FvH4_5g36850

Phosphate-induced protein 1 conserved region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0002144
Physical Location & Seq
Reverse (-)
27004166 .. 27005089
924 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g36850.t1

Sequence Viewer

Length: 924 bp
ATGGCTTACAGTTACCGTTTTGCCATCTGGGTCTTCTTCCTCCTCTCACTCTCCACCTTCCTCTGCCCTAGCGCAGCCACGACCCGAAAGCTCACGGCCCTCGTTAAACAACAGCCTCTGGTTCTCAAGTACCACAAGGGCCCACTTCTCGCGGGAAACGTCACCGTGAATCTCGTATGGTACGGTAGATTCTCCCCCAAGCAACGGTCAATTCTCGTTGACTTTCTTCAGTCTCTGAGCTCCGTCCACCGCCGCTCTCCACAGCCCACGGTCGCTTCGTGGTGGCACACCATTGCGGGGTACACGGGGAAACCATGCACCGTCGCTGTAGGGAATCAAATCCTCCAAGAGAGCTACTCTCTCGGGAAAACACTGACGAAAGAAAAGCTCGCGGTTTTGGCCGCAAAAGGGTGGAAGGGCGGTAAAACGACGGCGGTCAACGTCGTTTTGACTGACGGTGACGTGGCGGTGGAGGGGTTCTGCATGAGCCGGTGCGGGAACCACGCGTCGAGTCGGGGTGGGTCGGCGTACGCGTGGGTGGGGAACCCGGGGAAGCAGTGCCCGGGACAGTGCGCGTGGCCGTTTCACCAGCCGATTTACGGGCCGCAGACTCCGCCGTTAGTTTCGCCTAACGGCGACGTCGGGATAGACGGAATGGTGATCAACTTGGCGACGGTTTTGGCGGGAACGGTGACGAATCCGTTTAATAACGGGTACTTCCAGGGACCAGCAGGCGCGGGCTTGGAGGCGGTGAGCGCGTGTACCGGTATTTTCGGAAAAGGGGCGTACCCGGGTTATCCGGGGGAGGTAGTTTTGGACAAAACGACGGGCGCGAGTTACAATGCGGTGGGAATTCGTGGACGGAAGTATCTGCTTCCGGCGATGTGGGACCCCAAGACGTCCACGTGTAAAACACTCGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Phi_1

Protein Analysis

308

Amino Acids

32.75

Weight (kDa)

9.59

Isoelectric Point (pI)

