Rroxscaffold_3G00222000

Phosphate-induced protein 1 conserved region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0002144
Physical Location & Seq
Reverse (-)
4999464 .. 5001826
2363 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00222000.1

Sequence Viewer

Length: 1038 bp
ATGGCTCTGACCTATCATGGTGGCACTTTGCTCCAAGGAGACCTCCGAGTCTCTATACTCTGGTATGGAAACTTCTCACCAGCCCAGAAATCCACTGTGGCAGACTTTCTTCTCTCCCTTAAAAACAACCCTCACAAAAATCAAAAGACAGCTAAACCGGTACCTTCAGTCACTCAATGGTGGAACTCAGTCGAAACCTACATGAAAAAAGCCGGCCAAAAACCAACCCATGTTTCTCTTTCTACCCAACTCTCAGACCACAACTGCTCTCTGGGAAAAACCCTAAAAAAATCTCAAATCTCAGAGTTAGCCCACCGGGTCAACTCGCCCAACTCGGGTGGATTGACACTTGTACTCACTGCCCCATATGTAGCGGTCGAAGGGTTTTGCATGAGCAACTGCGGGTTTCACGACTCGAACCGGAAGTCGAACTCGGTTTTCATCTGGGTTGGGAACTCGGCAACTCAGTGCCCGGGTCAGTGCGCGTGGCCATTCCACCAACCCATCTACGGACCACAAACCCCGCCGTTGGTTGCACCCAATGCTGACGTGGGGGTGGATGGCATGGTGGTAAATATCGCTACTCTTTTTGGCGGGAACAGTGACAAATCCGTTTGCAAACGGGTACTACCTCGGGTCAGCGGAGTCGCCGCTAGAGGTGGCCTCCGCTTGTACCGGGGTGTATGGAAAAGGGGCGTACCCGGGTTACGCGGGGGAGCTGCTGGTGGACTCGAGCATGTGAGGCCATTGTGTGACAGTGTCACACTAGACCCCTTGCTTTTCATTATTTCATATGCTGATGATGTTGATATGGTAGCTTGTAATGTGAGCGCAGGAGAGGTAGAGGCCTACGACGAGGGGGAGGAAGCGGAGGACGAGAAGTTGGAGGTTGGGATCGGAGGACTGGAAGGTGTCATAGAGCCAGTGTATAGGTTGTTGTTGCCAGCTCCGGAGTTGGGTTCTTTGAGGAGGGAGGAGGCTTCAGAGGATGTGTGGGGGTCGTGGAGGAGGGAGCGACCGGTGGTGTGGGAGGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Phi_1

Protein Analysis

345

Amino Acids

37.4

Weight (kDa)

6.46

Isoelectric Point (pI)

