Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0002402

Physical Location & Seq

Genomic Coordinates Forward (+)

54841353 .. 54842284

Gene Structure 932 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G032410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGTCAGGACATCCTATCACCAAAATTATTAACGAGAATCGTCTTGAGGACCCAAACTTCAATGAGTGGCTCCGCAATTTGAAAATTGTATTAACATTCGATAAGATCGCTTATGTCTTACAAAATGCACCTCCTCACACTCCATTGGCTGAAAATGCAACTGATGAGCAACGTCTTGCTTATCAAAAGCATAAGGATGATGACACGCAAGCTAAATGTGTTATGCTTGCATCCATGAACTCACAACTTCAAAAGCAACATGAGAATATGGATAACGCCTTTTCTATATATATTAGGGGTGCTCCTGTGCATAAACATGGTCTCAAAATGATAGGACTCATTGAGCAAATTCAAAACCTAGGTTTTGCACTTGATGCGGAGCTAGCTCAAGATCTTCTTCTTTCCTCCCTAGATGATTCATTTTCTCAGTTCATAATAAACTACAATATGCAGCAAATTGATCATACTGTTCCTGATCTTCTCAATATGCTGGTAACAGCTGAGAGGCATATCAAGAAAGAGAGTGGGAGTGTGGCCATTGTCTCTTGTTCTTCCACCAAGTCCAAAGGAAAGGGCAAAGGGAAAAAGAAACAAGTGGCAAAGCCTAAAGGAGCTGTCCAAAAGAAGAAGAAGAAGGAACAAAAGGAACCAAAAGGTGTTTGTTTCTTTTGCAACAAGGATTGGCATTGGAAGAGGAATTGCAAGGCTTATCTTGCATCCTTGAAGAACCAATCTTCAATAGTAGGTTTGATCAATGTGAATCAATATTTACAGTTAATAATGCTTCCACCTAGATATTTGATTCAGGTGCATCTCACCATGTTTGCACTTCGTTGCAGGACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Retrotran_gag_2 zf-CCHC

Protein Analysis

281

Amino Acids

32.01

Weight (kDa)

9.46

Isoelectric Point (pI)

