Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0002402

Physical Location & Seq

Genomic Coordinates Reverse (-)

15168448 .. 15168948

Gene Structure 501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G007200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGTCAGGACATCCTATCACCAAAATTCTCAATGAAAATCGTCTTGAGGGCCCAAACTTTAATGACTGGCTCCGCAATTTGAAAATTGTATTGACATTCGATAAGATCGCTTATGTCTTACAAAATGCACCCCCTCACACTCCTTTGGCTCAAGATGCAACTGATGAGAAACGTGTTGCTTATCAAAAGCATAAGGATGATGACACTCAAGCTAAATGTCAACATGAGAATATGGATAGCGCCAGTTCTATATTACTCCATCTCACTGAATTGTTTGGTGAAAGAAATAGAAATGTGCGCTTTACAGTAGTCAATGAGCTTGTCAAGACAAAACATGTGAGGGGTGCACCTGTGCATCAACATGGTCTAAAAATGATAAGCCTTATTGAGCAAATTCAAGACCTTGGATTTGCACTTGATGCGGAGCTAGCTAGCTCAAGATCTTCATCTAACCTCCCTAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Retrotran_gag_2

Protein Analysis

154

Amino Acids

17.46

Weight (kDa)

7.1

Isoelectric Point (pI)

43.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002402)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g29991
malus_domestica	MD00G1044200.v1.1
prunus_persica	Prupe.2G062600_v2.0.a1 Prupe.2G064700_v2.0.a1 Prupe.6G167800_v2.0.a1
pyrus_communis	pycom13g29530 pycom17g02500 pycom39g00040 pycom976g00080
rosa_chinensis	RchiOBHm_Chr1g0376911 RchiOBHm_Chr1g0379561 RchiOBHm_Chr2g0165661 RchiOBHm_Chr2g0176521
rosa_multiflora	Rmu_sc0000070.1_g000011 Rmu_sc0000555.1_g000020 Rmu_sc0001291.1_g000051 Rmu_sc0001306.1_g000003 Rmu_sc0005142.1_g000016 Rmu_ssc0000389.1_g000014
rosa_roxburghii	Rroxscaffold_2G00096870 Rroxscaffold_5G00384810 Rroxscaffold_6G00394930
rosa_samantha	Rh1CG138000 Rh1CG192400 Rh7BG220700
rosa_wichuraiana	Rw0G002230 Rw0G012080 Rw1G007200 Rw1G008660 Rw1G011890 Rw2G018430 Rw3G008190 Rw3G020340 Rw3G024460 Rw4G000210 Rw5G007300 Rw5G015820 Rw5G032410 Rw5G048130 Rw5G049610 Rw7G025770 Rw7G028470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	73, 422
AcsI	RAATTY	2 cut(s)	24, 393
AflIII	ACRYGT	2 cut(s)	172, 334
AgsI	TTSAA	2 cut(s)	82, 398
AluBI	AGCT	5 cut(s)	212, 319, 427, 431, 435
AluI	AGCT	5 cut(s)	212, 319, 427, 431, 435
Alw21I	GWGCWC	1 cut(s)	349
Alw44I	GTGCAC	1 cut(s)	345
AoxI	GGCC	1 cut(s)	49
ApaI	GGGCCC	1 cut(s)	53
ApaLI	GTGCAC	1 cut(s)	345
ApoI	RAATTY	2 cut(s)	24, 393
ArsI	GACNNNNNNTTYG	2 cut(s)	392, 424
AspLEI	GCGC	2 cut(s)	242, 300
