Rh7BG446900

Phosphate-induced protein 1 conserved region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0002144
Physical Location & Seq
Forward (+)
52116312 .. 52117142
831 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG446900.1

Sequence Viewer

Length: 831 bp
ATGGCTCTGACCTACCACGGTGGCACTTTGCTCCAAGGAGACCTCCCAGTCTCTATAATCTGGTATGGAAACTTCTCACCAGCCCAGAGATCCATTGTGGCAGACTTTCTTCTCTCCCTTAATTATAACAACCCTCACAAAGATCAAAAGAGAGCTAAGCCCTCAGTAACTCCATGGTGGAATTCAGTCCAAACCTACATGAAAAAAGCCGGCCAAAAACCAACCCATGTTTCTCTTTCTACCCAACTCTCAGACCACAATTGCTCTCTGGGAAAAACCCTAAAAAAATCTCAAATCTCCGAGTTGGCCCACCGGGTCAACTCGCGCAACTCGGGGGGACTGACACTTGTACTCACTGCCCCATACGTAGCGGTTGAAGGGTTTTGCATGAGCAACTGCGGGTTTCACGACTCGAACCGGAAGTCCAACTCGGTCTTCATCTGGGTCGGGAACTCGGCGACTCAGTGCCCGGGTCAGTGCGCGTGGCCATTCCACCAACCCATCTACGGACCACAAACCCCGCCGTTGGTTGCACCCAATGCTGACGTGGGGGTGGATGGCATGGTGATAAATATCGCTACTCTTTTGGCGGGAACAGTGACAAATCCGTTTGCAAACGGGTACTACCTCGGGTCAGCGGAGGCACCGCTAGAGGTGGCCTCCGCTTGTACCGGGGTGTATGGAAAGGGGGCGTACCCGGGTTACGCGGGGGAGCTGCTGGTGGACTCGAGCAGTGGCACGAGCTACAATGCGGTGGGCGTGAATGGGAGGAAGTACCTCTTGCCTGCTTTGTTTGATCCTTATACTTCTCAGTGTGAGGCCATTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Phi_1

Protein Analysis

276

Amino Acids

29.54

Weight (kDa)

8.41

Isoelectric Point (pI)