41.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Phi_1 PF04674 3 - 199 4.6e-76 Phosphate-induced protein 1 conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 47
Acc65I GGTACC 1 cut(s) 160
AccB1I GGYRCC 1 cut(s) 160
AccII CGCG 2 cut(s) 485, 711
AccIII TCCGGA 1 cut(s) 949
AciI CCGC 9 cut(s) 374, 402, 524, 594, 642, 651, 667, 711, 869
AclWI GGATC 1 cut(s) 902
AcoI YGGCCR 2 cut(s) 214, 488
AcuI CTGAAG 2 cut(s) 150, 966
AfaI GTAC 5 cut(s) 162, 354, 627, 674, 699
AfiI CCNNNNNNNGG 4 cut(s) 335, 509, 529, 956
AgeI ACCGGT 2 cut(s) 157, 1018
AjiI CACGTC 1 cut(s) 550
AjuI GAANNNNNNNTTGG 2 cut(s) 217, 249
AluBI AGCT 4 cut(s) 152, 719, 818, 947
AluI AGCT 4 cut(s) 152, 719, 818, 947
Alw26I GTCTC 2 cut(s) 33, 55
AlwI GGATC 1 cut(s) 902
Ama87I CYCGRG 5 cut(s) 334, 472, 633, 701, 731
Aor13HI TCCGGA 1 cut(s) 949
AoxI GGCC 5 cut(s) 214, 488, 661, 743, 846
ApeKI GCWGC 1 cut(s) 719
ArsI GACNNNNNNTTYG 2 cut(s) 410, 442
AsiGI ACCGGT 2 cut(s) 157, 1018
Asp718I GGTACC 1 cut(s) 160
AspLEI GCGC 2 cut(s) 485, 833
AspS9I GGNCC 1 cut(s) 512
AsuC2I CCSGG 6 cut(s) 317, 473, 474, 677, 702, 703
AsuHPI GGTGA 1 cut(s) 69
AvaI CYCGRG 5 cut(s) 334, 472, 633, 701, 731
AvaII GGWCC 1 cut(s) 512
BaeGI GKGCMC 1 cut(s) 473
BalI TGGCCA 1 cut(s) 490
BanI GGYRCC 1 cut(s) 160
BarI GAAGNNNNNNTAC 2 cut(s) 56, 88
BbvI GCAGC 1 cut(s) 706
BccI CCATC 2 cut(s) 512, 554
BceAI ACGGC 1 cut(s) 511
BcnI CCSGG 6 cut(s) 317, 473, 474, 677, 702, 703
BcoDI GTCTC 2 cut(s) 33, 55
BfaI CTAG 2 cut(s) 654, 767
BisI GCNGC 2 cut(s) 651, 720
BlsI GCNGC 2 cut(s) 652, 721
Bme1390I CCNGG 6 cut(s) 317, 473, 474, 677, 702, 703
Bme18I GGWCC 1 cut(s) 512
BmeT110I CYCGRG 5 cut(s) 334, 472, 633, 701, 731
BmgBI CACGTC 1 cut(s) 550
BmgT120I GGNCC 1 cut(s) 512
BmiI GGNNCC 1 cut(s) 162
BmrFI CCNGG 6 cut(s) 317, 473, 474, 677, 702, 703
BplI GAGNNNNNCTC 2 cut(s) 648, 680
BpuMI CCSGG 6 cut(s) 317, 473, 474, 677, 702, 703
BsaI GGTCTC 1 cut(s) 33
BsaJI CCNNGG 5 cut(s) 34, 472, 632, 676, 701
BsaWI WCCGGW 4 cut(s) 157, 420, 949, 1018
Bsc4I CCNNNNNNNGG 4 cut(s) 335, 509, 529, 956
Bse118I RCCGGY 3 cut(s) 157, 212, 1018
Bse1I ACTGG 2 cut(s) 909, 923
BseAI TCCGGA 1 cut(s) 949
BseDI CCNNGG 5 cut(s) 34, 472, 632, 676, 701
BseGI GGATG 2 cut(s) 565, 994
BseLI CCNNNNNNNGG 4 cut(s) 335, 509, 529, 956
BseMII CTCAG 4 cut(s) 201, 267, 315, 479
BseNI ACTGG 2 cut(s) 909, 923