34.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Phi_1 PF04674 42 - 306 1.7e-118 Phosphate-induced protein 1 conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 642, 902
AccBSI CCGCTC 1 cut(s) 255
AccII CGCG 8 cut(s) 152, 392, 506, 533, 575, 737, 758, 833
AcoI YGGCCR 2 cut(s) 399, 578
AcsI RAATTY 1 cut(s) 852
AcuI CTGAAG 1 cut(s) 212
AcvI CACGTG 1 cut(s) 906
AcyI GRCGYC 2 cut(s) 639, 899
AfaI GTAC 7 cut(s) 131, 182, 302, 530, 716, 763, 788
AfiI CCNNNNNNNGG 4 cut(s) 204, 297, 408, 599
AflIII ACRYGT 3 cut(s) 504, 531, 905
AgeI ACCGGT 1 cut(s) 764
AjiI CACGTC 1 cut(s) 463
AjnI CCWGG 1 cut(s) 720
AluBI AGCT 4 cut(s) 91, 240, 354, 388
AluI AGCT 4 cut(s) 91, 240, 354, 388
Alw21I GWGCWC 1 cut(s) 242
Alw26I GTCTC 1 cut(s) 237
AlwNI CAGNNNCTG 2 cut(s) 118, 235
Ama87I CYCGRG 4 cut(s) 362, 547, 562, 790
AoxI GGCC 5 cut(s) 96, 139, 399, 578, 602
ApaI GGGCCC 1 cut(s) 143
ApeKI GCWGC 1 cut(s) 74
ApoI RAATTY 1 cut(s) 852
AsiGI ACCGGT 1 cut(s) 764
AspLEI GCGC 5 cut(s) 74, 575, 737, 758, 833
AspS9I GGNCC 6 cut(s) 97, 139, 140, 602, 725, 889
AsuC2I CCSGG 7 cut(s) 548, 549, 563, 564, 791, 792, 801
AsuHPI GGTGA 6 cut(s) 154, 470, 578, 670, 703, 763
AvaI CYCGRG 4 cut(s) 362, 547, 562, 790
AvaII GGWCC 2 cut(s) 725, 889
BaeGI GKGCMC 2 cut(s) 143, 563
BaeI ACNNNNGTAYC 2 cut(s) 851, 884
BanII GRGCYC 2 cut(s) 143, 242
BbrPI CACGTG 1 cut(s) 906
BbsI GAAGAC 1 cut(s) 25
Bbv12I GWGCWC 1 cut(s) 242
BbvI GCAGC 1 cut(s) 86
BccI CCATC 1 cut(s) 32
BceAI ACGGC 5 cut(s) 111, 447, 565, 601, 649
BciT130I CCWGG 1 cut(s) 722
BclI TGATCA 1 cut(s) 660
BcnI CCSGG 7 cut(s) 548, 549, 563, 564, 791, 792, 801
BcoDI GTCTC 1 cut(s) 237
BfaI CTAG 1 cut(s) 69
BfmI CTRYAG 1 cut(s) 327
BisI GCNGC 4 cut(s) 75, 253, 402, 605
BlsI GCNGC 4 cut(s) 76, 254, 403, 606
Bme1390I CCNGG 8 cut(s) 548, 549, 563, 564, 722, 791, 792, 801
Bme18I GGWCC 2 cut(s) 725, 889
BmeT110I CYCGRG 4 cut(s) 362, 547, 562, 790
BmgBI CACGTC 1 cut(s) 463
BmgT120I GGNCC 6 cut(s) 97, 139, 140, 602, 725, 889
BmiI GGNNCC 6 cut(s) 141, 500, 545, 726, 890, 891
BmrFI CCNGG 8 cut(s) 548, 549, 563, 564, 722, 791, 792, 801
BoxI GACNNNNGTC 1 cut(s) 434
BpiI GAAGAC 1 cut(s) 25
BplI GAGNNNNNCTC 4 cut(s) 341, 373, 343, 375
BpuEI CTTGAG 1 cut(s) 110
BpuMI CCSGG 7 cut(s) 548, 549, 563, 564, 791, 792, 801
BsaAI YACGTR 1 cut(s) 906
BsaHI GRCGYC 2 cut(s) 639, 899
BsaJI CCNNGG 7 cut(s) 267, 547, 548, 562, 721, 790, 800
BsaWI WCCGGW 1 cut(s) 764
Bsc4I CCNNNNNNNGG 4 cut(s) 204, 297, 408, 599
Bse118I RCCGGY 2 cut(s) 489, 764
Bse3DI GCAATG 1 cut(s) 291
BseBI CCWGG 1 cut(s) 722