33.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002402)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g29991
malus_domestica	MD00G1044200.v1.1
prunus_persica	Prupe.2G062600_v2.0.a1 Prupe.2G064700_v2.0.a1 Prupe.6G167800_v2.0.a1
pyrus_communis	pycom13g29530 pycom17g02500 pycom39g00040 pycom976g00080
rosa_chinensis	RchiOBHm_Chr1g0376911 RchiOBHm_Chr1g0379561 RchiOBHm_Chr2g0165661 RchiOBHm_Chr2g0176521
rosa_multiflora	Rmu_sc0000070.1_g000011 Rmu_sc0000555.1_g000020 Rmu_sc0001291.1_g000051 Rmu_sc0001306.1_g000003 Rmu_sc0005142.1_g000016 Rmu_ssc0000389.1_g000014
rosa_roxburghii	Rroxscaffold_2G00096870 Rroxscaffold_5G00384810 Rroxscaffold_6G00394930
rosa_samantha	Rh1CG138000 Rh1CG192400 Rh7BG220700
rosa_wichuraiana	Rw0G002230 Rw0G012080 Rw1G007200 Rw1G008660 Rw1G011890 Rw2G018430 Rw3G008190 Rw3G020340 Rw3G024460 Rw4G000210 Rw5G007300 Rw5G015820 Rw5G032410 Rw5G048130 Rw5G049610 Rw7G025770 Rw7G028470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	73, 377
AcoI	YGGCCR	1 cut(s)	534
AcsI	RAATTY	1 cut(s)	348
AgsI	TTSAA	6 cut(s)	61, 82, 251, 353, 724, 738
AluBI	AGCT	5 cut(s)	212, 382, 386, 500, 614
AluI	AGCT	5 cut(s)	212, 382, 386, 500, 614
Alw21I	GWGCWC	1 cut(s)	304
Alw26I	GTCTC	2 cut(s)	326, 547
AoxI	GGCC	1 cut(s)	534
ApeKI	GCWGC	1 cut(s)	451
ApoI	RAATTY	1 cut(s)	348
AspA2I	CCTAGG	1 cut(s)	358
AspS9I	GGNCC	2 cut(s)	49, 840
AsuHPI	GGTGA	2 cut(s)	10, 808
AsuNHI	GCTAGC	1 cut(s)	382
AvaII	GGWCC	2 cut(s)	49, 840
AvrII	CCTAGG	1 cut(s)	358
BalI	TGGCCA	1 cut(s)	536
Bbv12I	GWGCWC	1 cut(s)	304
BbvI	GCAGC	1 cut(s)	463
BclI	TGATCA	2 cut(s)	460, 750
BcoDI	GTCTC	2 cut(s)	326, 547
BfaI	CTAG	5 cut(s)	359, 383, 410, 792, 844
BglII	AGATCT	1 cut(s)	391
BisI	GCNGC	1 cut(s)	452
BlnI	CCTAGG	1 cut(s)	358
BlsI	GCNGC	1 cut(s)	453
Bme18I	GGWCC	2 cut(s)	49, 840
BmgT120I	GGNCC	2 cut(s)	49, 840
BmiI	GGNNCC	3 cut(s)	51, 71, 648
BmsI	GCATC	4 cut(s)	239, 364, 725, 820
BmtI	GCTAGC	1 cut(s)	386
BpuEI	CTTGAG	2 cut(s)	65, 372
BsaI	GGTCTC	1 cut(s)	326
BsaJI	CCNNGG	1 cut(s)	358
BseDI	CCNNGG	1 cut(s)	358
BseGI	GGATG	4 cut(s)	10, 202, 230, 716
BseMII	CTCAG	2 cut(s)	440, 492
BseRI	GAGGAG	1 cut(s)	123
BseXI	GCAGC	1 cut(s)	463
BshFI	GGCC	1 cut(s)	536
BsiHKAI	GWGCWC	1 cut(s)	304
BsmAI	GTCTC	2 cut(s)	326, 547
BsnI	GGCC	1 cut(s)	536
Bso31I	GGTCTC	1 cut(s)	326
Bsp1286I	GDGCHC	1 cut(s)	304
Bsp143I	GATC	5 cut(s)	105, 391, 460, 475, 750
BspACI	CCGC	2 cut(s)	73, 377
BspANI	GGCC	1 cut(s)	536
BspCNI	CTCAG	2 cut(s)	439, 493
BspLI	GGNNCC	3 cut(s)	51, 71, 648
BspOI	GCTAGC	1 cut(s)	386
BspTNI	GGTCTC	1 cut(s)	326
BssECI	CCNNGG	1 cut(s)	358
BssMI	GATC	5 cut(s)	105, 391, 460, 475, 750
BssT1I	CCWWGG	1 cut(s)	358
Bst4CI	ACNGT	2 cut(s)	469, 774
Bst6I	CTCTTC	1 cut(s)	686
BstAPI	GCANNNNNTGC	1 cut(s)	374
BstC8I	GCNNGC	3 cut(s)	210, 228, 384
BstDEI	CTNAG	2 cut(s)	426, 501
BstF5I	GGATG	4 cut(s)	10, 202, 230, 716
BstKTI	GATC	5 cut(s)	108, 394, 463, 478, 753
BstMAI	GTCTC	2 cut(s)	326, 547
BstMBI	GATC	5 cut(s)	105, 391, 460, 475, 750
BstMWI	GCNNNNNNNGC	4 cut(s)	155, 374, 383, 713
BstV1I	GCAGC	1 cut(s)	463
BstX2I	RGATCY	1 cut(s)	391
BstYI	RGATCY	1 cut(s)	391
BsuRI	GGCC	1 cut(s)	536
BtsCI	GGATG	4 cut(s)	10, 202, 230, 716
Cac8I	GCNNGC	3 cut(s)	210, 228, 384
Cfr13I	GGNCC	2 cut(s)	49, 840
CviAII	CATG	4 cut(s)	235, 260, 317, 820
DdeI	CTNAG	2 cut(s)	426, 501
DpnI	GATC	5 cut(s)	107, 393, 462, 477, 752