BseRI GAGGAG 3 cut(s) 982, 989, 1021
BseSI GKGCMC 1 cut(s) 473
BseXI GCAGC 1 cut(s) 706
Bsh1236I CGCG 2 cut(s) 485, 711
Bsh1285I CGRYCG 2 cut(s) 378, 1019
BshFI GGCC 5 cut(s) 216, 490, 663, 745, 848
BshNI GGYRCC 1 cut(s) 160
BshTI ACCGGT 2 cut(s) 157, 1018
BsiEI CGRYCG 2 cut(s) 378, 1019
BsiHKCI CYCGRG 5 cut(s) 334, 472, 633, 701, 731
BsiSI CCGG 9 cut(s) 158, 213, 316, 421, 473, 676, 702, 950, 1019
BslI CCNNNNNNNGG 4 cut(s) 335, 509, 529, 956
BsmAI GTCTC 2 cut(s) 33, 55
BsnI GGCC 5 cut(s) 216, 490, 663, 745, 848
Bso31I GGTCTC 1 cut(s) 33
BsoBI CYCGRG 5 cut(s) 334, 472, 633, 701, 731
Bsp1286I GDGCHC 1 cut(s) 473
Bsp13I TCCGGA 1 cut(s) 949
Bsp143I GATC 1 cut(s) 894
BspACI CCGC 9 cut(s) 374, 402, 524, 594, 642, 651, 667, 711, 869
BspANI GGCC 5 cut(s) 216, 490, 663, 745, 848
BspCNI CTCAG 4 cut(s) 200, 266, 314, 478
BspEI TCCGGA 1 cut(s) 949
BspFNI CGCG 2 cut(s) 485, 711
BspLI GGNNCC 1 cut(s) 162
BspPI GGATC 1 cut(s) 902
BspT107I GGYRCC 1 cut(s) 160
BspTNI GGTCTC 1 cut(s) 33
BsrFI RCCGGY 3 cut(s) 157, 212, 1018
BsrI ACTGG 2 cut(s) 909, 923
BssAI RCCGGY 3 cut(s) 157, 212, 1018
BssECI CCNNGG 5 cut(s) 34, 472, 632, 676, 701
BssMI GATC 1 cut(s) 894
BssT1I CCWWGG 1 cut(s) 34
Bst4CI ACNGT 3 cut(s) 97, 602, 758
BstAPI GCANNNNNTGC 1 cut(s) 542
BstC8I GCNNGC 2 cut(s) 214, 945
BstDEI CTNAG 4 cut(s) 187, 253, 301, 465
BstF5I GGATG 2 cut(s) 565, 994
BstFNI CGCG 2 cut(s) 485, 711
BstHHI GCGC 2 cut(s) 485, 833
BstKTI GATC 1 cut(s) 897
BstMAI GTCTC 2 cut(s) 33, 55
BstMBI GATC 1 cut(s) 894
BstMCI CGRYCG 2 cut(s) 378, 1019
BstMWI GCNNNNNNNGC 2 cut(s) 542, 742
BstNSI RCATGY 1 cut(s) 740
BstSCI CCNGG 6 cut(s) 315, 471, 472, 675, 700, 701
BstSLI GKGCMC 1 cut(s) 473
BstUI CGCG 2 cut(s) 485, 711
BstV1I GCAGC 1 cut(s) 706
BsuRI GGCC 5 cut(s) 216, 490, 663, 745, 848
BtrI CACGTC 1 cut(s) 550
BtsCI GGATG 2 cut(s) 565, 994
BtsI GCAGTG 1 cut(s) 357
BtsIMutI CAGTG 7 cut(s) 93, 357, 473, 485, 607, 763, 930
Cac8I GCNNGC 2 cut(s) 214, 945
CfoI GCGC 2 cut(s) 485, 833
Cfr10I RCCGGY 3 cut(s) 157, 212, 1018
Cfr13I GGNCC 1 cut(s) 512
Cfr9I CCCGGG 2 cut(s) 472, 701
Csp6I GTAC 5 cut(s) 161, 353, 626, 673, 698
CspAI ACCGGT 2 cut(s) 157, 1018
CspCI CAANNNNNGTGG 2 cut(s) 319, 354
CviAII CATG 6 cut(s) 17, 202, 230, 391, 565, 737
CviQI GTAC 5 cut(s) 161, 353, 626, 673, 698
DdeI CTNAG 4 cut(s) 187, 253, 301, 465