31.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Phi_1 PF04674 3 - 274 6.7e-120 Phosphate-induced protein 1 conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 126
AasI GACNNNNNNGTC 1 cut(s) 47
AccB1I GGYRCC 1 cut(s) 643
AccII CGCG 3 cut(s) 325, 482, 707
AciI CCGC 9 cut(s) 371, 399, 521, 590, 638, 647, 663, 707, 752
AclWI GGATC 2 cut(s) 84, 791
AcoI YGGCCR 2 cut(s) 211, 485
AcsI RAATTY 1 cut(s) 181
AfaI GTAC 5 cut(s) 351, 623, 670, 695, 776
AfiI CCNNNNNNNGG 2 cut(s) 506, 526
AgsI TTSAA 1 cut(s) 377
AjiI CACGTC 1 cut(s) 547
AjuI GAANNNNNNNTTGG 4 cut(s) 214, 246, 419, 451
AloI GAACNNNNNNTCC 2 cut(s) 407, 439
AluBI AGCT 3 cut(s) 155, 715, 744
AluI AGCT 3 cut(s) 155, 715, 744
Alw26I GTCTC 2 cut(s) 33, 55
AlwI GGATC 2 cut(s) 84, 791
Ama87I CYCGRG 5 cut(s) 331, 469, 629, 697, 727
AoxI GGCC 5 cut(s) 211, 306, 485, 657, 819
ApeKI GCWGC 1 cut(s) 715
ApoI RAATTY 1 cut(s) 181
ArsI GACNNNNNNTTYG 2 cut(s) 407, 439
AspLEI GCGC 2 cut(s) 327, 482
AspS9I GGNCC 2 cut(s) 307, 509
AsuC2I CCSGG 6 cut(s) 314, 470, 471, 673, 698, 699
AsuHPI GGTGA 2 cut(s) 69, 577
AvaI CYCGRG 5 cut(s) 331, 469, 629, 697, 727
AvaII GGWCC 1 cut(s) 509
BaeGI GKGCMC 1 cut(s) 470
BalI TGGCCA 1 cut(s) 487
BanI GGYRCC 1 cut(s) 643
BarI GAAGNNNNNNTAC 2 cut(s) 56, 88
BauI CACGAG 1 cut(s) 739
BbsI GAAGAC 1 cut(s) 427
BbvI GCAGC 1 cut(s) 702
BccI CCATC 2 cut(s) 509, 551
BceAI ACGGC 1 cut(s) 508
BcnI CCSGG 6 cut(s) 314, 470, 471, 673, 698, 699
BcoDI GTCTC 2 cut(s) 33, 55
BfaI CTAG 1 cut(s) 650
BisI GCNGC 1 cut(s) 716
BlpI GCTNAGC 1 cut(s) 156
BlsI GCNGC 1 cut(s) 717
Bme1390I CCNGG 6 cut(s) 314, 470, 471, 673, 698, 699
Bme18I GGWCC 1 cut(s) 509
BmeT110I CYCGRG 5 cut(s) 331, 469, 629, 697, 727
BmgBI CACGTC 1 cut(s) 547
BmgT120I GGNCC 2 cut(s) 307, 509
BmiI GGNNCC 1 cut(s) 645
BmrFI CCNGG 6 cut(s) 314, 470, 471, 673, 698, 699
BmrI ACTGGG 1 cut(s) 41
BmuI ACTGGG 1 cut(s) 41
BpiI GAAGAC 1 cut(s) 427
BplI GAGNNNNNCTC 2 cut(s) 644, 676
Bpu1102I GCTNAGC 1 cut(s) 156
BpuMI CCSGG 6 cut(s) 314, 470, 471, 673, 698, 699
BsaAI YACGTR 1 cut(s) 367
BsaBI GATNNNNATC 1 cut(s) 572
BsaI GGTCTC 1 cut(s) 33
BsaJI CCNNGG 7 cut(s) 16, 34, 173, 469, 628, 672, 697
BsaWI WCCGGW 1 cut(s) 417
Bsc4I CCNNNNNNNGG 2 cut(s) 506, 526
Bse118I RCCGGY 1 cut(s) 209
Bse1I ACTGG 1 cut(s) 47
Bse8I GATNNNNATC 1 cut(s) 572
BseDI CCNNGG 7 cut(s) 16, 34, 173, 469, 628, 672, 697