BseDI CCNNGG 7 cut(s) 267, 547, 548, 562, 721, 790, 800
BseLI CCNNNNNNNGG 4 cut(s) 204, 297, 408, 599
BseMI GCAATG 1 cut(s) 291
BseMII CTCAG 1 cut(s) 227
BseRI GAGGAG 1 cut(s) 32
BseSI GKGCMC 2 cut(s) 143, 563
BseXI GCAGC 1 cut(s) 86
Bsh1236I CGCG 8 cut(s) 152, 392, 506, 533, 575, 737, 758, 833
Bsh1285I CGRYCG 1 cut(s) 273
BshFI GGCC 5 cut(s) 98, 141, 401, 580, 604
BshTI ACCGGT 1 cut(s) 764
BsiEI CGRYCG 1 cut(s) 273
BsiHKAI GWGCWC 1 cut(s) 242
BsiHKCI CYCGRG 4 cut(s) 362, 547, 562, 790
BsiSI CCGG 7 cut(s) 490, 548, 563, 765, 791, 800, 878
BsiWI CGTACG 1 cut(s) 528
BslFI GGGAC 3 cut(s) 579, 738, 902
BslI CCNNNNNNNGG 4 cut(s) 204, 297, 408, 599
BsmAI GTCTC 1 cut(s) 237
BsmFI GGGAC 3 cut(s) 579, 738, 902
BsnI GGCC 5 cut(s) 98, 141, 401, 580, 604
BsoBI CYCGRG 4 cut(s) 362, 547, 562, 790
Bsp120I GGGCCC 1 cut(s) 139
Bsp1286I GDGCHC 3 cut(s) 143, 242, 563
Bsp143I GATC 1 cut(s) 660
BspANI GGCC 5 cut(s) 98, 141, 401, 580, 604
BspCNI CTCAG 1 cut(s) 228
BspFNI CGCG 8 cut(s) 152, 392, 506, 533, 575, 737, 758, 833
BspLI GGNNCC 6 cut(s) 141, 500, 545, 726, 890, 891
BsrBI CCGCTC 1 cut(s) 255
BsrDI GCAATG 1 cut(s) 291
BsrFI RCCGGY 2 cut(s) 489, 764
BssAI RCCGGY 2 cut(s) 489, 764
BssECI CCNNGG 7 cut(s) 267, 547, 548, 562, 721, 790, 800
BssMI GATC 1 cut(s) 660
BssNI GRCGYC 2 cut(s) 639, 899
Bst2UI CCWGG 1 cut(s) 722
BstACI GRCGYC 2 cut(s) 639, 899
BstBAI YACGTR 1 cut(s) 906
BstC8I GCNNGC 3 cut(s) 390, 733, 739
BstDEI CTNAG 1 cut(s) 236
BstDSI CCRYGG 1 cut(s) 267
BstFNI CGCG 8 cut(s) 152, 392, 506, 533, 575, 737, 758, 833
BstHHI GCGC 5 cut(s) 74, 575, 737, 758, 833
BstKTI GATC 1 cut(s) 663
BstMAI GTCTC 1 cut(s) 237
BstMBI GATC 1 cut(s) 660
BstMCI CGRYCG 1 cut(s) 273
BstMWI GCNNNNNNNGC 3 cut(s) 398, 613, 755
BstNI CCWGG 1 cut(s) 722
BstPAI GACNNNNGTC 1 cut(s) 434
BstSCI CCNGG 8 cut(s) 546, 547, 561, 562, 720, 789, 790, 799
BstSFI CTRYAG 1 cut(s) 327
BstSLI GKGCMC 2 cut(s) 143, 563
BstUI CGCG 8 cut(s) 152, 392, 506, 533, 575, 737, 758, 833
BstV1I GCAGC 1 cut(s) 86
BstV2I GAAGAC 1 cut(s) 25
BsuRI GGCC 5 cut(s) 98, 141, 401, 580, 604
BtgI CCRYGG 1 cut(s) 267
BtgZI GCGATG 1 cut(s) 896
BtrI CACGTC 1 cut(s) 463
BtsI GCAGTG 1 cut(s) 563
BtsIMutI CAGTG 3 cut(s) 371, 563, 575
Cac8I GCNNGC 3 cut(s) 390, 733, 739
CaiI CAGNNNCTG 2 cut(s) 118, 235
CfoI GCGC 5 cut(s) 74, 575, 737, 758, 833
Cfr10I RCCGGY 2 cut(s) 489, 764
Cfr13I GGNCC 6 cut(s) 97, 139, 140, 602, 725, 889
Cfr9I CCCGGG 3 cut(s) 547, 562, 790
CseI GACGC 1 cut(s) 495
Csp6I GTAC 7 cut(s) 130, 181, 301, 529, 715, 762, 787
CspAI ACCGGT 1 cut(s) 764
CviAII CATG 2 cut(s) 315, 484
