Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0002402

Physical Location & Seq

Genomic Coordinates Reverse (-)

8271909 .. 8272660

Gene Structure 752 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G062600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGACTATCGAGAAGATTGTGTATGTACTAGAGCAAGCTCCTGACATTGAACCCCCTGCTGAAGATATTTCTCAGGAAGTACGTGCTAAGTATGACAAGCACAAACAGCATGCTGCTAACATAATATCCTATCTCCAAGAGCTTTATGGAGAAGGCACACGTAATAGACGCTTCAGTACTGTATGTGAGCTTTTGAAGACCATGATGGTTAAGGGAGCTCCAGTCCACAAACATGGATTGAAGATGATAGGACTCATTGAGCACTTGGAAAGTCTTAGCAGTCCACTGGACCAAAACTTGGCAACCATCATCTTCTTTGAGTCTATTTCTGATTCCTTCTCCCAGTTTGTTATGAACTACAATATGGGGAAGATGGAGCACACATTCTCAATGCTGTTGAACATGTGTGTGACTCTGAAAAAACCTTCAAGAGAGAAGGAGGAGATGGGACCATTACTGTTTTTGAGAAGGGGAGGCATTAAGAAGAAACAGGAAGAAAGGAAAGAGGCGAATGGACAGTGTTTCCATTATAGGAAAGACGAACACTGGAAAATGAATTGCCGGTCTTACTTAGCTAGAATGAAGGACAATCGAGCTGAAGGTACAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Retrotran_gag_2 zf-CCHC

Protein Analysis

204

Amino Acids

23.58

Weight (kDa)

8.79

Isoelectric Point (pI)