AspS9I	GGNCC	2 cut(s)	49, 50
AsuHPI	GGTGA	2 cut(s)	10, 290
AsuNHI	GCTAGC	2 cut(s)	427, 431
BaeGI	GKGCMC	2 cut(s)	53, 349
BanII	GRGCYC	1 cut(s)	53
Bbv12I	GWGCWC	1 cut(s)	349
BccI	CCATC	1 cut(s)	267
BfaI	CTAG	3 cut(s)	428, 432, 459
BfoI	RGCGCY	1 cut(s)	243
BglII	AGATCT	1 cut(s)	440
BmgT120I	GGNCC	2 cut(s)	49, 50
BmiI	GGNNCC	2 cut(s)	51, 71
BmsI	GCATC	3 cut(s)	145, 364, 409
BmtI	GCTAGC	2 cut(s)	431, 435
BpuEI	CTTGAG	4 cut(s)	65, 135, 192, 421
BsaBI	GATNNNNATC	1 cut(s)	445
BsaJI	CCNNGG	1 cut(s)	403
Bse1I	ACTGG	2 cut(s)	71, 243
Bse8I	GATNNNNATC	1 cut(s)	445
BseDI	CCNNGG	1 cut(s)	403
BseGI	GGATG	2 cut(s)	10, 202
BseJI	GATNNNNATC	1 cut(s)	445
BseNI	ACTGG	2 cut(s)	71, 243
BseSI	GKGCMC	2 cut(s)	53, 349
BshFI	GGCC	1 cut(s)	51
BsiHKAI	GWGCWC	1 cut(s)	349
BsnI	GGCC	1 cut(s)	51
Bsp120I	GGGCCC	1 cut(s)	49
Bsp1286I	GDGCHC	2 cut(s)	53, 349
Bsp143I	GATC	2 cut(s)	105, 440
BspACI	CCGC	2 cut(s)	73, 422
BspANI	GGCC	1 cut(s)	51
BspLI	GGNNCC	2 cut(s)	51, 71
BspOI	GCTAGC	2 cut(s)	431, 435
BsrI	ACTGG	2 cut(s)	71, 243
BssECI	CCNNGG	1 cut(s)	403
BssMI	GATC	2 cut(s)	105, 440
BssT1I	CCWWGG	1 cut(s)	403
Bst4CI	ACNGT	1 cut(s)	307
BstAPI	GCANNNNNTGC	1 cut(s)	419
BstC8I	GCNNGC	2 cut(s)	429, 433
BstF5I	GGATG	2 cut(s)	10, 202
BstH2I	RGCGCY	1 cut(s)	243
BstHHI	GCGC	2 cut(s)	242, 300
BstKTI	GATC	2 cut(s)	108, 443
BstMBI	GATC	2 cut(s)	105, 440
BstMWI	GCNNNNNNNGC	3 cut(s)	155, 419, 428
BstNSI	RCATGY	1 cut(s)	338
BstSLI	GKGCMC	2 cut(s)	53, 349
BstX2I	RGATCY	1 cut(s)	440
BstYI	RGATCY	1 cut(s)	440
BsuRI	GGCC	1 cut(s)	51
BtsCI	GGATG	2 cut(s)	10, 202
BtsIMutI	CAGTG	1 cut(s)	264
Cac8I	GCNNGC	2 cut(s)	429, 433
CfoI	GCGC	2 cut(s)	242, 300
Cfr13I	GGNCC	2 cut(s)	49, 50
CviAII	CATG	3 cut(s)	224, 335, 362
CviJI	RGCY	9 cut(s)	51, 70, 149, 212, 319, 381, 427, 431, 435
CviKI_1	RGCY	9 cut(s)	51, 70, 149, 212, 319, 381, 427, 431, 435
DpnI	GATC	2 cut(s)	107, 442
DpnII	GATC	2 cut(s)	105, 440
Eco130I	CCWWGG	1 cut(s)	403
Eco24I	GRGCYC	1 cut(s)	53
EcoO109I	RGGNCCY	1 cut(s)	49
EcoT14I	CCWWGG	1 cut(s)	403
EcoT38I	GRGCYC	1 cut(s)	53
ErhI	CCWWGG	1 cut(s)	403
FaeI	CATG	3 cut(s)	227, 338, 365
FaiI	YATR	7 cut(s)	114, 192, 225, 233, 251, 336, 363
FatI	CATG	3 cut(s)	223, 334, 361
FokI	GGATG	1 cut(s)	209
FriOI	GRGCYC	1 cut(s)	53
FspBI	CTAG	3 cut(s)	428, 432, 459
GlaI	GCGC	2 cut(s)	241, 299
HaeII	RGCGCY	1 cut(s)	243