CviQI GTAC 7 cut(s) 130, 181, 301, 529, 715, 762, 787
DdeI CTNAG 1 cut(s) 236
DpnI GATC 1 cut(s) 662
DpnII GATC 1 cut(s) 660
EaeI YGGCCR 2 cut(s) 399, 578
EciI GGCGGA 1 cut(s) 603
Ecl136II GAGCTC 1 cut(s) 240
Eco24I GRGCYC 2 cut(s) 143, 242
Eco47I GGWCC 2 cut(s) 725, 889
Eco53kI GAGCTC 1 cut(s) 240
Eco57I CTGAAG 1 cut(s) 212
Eco72I CACGTG 1 cut(s) 906
Eco88I CYCGRG 4 cut(s) 362, 547, 562, 790
EcoICRI GAGCTC 1 cut(s) 240
EcoO109I RGGNCCY 2 cut(s) 139, 889
EcoRI GAATTC 1 cut(s) 852
EcoRII CCWGG 1 cut(s) 720
EcoT38I GRGCYC 2 cut(s) 143, 242
FaeI CATG 2 cut(s) 318, 487
FaiI YATR 3 cut(s) 178, 316, 485
FaqI GGGAC 3 cut(s) 579, 738, 902
FatI CATG 2 cut(s) 314, 483
FauI CCCGC 5 cut(s) 145, 289, 488, 676, 730
FbaI TGATCA 1 cut(s) 660
Fnu4HI GCNGC 4 cut(s) 75, 253, 402, 605
FriOI GRGCYC 2 cut(s) 143, 242
Fsp4HI GCNGC 4 cut(s) 75, 253, 402, 605
FspBI CTAG 1 cut(s) 69
GlaI GCGC 5 cut(s) 73, 574, 736, 757, 832
GluI GCNGC 4 cut(s) 75, 253, 402, 605
HaeIII GGCC 5 cut(s) 98, 141, 401, 580, 604
HapII CCGG 7 cut(s) 490, 548, 563, 765, 791, 800, 878
HgaI GACGC 1 cut(s) 495
HhaI GCGC 5 cut(s) 74, 575, 737, 758, 833
Hin1I GRCGYC 2 cut(s) 639, 899
Hin1II CATG 2 cut(s) 318, 487
Hin6I GCGC 5 cut(s) 72, 573, 735, 756, 831
HinP1I GCGC 5 cut(s) 72, 573, 735, 756, 831
HincII GTYRAC 2 cut(s) 220, 439
HindII GTYRAC 2 cut(s) 220, 439
HinfI GANTC 6 cut(s) 169, 189, 334, 511, 610, 697
HpaII CCGG 7 cut(s) 490, 548, 563, 765, 791, 800, 878
HphI GGTGA 6 cut(s) 154, 470, 578, 670, 703, 763
Hpy166II GTNNAC 7 cut(s) 220, 247, 303, 439, 762, 860, 903
Hpy188I TCNGA 3 cut(s) 237, 776, 923
Hpy188III TCNNGA 2 cut(s) 364, 643
Hpy8I GTNNAC 7 cut(s) 220, 247, 303, 439, 762, 860, 903
Hpy99I CGWCG 8 cut(s) 326, 433, 446, 511, 641, 644, 676, 829
HpyAV CCTTC 2 cut(s) 67, 409
HpyCH4IV ACGT 6 cut(s) 159, 441, 462, 639, 899, 905
HpyCH4V TGCA 2 cut(s) 318, 483
HpyF10VI GCNNNNNNNGC 3 cut(s) 398, 613, 755
HpyF3I CTNAG 1 cut(s) 236
HpySE526I ACGT 6 cut(s) 159, 441, 462, 639, 899, 905
Hsp92I GRCGYC 2 cut(s) 639, 899
Hsp92II CATG 2 cut(s) 318, 487
HspAI GCGC 5 cut(s) 72, 573, 735, 756, 831
KflI GGGWCCC 1 cut(s) 889
Ksp22I TGATCA 1 cut(s) 660
Kzo9I GATC 1 cut(s) 660
LmnI GCTCC 1 cut(s) 245
Lsp1109I GCAGC 1 cut(s) 86
MaeI CTAG 1 cut(s) 69
MaeII ACGT 6 cut(s) 159, 441, 462, 639, 899, 905
MaeIII GTNAC 5 cut(s) 11, 160, 458, 691, 836
MalI GATC 1 cut(s) 662
MbiI CCGCTC 1 cut(s) 255
MboI GATC 1 cut(s) 660
MboII GAAGA 3 cut(s) 25, 28, 218
MhlI GDGCHC 3 cut(s) 143, 242, 563
MluCI AATT 2 cut(s) 210, 852
MluI ACGCGT 2 cut(s) 504, 531
MlyI GAGTC 2 cut(s) 520, 604
MnlI CCTC 9 cut(s) 50, 53, 71, 110, 126, 353, 466, 739, 799