53.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002402)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g29991
malus_domestica	MD00G1044200.v1.1
prunus_persica	Prupe.2G062600_v2.0.a1 Prupe.2G064700_v2.0.a1 Prupe.6G167800_v2.0.a1
pyrus_communis	pycom13g29530 pycom17g02500 pycom39g00040 pycom976g00080
rosa_chinensis	RchiOBHm_Chr1g0376911 RchiOBHm_Chr1g0379561 RchiOBHm_Chr2g0165661 RchiOBHm_Chr2g0176521
rosa_multiflora	Rmu_sc0000070.1_g000011 Rmu_sc0000555.1_g000020 Rmu_sc0001291.1_g000051 Rmu_sc0001306.1_g000003 Rmu_sc0005142.1_g000016 Rmu_ssc0000389.1_g000014
rosa_roxburghii	Rroxscaffold_2G00096870 Rroxscaffold_5G00384810 Rroxscaffold_6G00394930
rosa_samantha	Rh1CG138000 Rh1CG192400 Rh7BG220700
rosa_wichuraiana	Rw0G002230 Rw0G012080 Rw1G007200 Rw1G008660 Rw1G011890 Rw2G018430 Rw3G008190 Rw3G020340 Rw3G024460 Rw4G000210 Rw5G007300 Rw5G015820 Rw5G032410 Rw5G048130 Rw5G049610 Rw7G025770 Rw7G028470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	298
AcuI	CTGAAG	2 cut(s)	81, 157
AfaI	GTAC	4 cut(s)	27, 81, 178, 604
AfiI	CCNNNNNNNGG	1 cut(s)	298
AflIII	ACRYGT	2 cut(s)	158, 402
AgsI	TTSAA	5 cut(s)	50, 196, 241, 400, 429
AluBI	AGCT	7 cut(s)	38, 142, 190, 218, 575, 596, 608
AluI	AGCT	7 cut(s)	38, 142, 190, 218, 575, 596, 608
Alw21I	GWGCWC	3 cut(s)	220, 264, 381
ApeKI	GCWGC	1 cut(s)	113
AspS9I	GGNCC	2 cut(s)	289, 449
AvaII	GGWCC	2 cut(s)	289, 449
BanII	GRGCYC	1 cut(s)	220
BbsI	GAAGAC	1 cut(s)	203
Bbv12I	GWGCWC	3 cut(s)	220, 264, 381
BbvI	GCAGC	1 cut(s)	100
BccI	CCATC	4 cut(s)	199, 314, 367, 439
BfaI	CTAG	2 cut(s)	29, 576
BisI	GCNGC	1 cut(s)	114
BlsI	GCNGC	1 cut(s)	115
BmcAI	AGTACT	1 cut(s)	178
Bme18I	GGWCC	2 cut(s)	289, 449
BmgT120I	GGNCC	2 cut(s)	289, 449
BmiI	GGNNCC	1 cut(s)	450
BmrI	ACTGGG	1 cut(s)	337
BmuI	ACTGGG	1 cut(s)	337
BpiI	GAAGAC	1 cut(s)	203
BpmI	CTGGAG	1 cut(s)	204
BsaAI	YACGTR	2 cut(s)	83, 161
BsaXI	ACNNNNNCTCC	2 cut(s)	207, 237
Bsc4I	CCNNNNNNNGG	1 cut(s)	298
Bse118I	RCCGGY	1 cut(s)	561
Bse1I	ACTGG	4 cut(s)	221, 291, 343, 551
BseLI	CCNNNNNNNGG	1 cut(s)	298
BseMII	CTCAG	1 cut(s)	86
BseNI	ACTGG	4 cut(s)	221, 291, 343, 551
BseRI	GAGGAG	1 cut(s)	455
BseXI	GCAGC	1 cut(s)	100
BsiHKAI	GWGCWC	3 cut(s)	220, 264, 381
BsiSI	CCGG	1 cut(s)	562
BslFI	GGGAC	1 cut(s)	462
BslI	CCNNNNNNNGG	1 cut(s)	298
BsmFI	GGGAC	1 cut(s)	462
Bsp1286I	GDGCHC	3 cut(s)	220, 264, 381
BspCNI	CTCAG	1 cut(s)	85
BspLI	GGNNCC	1 cut(s)	450
BsrFI	RCCGGY	1 cut(s)	561
BsrI	ACTGG	4 cut(s)	221, 291, 343, 551
BssAI	RCCGGY	1 cut(s)	561
Bst4CI	ACNGT	3 cut(s)	181, 459, 519
BstBAI	YACGTR	2 cut(s)	83, 161
BstC8I	GCNNGC	2 cut(s)	36, 111
BstDEI	CTNAG	4 cut(s)	72, 87, 275, 571
BstMWI	GCNNNNNNNGC	1 cut(s)	106
BstNSI	RCATGY	2 cut(s)	113, 406
BstV1I	GCAGC	1 cut(s)	100
BstV2I	GAAGAC	1 cut(s)	203
BstXI	CCANNNNNNTGG	1 cut(s)	233
BtsIMutI	CAGTG	3 cut(s)	284, 524, 544
Cac8I	GCNNGC	2 cut(s)	36, 111
Cfr10I	RCCGGY	1 cut(s)	561
Cfr13I	GGNCC	2 cut(s)	289, 449
CseI	GACGC	1 cut(s)	177
Csp6I	GTAC	4 cut(s)	26, 80, 177, 603
CviAII	CATG	4 cut(s)	110, 202, 233, 403
CviJI	RGCY	7 cut(s)	38, 142, 190, 218, 575, 596, 608
CviKI_1	RGCY	7 cut(s)	38, 142, 190, 218, 575, 596, 608
CviQI	GTAC	4 cut(s)	26, 80, 177, 603