BseGI GGATG 1 cut(s) 562
BseJI GATNNNNATC 1 cut(s) 572
BseLI CCNNNNNNNGG 2 cut(s) 506, 526
BseMII CTCAG 4 cut(s) 177, 264, 476, 824
BseNI ACTGG 1 cut(s) 47
BseSI GKGCMC 1 cut(s) 470
BseXI GCAGC 1 cut(s) 702
Bsh1236I CGCG 3 cut(s) 325, 482, 707
BshFI GGCC 5 cut(s) 213, 308, 487, 659, 821
BshNI GGYRCC 1 cut(s) 643
BsiHKCI CYCGRG 5 cut(s) 331, 469, 629, 697, 727
BsiSI CCGG 6 cut(s) 210, 313, 418, 470, 672, 698
BslFI GGGAC 1 cut(s) 351
BslI CCNNNNNNNGG 2 cut(s) 506, 526
BsmAI GTCTC 2 cut(s) 33, 55
BsmFI GGGAC 1 cut(s) 351
BsnI GGCC 5 cut(s) 213, 308, 487, 659, 821
Bso31I GGTCTC 1 cut(s) 33
BsoBI CYCGRG 5 cut(s) 331, 469, 629, 697, 727
Bsp1286I GDGCHC 1 cut(s) 470
Bsp143I GATC 3 cut(s) 89, 142, 796
Bsp1720I GCTNAGC 1 cut(s) 156
Bsp19I CCATGG 1 cut(s) 173
BspACI CCGC 9 cut(s) 371, 399, 521, 590, 638, 647, 663, 707, 752
BspANI GGCC 5 cut(s) 213, 308, 487, 659, 821
BspCNI CTCAG 4 cut(s) 176, 263, 475, 823
BspFNI CGCG 3 cut(s) 325, 482, 707
BspLI GGNNCC 1 cut(s) 645
BspPI GGATC 2 cut(s) 84, 791
BspT107I GGYRCC 1 cut(s) 643
BspTNI GGTCTC 1 cut(s) 33
BsrFI RCCGGY 1 cut(s) 209
BsrI ACTGG 1 cut(s) 47
BssAI RCCGGY 1 cut(s) 209
BssECI CCNNGG 7 cut(s) 16, 34, 173, 469, 628, 672, 697
BssMI GATC 3 cut(s) 89, 142, 796
BssSI CACGAG 1 cut(s) 739
BssT1I CCWWGG 2 cut(s) 34, 173
Bst2BI CACGAG 1 cut(s) 739
Bst4CI ACNGT 2 cut(s) 20, 598
BstAPI GCANNNNNTGC 1 cut(s) 539
BstBAI YACGTR 1 cut(s) 367
BstC8I GCNNGC 2 cut(s) 211, 786
BstDEI CTNAG 5 cut(s) 156, 163, 250, 462, 810
BstDSI CCRYGG 2 cut(s) 16, 173
BstF5I GGATG 1 cut(s) 562
BstFNI CGCG 3 cut(s) 325, 482, 707
BstHHI GCGC 2 cut(s) 327, 482
BstKTI GATC 3 cut(s) 92, 145, 799
BstMAI GTCTC 2 cut(s) 33, 55
BstMBI GATC 3 cut(s) 89, 142, 796
BstMWI GCNNNNNNNGC 1 cut(s) 539
BstSCI CCNGG 6 cut(s) 312, 468, 469, 671, 696, 697
BstSLI GKGCMC 1 cut(s) 470
BstSNI TACGTA 1 cut(s) 367
BstUI CGCG 3 cut(s) 325, 482, 707
BstV1I GCAGC 1 cut(s) 702
BstV2I GAAGAC 1 cut(s) 427
BstX2I RGATCY 1 cut(s) 89
BstYI RGATCY 1 cut(s) 89
BsuRI GGCC 5 cut(s) 213, 308, 487, 659, 821
BtgI CCRYGG 2 cut(s) 16, 173
BtrI CACGTC 1 cut(s) 547
BtsCI GGATG 1 cut(s) 562
BtsI GCAGTG 2 cut(s) 354, 739
BtsIMutI CAGTG 6 cut(s) 354, 470, 482, 603, 739, 818
Cac8I GCNNGC 2 cut(s) 211, 786
CfoI GCGC 2 cut(s) 327, 482
Cfr10I RCCGGY 1 cut(s) 209
Cfr13I GGNCC 2 cut(s) 307, 509
Cfr9I CCCGGG 2 cut(s) 469, 697
