC | 2 cut(s) | 9, 208 |
| BtsCI | GGATG | 1 cut(s) | 226 |
| BtsIMutI | CAGTG | 1 cut(s) | 177 |
| Cac8I | GCNNGC | 1 cut(s) | 57 |
| CviJI | RGCY | 6 cut(s) | 9, 55, 59, 77, 208, 244 |
| CviKI_1 | RGCY | 6 cut(s) | 9, 55, 59, 77, 208, 244 |
| DdeI | CTNAG | 1 cut(s) | 99 |
| DpnI | GATC | 3 cut(s) | 66, 135, 150 |
| DpnII | GATC | 3 cut(s) | 64, 133, 148 |
| EaeI | YGGCCR | 1 cut(s) | 206 |
| Eco130I | CCWWGG | 1 cut(s) | 31 |
| Eco147I | AGGCCT | 1 cut(s) | 9 |
| EcoT14I | CCWWGG | 1 cut(s) | 31 |
| ErhI | CCWWGG | 1 cut(s) | 31 |
| FaiI | YATR | 5 cut(s) | 107, 117, 122, 138, 161 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 54, 86 |
| Fnu4HI | GCNGC | 1 cut(s) | 206 |
| FokI | GGATG | 1 cut(s) | 213 |
| Fsp4HI | GCNGC | 1 cut(s) | 206 |
| FspBI | CTAG | 3 cut(s) | 56, 74, 83 |
| GluI | GCNGC | 1 cut(s) | 206 |
| HaeIII | GGCC | 2 cut(s) | 9, 208 |
| HapII | CCGG | 1 cut(s) | 230 |
| HinfI | GANTC | 1 cut(s) | 89 |
| HpaII | CCGG | 1 cut(s) | 230 |
| Hpy188I | TCNGA | 1 cut(s) | 148 |
| Hpy188III | TCNNGA | 3 cut(s) | 26, 62, 186 |
| HpyCH4III | ACNGT | 1 cut(s) | 172 |
| HpyCH4V | TGCA | 2 cut(s) | 41, 124 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 47, 56, 214 |
| HpyF3I | CTNAG | 1 cut(s) | 99 |
| Kzo9I | GATC | 3 cut(s) | 64, 133, 148 |
| LmnI | GCTCC | 1 cut(s) | 52 |
| LpnPI | CCDG | 2 cut(s) | 149, 243 |
| LweI | GCATC | 1 cut(s) | 37 |
| MaeI | CTAG | 3 cut(s) | 56, 74, 83 |
| MaeIII | GTNAC | 1 cut(s) | 166 |
| MalI | GATC | 3 cut(s) | 66, 135, 150 |
| MboI | GATC | 3 cut(s) | 64, 133, 148 |
| MboII | GAAGA | 7 cut(s) | 59, 62, 143, 212, 215, 270, 273 |
| MflI | RGATCY | 1 cut(s) | 64 |
| MluCI | AATT | 1 cut(s) | 21 |
| MnlI | CCTC | 1 cut(s) | 88 |
| MspI | CCGG | 1 cut(s) | 230 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 47, 56, 214 |
| NdeII | GATC | 3 cut(s) | 64, 133, 148 |
| NheI | GCTAGC | 1 cut(s) | 55 |
| PceI | AGGCCT | 1 cut(s) | 9 |
| PfeI | GAWTC | 1 cut(s) | 89 |
| PkrI | GCNGC | 1 cut(s) | 207 |
| PsuI | RGATCY | 1 cut(s) | 64 |
| SatI | GCNGC | 1 cut(s) | 206 |
| Sau3AI | GATC | 3 cut(s) | 64, 133, 148 |
| SetI | ASST | 4 cut(s) | 33, 57, 61, 246 |
| SfaNI | GCATC | 1 cut(s) | 37 |
| SmlI | CTYRAG | 1 cut(s) | 60 |
| SmoI | CTYRAG | 1 cut(s) | 60 |
| Sse9I | AATT | 1 cut(s) | 21 |
| SseBI | AGGCCT | 1 cut(s) | 9 |
| SsiI | CCGC | 2 cut(s) | 50, 205 |
| SspMI | CTAG | 3 cut(s) | 56, 74, 83 |
| StuI | AGGCCT | 1 cut(s) | 9 |
| StyI | CCWWGG | 1 cut(s) | 31 |
| TaaI | ACNGT | 1 cut(s) | 172 |
| TasI | AATT | 1 cut(s) | 21 |
| TauI | GCSGC | 1 cut(s) | 208 |
| TfiI | GAWTC | 1 cut(s) | 89 |
| TscAI | CASTG | 1 cut(s) | 177 |
| TspDTI | ATGAA | 4 cut(s) | 81, 94, 125, 215 |
| TspRI | CASTG | 1 cut(s) | 177 |
| XapI | RAATTY | 1 cut(s) | 21 |
| XspI | CTAG | 3 cut(s) | 56, 74, 83 |