DdeI	CTNAG	4 cut(s)	72, 87, 275, 571
Ecl136II	GAGCTC	1 cut(s)	218
Eco24I	GRGCYC	1 cut(s)	220
Eco47I	GGWCC	2 cut(s)	289, 449
Eco53kI	GAGCTC	1 cut(s)	218
Eco57I	CTGAAG	2 cut(s)	81, 157
EcoICRI	GAGCTC	1 cut(s)	218
EcoT38I	GRGCYC	1 cut(s)	220
FaeI	CATG	4 cut(s)	113, 205, 236, 406
FaqI	GGGAC	1 cut(s)	462
FatI	CATG	4 cut(s)	109, 201, 232, 402
Fnu4HI	GCNGC	1 cut(s)	114
FriOI	GRGCYC	1 cut(s)	220
Fsp4HI	GCNGC	1 cut(s)	114
FspBI	CTAG	2 cut(s)	29, 576
GluI	GCNGC	1 cut(s)	114
GsuI	CTGGAG	1 cut(s)	204
HapII	CCGG	1 cut(s)	562
HgaI	GACGC	1 cut(s)	177
Hin1II	CATG	4 cut(s)	113, 205, 236, 406
HinfI	GANTC	4 cut(s)	252, 320, 332, 412
HpaII	CCGG	1 cut(s)	562
Hpy166II	GTNNAC	2 cut(s)	226, 284
Hpy188I	TCNGA	2 cut(s)	331, 417
Hpy188III	TCNNGA	4 cut(s)	10, 41, 74, 429
Hpy8I	GTNNAC	2 cut(s)	226, 284
HpyAV	CCTTC	7 cut(s)	146, 346, 430, 435, 462, 577, 593
HpyCH4III	ACNGT	3 cut(s)	181, 459, 519
HpyCH4IV	ACGT	2 cut(s)	82, 160
HpyF10VI	GCNNNNNNNGC	1 cut(s)	106
HpyF3I	CTNAG	4 cut(s)	72, 87, 275, 571
HpySE526I	ACGT	2 cut(s)	82, 160
Hsp92II	CATG	4 cut(s)	113, 205, 236, 406
LmnI	GCTCC	4 cut(s)	43, 215, 223, 376
LpnPI	CCDG	9 cut(s)	54, 59, 69, 234, 272, 356, 476, 532, 575
Lsp1109I	GCAGC	1 cut(s)	100
MaeI	CTAG	2 cut(s)	29, 576
MaeII	ACGT	2 cut(s)	82, 160
MaeIII	GTNAC	1 cut(s)	409
MboII	GAAGA	8 cut(s)	25, 74, 208, 253, 304, 382, 496, 506
MhlI	GDGCHC	3 cut(s)	220, 264, 381
MluCI	AATT	1 cut(s)	556
MlyI	GAGTC	3 cut(s)	246, 329, 406
MnlI	CCTC	3 cut(s)	433, 467, 499
MseI	TTAA	3 cut(s)	210, 480, 610
MslI	CAYNNNNRTG	2 cut(s)	231, 407
MspI	CCGG	1 cut(s)	562
MwoI	GCNNNNNNNGC	1 cut(s)	106
NlaIII	CATG	4 cut(s)	113, 205, 236, 406
NlaIV	GGNNCC	1 cut(s)	450
NmuCI	GTSAC	1 cut(s)	409
NspI	RCATGY	2 cut(s)	113, 406
PaeI	GCATGC	1 cut(s)	113
PciI	ACATGT	1 cut(s)	402
PfeI	GAWTC	1 cut(s)	332
PflMI	CCANNNNNTGG	1 cut(s)	298
PkrI	GCNGC	1 cut(s)	115
PleI	GAGTC	3 cut(s)	246, 328, 406
PpsI	GAGTC	3 cut(s)	246, 328, 406
Ppu21I	YACGTR	2 cut(s)	83, 161
PscI	ACATGT	1 cut(s)	402
Psp124BI	GAGCTC	1 cut(s)	220
PspN4I	GGNNCC	1 cut(s)	450
PspPI	GGNCC	2 cut(s)	289, 449
RsaI	GTAC	4 cut(s)	27, 81, 178, 604
RsaNI	GTAC	4 cut(s)	26, 80, 177, 603
RseI	CAYNNNNRTG	2 cut(s)	231, 407
SacI	GAGCTC	1 cut(s)	220
SaqAI	TTAA	3 cut(s)	210, 480, 610
SatI	GCNGC	1 cut(s)	114
Sau96I	GGNCC	2 cut(s)	289, 449
ScaI	AGTACT	1 cut(s)	178
SchI	GAGTC	3 cut(s)	246, 329, 406
SduI	GDGCHC	3 cut(s)	220, 264, 381
SinI	GGWCC	2 cut(s)	289, 449
SmiMI	CAYNNNNRTG	2 cut(s)	231, 407
SphI	GCATGC	1 cut(s)	113
Sse9I	AATT	1 cut(s)	556
SspMI	CTAG	2 cut(s)	29, 576
SstI	GAGCTC	1 cut(s)	220
TaaI	ACNGT	3 cut(s)	181, 459, 519
TaiI	ACGT	2 cut(s)	85, 163
TaqI	TCGA	2 cut(s)	9, 592
TasI	AATT	1 cut(s)	556
TatI	WGTACW	2 cut(s)	25, 176
TfiI	GAWTC	1 cut(s)	332
Tru1I	TTAA	3 cut(s)	210, 480, 610
Tru9I	TTAA	3 cut(s)	210, 480, 610
TscAI	CASTG	3 cut(s)	291, 524, 551
TseFI	GTSAC	1 cut(s)	409
TseI	GCWGC	1 cut(s)	113
Tsp45I	GTSAC	1 cut(s)	409
TspDTI	ATGAA	3 cut(s)	368, 569, 596
TspRI	CASTG	3 cut(s)	291, 524, 551
Van91I	CCANNNNNTGG	1 cut(s)	298
VpaK11BI	GGWCC	2 cut(s)	289, 449
XceI	RCATGY	2 cut(s)	113, 406
XcmI	CCANNNNNNNNNTGG	1 cut(s)	143
XspI	CTAG	2 cut(s)	29, 576
ZrmI	AGTACT	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.