Csp6I GTAC 5 cut(s) 350, 622, 669, 694, 775
CviAII CATG 5 cut(s) 174, 199, 227, 388, 562
CviQI GTAC 5 cut(s) 350, 622, 669, 694, 775
DdeI CTNAG 5 cut(s) 156, 163, 250, 462, 810
DpnI GATC 3 cut(s) 91, 144, 798
DpnII GATC 3 cut(s) 89, 142, 796
DrdI GACNNNNNNGTC 1 cut(s) 47
DseDI GACNNNNNNGTC 1 cut(s) 47
EaeI YGGCCR 2 cut(s) 211, 485
Eco105I TACGTA 1 cut(s) 367
Eco130I CCWWGG 2 cut(s) 34, 173
Eco31I GGTCTC 1 cut(s) 33
Eco47I GGWCC 1 cut(s) 509
Eco88I CYCGRG 5 cut(s) 331, 469, 629, 697, 727
EcoRI GAATTC 1 cut(s) 181
EcoT14I CCWWGG 2 cut(s) 34, 173
ErhI CCWWGG 2 cut(s) 34, 173
FaeI CATG 5 cut(s) 177, 202, 230, 391, 565
FalI AAGNNNNNCTT 2 cut(s) 764, 796
FaqI GGGAC 1 cut(s) 351
FatI CATG 5 cut(s) 173, 198, 226, 387, 561
FauI CCCGC 4 cut(s) 392, 528, 583, 700
Fnu4HI GCNGC 1 cut(s) 716
FokI GGATG 1 cut(s) 569
Fsp4HI GCNGC 1 cut(s) 716
FspBI CTAG 1 cut(s) 650
GlaI GCGC 2 cut(s) 326, 481
GluI GCNGC 1 cut(s) 716
HaeIII GGCC 5 cut(s) 213, 308, 487, 659, 821
HapII CCGG 6 cut(s) 210, 313, 418, 470, 672, 698
HhaI GCGC 2 cut(s) 327, 482
Hin1II CATG 5 cut(s) 177, 202, 230, 391, 565
Hin6I GCGC 2 cut(s) 325, 480
HinP1I GCGC 2 cut(s) 325, 480
HincII GTYRAC 1 cut(s) 319
HindII GTYRAC 1 cut(s) 319
HinfI GANTC 3 cut(s) 410, 460, 725
HpaII CCGG 6 cut(s) 210, 313, 418, 470, 672, 698
HphI GGTGA 2 cut(s) 69, 577
Hpy166II GTNNAC 2 cut(s) 319, 724
Hpy188I TCNGA 3 cut(s) 9, 253, 301
Hpy188III TCNNGA 2 cut(s) 407, 448
Hpy8I GTNNAC 2 cut(s) 319, 724
HpyAV CCTTC 1 cut(s) 371
HpyCH4III ACNGT 2 cut(s) 20, 598
HpyCH4IV ACGT 2 cut(s) 366, 546
HpyCH4V TGCA 3 cut(s) 387, 533, 614
HpyF10VI GCNNNNNNNGC 1 cut(s) 539
HpyF3I CTNAG 5 cut(s) 156, 163, 250, 462, 810
HpySE526I ACGT 2 cut(s) 366, 546
Hsp92II CATG 5 cut(s) 177, 202, 230, 391, 565
HspAI GCGC 2 cut(s) 325, 480
KroI GCCGGC 1 cut(s) 209
KroNI GCCGGC 1 cut(s) 211
Kzo9I GATC 3 cut(s) 89, 142, 796
LmnI GCTCC 2 cut(s) 36, 712
Lsp1109I GCAGC 1 cut(s) 702
MaeI CTAG 1 cut(s) 650
MaeII ACGT 2 cut(s) 366, 546
MaeIII GTNAC 3 cut(s) 166, 598, 701
MalI GATC 3 cut(s) 91, 144, 798
MboI GATC 3 cut(s) 89, 142, 796
MboII GAAGA 2 cut(s) 101, 427
MfeI CAATTG 1 cut(s) 259
MflI RGATCY 1 cut(s) 89
MhlI GDGCHC 1 cut(s) 470
MlsI TGGCCA 1 cut(s) 487
MluCI AATT 3 cut(s) 121, 181, 259
MluNI TGGCCA 1 cut(s) 487
MlyI GAGTC 3 cut(s) 404, 454, 719
MmeI TCCRAC 1 cut(s) 450