DpnI GATC 1 cut(s) 896
DpnII GATC 1 cut(s) 894
DrdI GACNNNNNNGTC 1 cut(s) 47
DseDI GACNNNNNNGTC 1 cut(s) 47
EaeI YGGCCR 2 cut(s) 214, 488
Eco130I CCWWGG 1 cut(s) 34
Eco147I AGGCCT 1 cut(s) 848
Eco31I GGTCTC 1 cut(s) 33
Eco47I GGWCC 1 cut(s) 512
Eco57I CTGAAG 2 cut(s) 150, 966
Eco88I CYCGRG 5 cut(s) 334, 472, 633, 701, 731
EcoT14I CCWWGG 1 cut(s) 34
ErhI CCWWGG 1 cut(s) 34
FaeI CATG 6 cut(s) 20, 205, 233, 394, 568, 740
FatI CATG 6 cut(s) 16, 201, 229, 390, 564, 736
FauI CCCGC 4 cut(s) 395, 531, 587, 704
FauNDI CATATG 2 cut(s) 367, 793
Fnu4HI GCNGC 2 cut(s) 651, 720
FokI GGATG 2 cut(s) 572, 1001
Fsp4HI GCNGC 2 cut(s) 651, 720
FspBI CTAG 2 cut(s) 654, 767
GlaI GCGC 2 cut(s) 484, 832
GluI GCNGC 2 cut(s) 651, 720
HaeIII GGCC 5 cut(s) 216, 490, 663, 745, 848
HapII CCGG 9 cut(s) 158, 213, 316, 421, 473, 676, 702, 950, 1019
HhaI GCGC 2 cut(s) 485, 833
Hin1II CATG 6 cut(s) 20, 205, 233, 394, 568, 740
Hin6I GCGC 2 cut(s) 483, 831
HinP1I GCGC 2 cut(s) 483, 831
HincII GTYRAC 1 cut(s) 322
HindII GTYRAC 1 cut(s) 322
HinfI GANTC 4 cut(s) 48, 413, 645, 729
HpaII CCGG 9 cut(s) 158, 213, 316, 421, 473, 676, 702, 950, 1019
HphI GGTGA 1 cut(s) 69
Hpy166II GTNNAC 2 cut(s) 322, 728
Hpy188I TCNGA 6 cut(s) 9, 47, 256, 304, 899, 985
Hpy188III TCNNGA 2 cut(s) 410, 950
Hpy8I GTNNAC 2 cut(s) 322, 728
Hpy99I CGWCG 1 cut(s) 857
HpyAV CCTTC 3 cut(s) 174, 374, 902
HpyCH4III ACNGT 3 cut(s) 97, 602, 758
HpyCH4IV ACGT 1 cut(s) 549
HpyCH4V TGCA 3 cut(s) 390, 536, 618
HpyF10VI GCNNNNNNNGC 2 cut(s) 542, 742
HpyF3I CTNAG 4 cut(s) 187, 253, 301, 465
HpySE526I ACGT 1 cut(s) 549
Hsp92II CATG 6 cut(s) 20, 205, 233, 394, 568, 740
HspAI GCGC 2 cut(s) 483, 831
Kpn2I TCCGGA 1 cut(s) 949
KpnI GGTACC 1 cut(s) 164
KroI GCCGGC 1 cut(s) 212
KroNI GCCGGC 1 cut(s) 214
Kzo9I GATC 1 cut(s) 894
LmnI GCTCC 4 cut(s) 36, 716, 952, 1012
Lsp1109I GCAGC 1 cut(s) 706
MaeI CTAG 2 cut(s) 654, 767
MaeII ACGT 1 cut(s) 549
MaeIII GTNAC 5 cut(s) 169, 602, 705, 752, 760
MalI GATC 1 cut(s) 896
MboI GATC 1 cut(s) 894
MboII GAAGA 1 cut(s) 101
MhlI GDGCHC 1 cut(s) 473
MlsI TGGCCA 1 cut(s) 490
MluNI TGGCCA 1 cut(s) 490
MlyI GAGTC 4 cut(s) 57, 407, 654, 723
MmeI TCCRAC 1 cut(s) 864
Mox20I TGGCCA 1 cut(s) 490
MroI TCCGGA 1 cut(s) 949
MroNI GCCGGC 1 cut(s) 212
MscI TGGCCA 1 cut(s) 490
MseI TTAA 1 cut(s) 120
Msp20I TGGCCA 1 cut(s) 490
MspA1I CMGCKG 1 cut(s) 642