DpnII	GATC	5 cut(s)	105, 391, 460, 475, 750
EaeI	YGGCCR	1 cut(s)	534
Eam1104I	CTCTTC	1 cut(s)	686
EarI	CTCTTC	1 cut(s)	686
Eco130I	CCWWGG	1 cut(s)	358
Eco31I	GGTCTC	1 cut(s)	326
Eco47I	GGWCC	2 cut(s)	49, 840
EcoO109I	RGGNCCY	2 cut(s)	49, 840
EcoT14I	CCWWGG	1 cut(s)	358
ErhI	CCWWGG	1 cut(s)	358
FaeI	CATG	4 cut(s)	238, 263, 320, 823
FalI	AAGNNNNNCTT	2 cut(s)	381, 413
FatI	CATG	4 cut(s)	234, 259, 316, 819
FbaI	TGATCA	2 cut(s)	460, 750
Fnu4HI	GCNGC	1 cut(s)	452
FokI	GGATG	3 cut(s)	209, 217, 703
Fsp4HI	GCNGC	1 cut(s)	452
FspBI	CTAG	5 cut(s)	359, 383, 410, 792, 844
GluI	GCNGC	1 cut(s)	452
HaeIII	GGCC	1 cut(s)	536
Hin1II	CATG	4 cut(s)	238, 263, 320, 823
HinfI	GANTC	5 cut(s)	37, 336, 416, 760, 802
HphI	GGTGA	2 cut(s)	10, 808
Hpy188III	TCNNGA	5 cut(s)	6, 44, 389, 473, 514
HpyAV	CCTTC	1 cut(s)	628
HpyCH4III	ACNGT	2 cut(s)	469, 774
HpyCH4IV	ACGT	1 cut(s)	172
HpyF10VI	GCNNNNNNNGC	4 cut(s)	155, 374, 383, 713
HpyF3I	CTNAG	2 cut(s)	426, 501
HpySE526I	ACGT	1 cut(s)	172
Hsp92II	CATG	4 cut(s)	238, 263, 320, 823
Ksp22I	TGATCA	2 cut(s)	460, 750
Kzo9I	GATC	5 cut(s)	105, 391, 460, 475, 750
LmnI	GCTCC	4 cut(s)	75, 307, 379, 611
LpnPI	CCDG	5 cut(s)	318, 476, 486, 791, 823
Lsp1109I	GCAGC	1 cut(s)	463
LweI	GCATC	4 cut(s)	239, 364, 725, 820
MaeI	CTAG	5 cut(s)	359, 383, 410, 792, 844
MaeII	ACGT	1 cut(s)	172
MaeIII	GTNAC	1 cut(s)	493
MalI	GATC	5 cut(s)	107, 393, 462, 477, 752
MboI	GATC	5 cut(s)	105, 391, 460, 475, 750
MflI	RGATCY	1 cut(s)	391
MhlI	GDGCHC	1 cut(s)	304
MlsI	TGGCCA	1 cut(s)	536
MluCI	AATT	6 cut(s)	24, 76, 84, 348, 456, 697
MluNI	TGGCCA	1 cut(s)	536
MlyI	GAGTC	1 cut(s)	330
MnlI	CCTC	6 cut(s)	40, 141, 144, 415, 498, 687
Mox20I	TGGCCA	1 cut(s)	536
MscI	TGGCCA	1 cut(s)	536
MseI	TTAA	3 cut(s)	30, 92, 776
MslI	CAYNNNNRTG	2 cut(s)	195, 315
Msp20I	TGGCCA	1 cut(s)	536
MspA1I	CMGCKG	1 cut(s)	500
MwoI	GCNNNNNNNGC	4 cut(s)	155, 374, 383, 713
NdeII	GATC	5 cut(s)	105, 391, 460, 475, 750
NheI	GCTAGC	1 cut(s)	382
NlaIII	CATG	4 cut(s)	238, 263, 320, 823
NlaIV	GGNNCC	3 cut(s)	51, 71, 648
PfeI	GAWTC	4 cut(s)	37, 416, 760, 802
PkrI	GCNGC	1 cut(s)	453
PleI	GAGTC	1 cut(s)	330
PpsI	GAGTC	1 cut(s)	330
PpuMI	RGGWCCY	2 cut(s)	49, 840
Psp5II	RGGWCCY	2 cut(s)	49, 840
PspN4I	GGNNCC	3 cut(s)	51, 71, 648
PspPI	GGNCC	2 cut(s)	49, 840
PspPPI	RGGWCCY	2 cut(s)	49, 840
PsuI	RGATCY	1 cut(s)	391
PvuII	CAGCTG	1 cut(s)	500
RseI	CAYNNNNRTG	2 cut(s)	195, 315
SaqAI	TTAA	3 cut(s)	30, 92, 776
SatI	GCNGC	1 cut(s)	452
Sau3AI	GATC	5 cut(s)	105, 391, 460, 475, 750
Sau96I	GGNCC	2 cut(s)	49, 840
SchI	GAGTC	1 cut(s)	330
SduI	GDGCHC	1 cut(s)	304
SfaNI	GCATC	4 cut(s)	239, 364, 725, 820
SinI	GGWCC	2 cut(s)	49, 840
SmiMI	CAYNNNNRTG	2 cut(s)	195, 315
SmlI	CTYRAG	2 cut(s)	44, 387
SmoI	CTYRAG	2 cut(s)	44, 387
Sse9I	AATT	6 cut(s)	24, 76, 84, 348, 456, 697
SsiI	CCGC	2 cut(s)	73, 377
SspI	AATATT	1 cut(s)	767
SspMI	CTAG	5 cut(s)	359, 383, 410, 792, 844
StyI	CCWWGG	1 cut(s)	358
TaaI	ACNGT	2 cut(s)	469, 774
TaiI	ACGT	1 cut(s)	175
TaqI	TCGA	1 cut(s)	99
TasI	AATT	6 cut(s)	24, 76, 84, 348, 456, 697
TfiI	GAWTC	4 cut(s)	37, 416, 760, 802
Tru1I	TTAA	3 cut(s)	30, 92, 776
Tru9I	TTAA	3 cut(s)	30, 92, 776
TseI	GCWGC	1 cut(s)	451
TspDTI	ATGAA	3 cut(s)	251, 408, 421
VpaK11BI	GGWCC	2 cut(s)	49, 840
XapI	RAATTY	1 cut(s)	348
XmaJI	CCTAGG	1 cut(s)	358
XspI	CTAG	5 cut(s)	359, 383, 410, 792, 844

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.