Mox20I TGGCCA 1 cut(s) 487
MroNI GCCGGC 1 cut(s) 209
MscI TGGCCA 1 cut(s) 487
MseI TTAA 1 cut(s) 120
Msp20I TGGCCA 1 cut(s) 487
MspA1I CMGCKG 1 cut(s) 638
MspI CCGG 6 cut(s) 210, 313, 418, 470, 672, 698
MspR9I CCNGG 6 cut(s) 314, 470, 471, 673, 698, 699
MunI CAATTG 1 cut(s) 259
MvnI CGCG 3 cut(s) 325, 482, 707
MwoI GCNNNNNNNGC 1 cut(s) 539
NaeI GCCGGC 1 cut(s) 211
NciI CCSGG 6 cut(s) 314, 470, 471, 673, 698, 699
NcoI CCATGG 1 cut(s) 173
NdeII GATC 3 cut(s) 89, 142, 796
NgoMIV GCCGGC 1 cut(s) 209
NlaIII CATG 5 cut(s) 177, 202, 230, 391, 565
NlaIV GGNNCC 1 cut(s) 645
NmeAIII GCCGAG 1 cut(s) 434
NmuCI GTSAC 1 cut(s) 598
PaeR7I CTCGAG 1 cut(s) 727
PdiI GCCGGC 1 cut(s) 211
PkrI GCNGC 1 cut(s) 717
PleI GAGTC 3 cut(s) 404, 454, 719
PpsI GAGTC 3 cut(s) 404, 454, 719
Ppu21I YACGTR 1 cut(s) 367
PsiI TTATAA 1 cut(s) 126
PspN4I GGNNCC 1 cut(s) 645
PspPI GGNCC 2 cut(s) 307, 509
PspXI VCTCGAGB 1 cut(s) 727
PsuI RGATCY 1 cut(s) 89
RsaI GTAC 5 cut(s) 351, 623, 670, 695, 776
RsaNI GTAC 5 cut(s) 350, 622, 669, 694, 775
SaqAI TTAA 1 cut(s) 120
SatI GCNGC 1 cut(s) 716
Sau3AI GATC 3 cut(s) 89, 142, 796
Sau96I GGNCC 2 cut(s) 307, 509
SchI GAGTC 3 cut(s) 404, 454, 719
ScrFI CCNGG 6 cut(s) 314, 470, 471, 673, 698, 699
SduI GDGCHC 1 cut(s) 470
Sfr274I CTCGAG 1 cut(s) 727
SinI GGWCC 1 cut(s) 509
SlaI CTCGAG 1 cut(s) 727
SmaI CCCGGG 2 cut(s) 471, 699
SmlI CTYRAG 1 cut(s) 727
SmoI CTYRAG 1 cut(s) 727
SnaBI TACGTA 1 cut(s) 367
Sse9I AATT 3 cut(s) 121, 181, 259
SsiI CCGC 9 cut(s) 371, 399, 521, 590, 638, 647, 663, 707, 752
SspMI CTAG 1 cut(s) 650
StyD4I CCNGG 6 cut(s) 312, 468, 469, 671, 696, 697
StyI CCWWGG 2 cut(s) 34, 173
TaaI ACNGT 2 cut(s) 20, 598
TaiI ACGT 2 cut(s) 369, 549
TaqI TCGA 2 cut(s) 413, 728
TaqII GACCGA 1 cut(s) 421
TasI AATT 3 cut(s) 121, 181, 259
TatI WGTACW 1 cut(s) 349
Tru1I TTAA 1 cut(s) 120
Tru9I TTAA 1 cut(s) 120
TscAI CASTG 6 cut(s) 361, 470, 482, 603, 739, 818
TseFI GTSAC 1 cut(s) 598
TseI GCWGC 1 cut(s) 715
Tsp45I GTSAC 1 cut(s) 598
TspDTI ATGAA 2 cut(s) 215, 427
TspGWI ACGGA 2 cut(s) 522, 597
TspMI CCCGGG 2 cut(s) 469, 697
TspRI CASTG 6 cut(s) 361, 470, 482, 603, 739, 818
VpaK11BI GGWCC 1 cut(s) 509
XapI RAATTY 1 cut(s) 181
XcmI CCANNNNNNNNNTGG 1 cut(s) 544
XhoI CTCGAG 1 cut(s) 727
XmaI CCCGGG 2 cut(s) 469, 697
XspI CTAG 1 cut(s) 650
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.