MspI CCGG 9 cut(s) 158, 213, 316, 421, 473, 676, 702, 950, 1019
MspR9I CCNGG 6 cut(s) 317, 473, 474, 677, 702, 703
MvnI CGCG 2 cut(s) 485, 711
MwoI GCNNNNNNNGC 2 cut(s) 542, 742
NaeI GCCGGC 1 cut(s) 214
NciI CCSGG 6 cut(s) 317, 473, 474, 677, 702, 703
NdeI CATATG 2 cut(s) 367, 793
NdeII GATC 1 cut(s) 894
NgoMIV GCCGGC 1 cut(s) 212
NlaIII CATG 6 cut(s) 20, 205, 233, 394, 568, 740
NlaIV GGNNCC 1 cut(s) 162
NmeAIII GCCGAG 1 cut(s) 437
NmuCI GTSAC 4 cut(s) 169, 602, 752, 760
NspI RCATGY 1 cut(s) 740
PaeR7I CTCGAG 1 cut(s) 731
PceI AGGCCT 1 cut(s) 848
PdiI GCCGGC 1 cut(s) 214
PflFI GACNNNGTC 1 cut(s) 758
PinAI ACCGGT 2 cut(s) 157, 1018
PkrI GCNGC 2 cut(s) 652, 721
PleI GAGTC 4 cut(s) 56, 407, 653, 723
PpsI GAGTC 4 cut(s) 56, 407, 653, 723
PspN4I GGNNCC 1 cut(s) 162
PspPI GGNCC 1 cut(s) 512
PspXI VCTCGAGB 1 cut(s) 731
PsyI GACNNNGTC 1 cut(s) 758
RsaI GTAC 5 cut(s) 162, 354, 627, 674, 699
RsaNI GTAC 5 cut(s) 161, 353, 626, 673, 698
SaqAI TTAA 1 cut(s) 120
SatI GCNGC 2 cut(s) 651, 720
Sau3AI GATC 1 cut(s) 894
Sau96I GGNCC 1 cut(s) 512
SchI GAGTC 4 cut(s) 57, 407, 654, 723
ScrFI CCNGG 6 cut(s) 317, 473, 474, 677, 702, 703
SduI GDGCHC 1 cut(s) 473
Sfr274I CTCGAG 1 cut(s) 731
SinI GGWCC 1 cut(s) 512
SlaI CTCGAG 1 cut(s) 731
SmaI CCCGGG 2 cut(s) 474, 703
SmlI CTYRAG 1 cut(s) 731
SmoI CTYRAG 1 cut(s) 731
SseBI AGGCCT 1 cut(s) 848
SsiI CCGC 9 cut(s) 374, 402, 524, 594, 642, 651, 667, 711, 869
SspMI CTAG 2 cut(s) 654, 767
StuI AGGCCT 1 cut(s) 848
StyD4I CCNGG 6 cut(s) 315, 471, 472, 675, 700, 701
StyI CCWWGG 1 cut(s) 34
TaaI ACNGT 3 cut(s) 97, 602, 758
TaiI ACGT 1 cut(s) 552
TaqI TCGA 5 cut(s) 192, 378, 416, 428, 732
TatI WGTACW 1 cut(s) 352
TauI GCSGC 1 cut(s) 653
Tru1I TTAA 1 cut(s) 120
Tru9I TTAA 1 cut(s) 120
TscAI CASTG 7 cut(s) 100, 364, 473, 485, 607, 763, 930
TseFI GTSAC 4 cut(s) 169, 602, 752, 760
TseI GCWGC 1 cut(s) 719
Tsp45I GTSAC 4 cut(s) 169, 602, 752, 760
TspDTI ATGAA 4 cut(s) 218, 430, 772, 780
TspGWI ACGGA 2 cut(s) 525, 601
TspMI CCCGGG 2 cut(s) 472, 701
TspRI CASTG 7 cut(s) 100, 364, 473, 485, 607, 763, 930
Tth111I GACNNNGTC 1 cut(s) 758
VpaK11BI GGWCC 1 cut(s) 512
XceI RCATGY 1 cut(s) 740
XcmI CCANNNNNNNNNTGG 1 cut(s) 547
XhoI CTCGAG 1 cut(s) 731
XmaI CCCGGG 2 cut(s) 472, 701
XspI CTAG 2 cut(s) 654, 767
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.