HaeIII	GGCC	1 cut(s)	51
HhaI	GCGC	2 cut(s)	242, 300
Hin1II	CATG	3 cut(s)	227, 338, 365
Hin6I	GCGC	2 cut(s)	240, 298
HinP1I	GCGC	2 cut(s)	240, 298
HincII	GTYRAC	1 cut(s)	221
HindII	GTYRAC	1 cut(s)	221
HphI	GGTGA	2 cut(s)	10, 290
Hpy166II	GTNNAC	2 cut(s)	221, 347
Hpy188III	TCNNGA	6 cut(s)	6, 44, 152, 325, 398, 438
Hpy8I	GTNNAC	2 cut(s)	221, 347
HpyCH4III	ACNGT	1 cut(s)	307
HpyCH4IV	ACGT	1 cut(s)	172
HpyCH4V	TGCA	5 cut(s)	128, 158, 347, 355, 413
HpyF10VI	GCNNNNNNNGC	3 cut(s)	155, 419, 428
HpySE526I	ACGT	1 cut(s)	172
Hsp92II	CATG	3 cut(s)	227, 338, 365
HspAI	GCGC	2 cut(s)	240, 298
Kzo9I	GATC	2 cut(s)	105, 440
LmnI	GCTCC	2 cut(s)	75, 424
LpnPI	CCDG	3 cut(s)	52, 256, 363
LweI	GCATC	3 cut(s)	145, 364, 409
MaeI	CTAG	3 cut(s)	428, 432, 459
MaeII	ACGT	1 cut(s)	172
MalI	GATC	2 cut(s)	107, 442
MboI	GATC	2 cut(s)	105, 440
MboII	GAAGA	1 cut(s)	435
MflI	RGATCY	1 cut(s)	440
MhlI	GDGCHC	2 cut(s)	53, 349
MluCI	AATT	5 cut(s)	24, 76, 84, 269, 393
MnlI	CCTC	4 cut(s)	40, 144, 333, 464
MseI	TTAA	1 cut(s)	60
MslI	CAYNNNNRTG	2 cut(s)	195, 360
MwoI	GCNNNNNNNGC	3 cut(s)	155, 419, 428
NdeII	GATC	2 cut(s)	105, 440
NheI	GCTAGC	2 cut(s)	427, 431
NlaIII	CATG	3 cut(s)	227, 338, 365
NlaIV	GGNNCC	2 cut(s)	51, 71
NspI	RCATGY	1 cut(s)	338
PciI	ACATGT	1 cut(s)	334
PscI	ACATGT	1 cut(s)	334
PspN4I	GGNNCC	2 cut(s)	51, 71
PspOMI	GGGCCC	1 cut(s)	49
PspPI	GGNCC	2 cut(s)	49, 50
PsuI	RGATCY	1 cut(s)	440
RseI	CAYNNNNRTG	2 cut(s)	195, 360
SaqAI	TTAA	1 cut(s)	60
Sau3AI	GATC	2 cut(s)	105, 440
Sau96I	GGNCC	2 cut(s)	49, 50
SduI	GDGCHC	2 cut(s)	53, 349
SetI	ASST	9 cut(s)	175, 214, 321, 352, 405, 429, 433, 437, 456
SfaNI	GCATC	3 cut(s)	145, 364, 409
SmiMI	CAYNNNNRTG	2 cut(s)	195, 360
SmlI	CTYRAG	4 cut(s)	44, 150, 207, 436
SmoI	CTYRAG	4 cut(s)	44, 150, 207, 436
Sse9I	AATT	5 cut(s)	24, 76, 84, 269, 393
SsiI	CCGC	2 cut(s)	73, 422
SspMI	CTAG	3 cut(s)	428, 432, 459
StyI	CCWWGG	1 cut(s)	403
TaaI	ACNGT	1 cut(s)	307
TaiI	ACGT	1 cut(s)	175
TaqI	TCGA	1 cut(s)	99
TasI	AATT	5 cut(s)	24, 76, 84, 269, 393
Tru1I	TTAA	1 cut(s)	60
Tru9I	TTAA	1 cut(s)	60
TscAI	CASTG	1 cut(s)	271
TspDTI	ATGAA	2 cut(s)	48, 435
TspRI	CASTG	1 cut(s)	271
VneI	GTGCAC	1 cut(s)	345
XapI	RAATTY	2 cut(s)	24, 393
XceI	RCATGY	1 cut(s)	338
XspI	CTAG	3 cut(s)	428, 432, 459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.