MseI TTAA 2 cut(s) 105, 705
MspI CCGG 7 cut(s) 490, 548, 563, 765, 791, 800, 878
MspR9I CCNGG 8 cut(s) 548, 549, 563, 564, 722, 791, 792, 801
MvaI CCWGG 1 cut(s) 722
MvnI CGCG 8 cut(s) 152, 392, 506, 533, 575, 737, 758, 833
MwoI GCNNNNNNNGC 3 cut(s) 398, 613, 755
NciI CCSGG 7 cut(s) 548, 549, 563, 564, 791, 792, 801
NdeII GATC 1 cut(s) 660
NlaIII CATG 2 cut(s) 318, 487
NlaIV GGNNCC 6 cut(s) 141, 500, 545, 726, 890, 891
NmuCI GTSAC 3 cut(s) 160, 458, 691
PcsI WCGNNNNNNNCGW 4 cut(s) 156, 275, 530, 830
PfeI GAWTC 4 cut(s) 169, 189, 334, 697
Pfl23II CGTACG 1 cut(s) 528
PinAI ACCGGT 1 cut(s) 764
PkrI GCNGC 4 cut(s) 76, 254, 403, 606
PleI GAGTC 2 cut(s) 519, 604
PmaCI CACGTG 1 cut(s) 906
PmlI CACGTG 1 cut(s) 906
PpsI GAGTC 2 cut(s) 519, 604
Ppu21I YACGTR 1 cut(s) 906
PpuMI RGGWCCY 1 cut(s) 889
PshAI GACNNNNGTC 1 cut(s) 434
Psp124BI GAGCTC 1 cut(s) 242
Psp5II RGGWCCY 1 cut(s) 889
Psp6I CCWGG 1 cut(s) 720
PspCI CACGTG 1 cut(s) 906
PspGI CCWGG 1 cut(s) 720
PspLI CGTACG 1 cut(s) 528
PspN4I GGNNCC 6 cut(s) 141, 500, 545, 726, 890, 891
PspOMI GGGCCC 1 cut(s) 139
PspPI GGNCC 6 cut(s) 97, 139, 140, 602, 725, 889
PspPPI RGGWCCY 1 cut(s) 889
PstNI CAGNNNCTG 2 cut(s) 118, 235
RsaI GTAC 7 cut(s) 131, 182, 302, 530, 716, 763, 788
RsaNI GTAC 7 cut(s) 130, 181, 301, 529, 715, 762, 787
SacI GAGCTC 1 cut(s) 242
SaqAI TTAA 2 cut(s) 105, 705
SatI GCNGC 4 cut(s) 75, 253, 402, 605
Sau3AI GATC 1 cut(s) 660
Sau96I GGNCC 6 cut(s) 97, 139, 140, 602, 725, 889
SchI GAGTC 2 cut(s) 520, 604
ScrFI CCNGG 8 cut(s) 548, 549, 563, 564, 722, 791, 792, 801
SduI GDGCHC 3 cut(s) 143, 242, 563
SfcI CTRYAG 1 cut(s) 327
SinI GGWCC 2 cut(s) 725, 889
SmaI CCCGGG 3 cut(s) 549, 564, 792
SmlI CTYRAG 1 cut(s) 125
SmoI CTYRAG 1 cut(s) 125
Sse9I AATT 2 cut(s) 210, 852
SspMI CTAG 1 cut(s) 69
SstI GAGCTC 1 cut(s) 242
StyD4I CCNGG 8 cut(s) 546, 547, 561, 562, 720, 789, 790, 799
TaiI ACGT 6 cut(s) 162, 444, 465, 642, 902, 908
TaqI TCGA 1 cut(s) 509
TasI AATT 2 cut(s) 210, 852
TauI GCSGC 3 cut(s) 255, 404, 607
TfiI GAWTC 4 cut(s) 169, 189, 334, 697
Tru1I TTAA 2 cut(s) 105, 705
Tru9I TTAA 2 cut(s) 105, 705
TscAI CASTG 3 cut(s) 378, 563, 575
TseFI GTSAC 3 cut(s) 160, 458, 691
TseI GCWGC 1 cut(s) 74
Tsp45I GTSAC 3 cut(s) 160, 458, 691
TspGWI ACGGA 4 cut(s) 232, 666, 690, 877
TspMI CCCGGG 3 cut(s) 547, 562, 790
TspRI CASTG 3 cut(s) 378, 563, 575
VpaK11BI GGWCC 2 cut(s) 725, 889
XapI RAATTY 1 cut(s) 852
XmaI CCCGGG 3 cut(s) 547, 562, 790
XspI CTAG 1 cut(s) 69
ZraI GACGTC 2 cut(s) 640, 900
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.