RLG00000000839

Phosphate-induced protein 1 conserved region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0002144
Physical Location & Seq
Reverse (-)
6420667 .. 6421614
948 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000839

Sequence Viewer

Length: 948 bp
ATGGGCTCCTCCCAATTTTCTAAACCAGTAGCTCGTCTTCTTGTTCTTCTTCAATTTCTCTTAACAAGTAATGTGTGTATTGGAGCAAGAAAGCTGACGTCACTGTACCAACCTCCGCCCATGGCTTTGACCTATCATGGTGGCACTTTGCTCCAAGGAGACCTCCCAGTCTCTATACTCTGGTATGGAAACTTCTCACCAGCCCAGAAATCCACTGTGGCAGACTTTCTTCTCTCCCTTAAAAACAACCCTCACAAAAATCAAAAGACAGCTAAACCTTCAGTCACTCAATGGTGGAACTCAGTCGAAACCTACATGAAAAAAGCCGGCCAAAAACCAACCCATGTTTCTCTTTCTACCCAACTCTCAGACCACAACTGTTCTCTAGGCAAAACCCTAAAAAAATTTCAAATCTCCGAGTTGGCCCACCGGGTCAACTCGCCCAACTCGGGTGGATTGACACTTGTACTCACTGCCCCAGATGTAGCGGTCGAAGGGTTTTGCATGAGCAACTGCGGGTTTCACGACTCGAACCGGAAGTTGAACTCGGTTTTCATCTGGGTCGGGAACTCGGCAACTCAGTGCCCGGGTCAGTGCGCGTGGCCATTCCACCAACCCATCTACGGACCCCAAACCCCGCCGTTGGTTGCACCCAATGCTGACGTGGGGGTGGATGGCATGGTGGTAAATATCGCTACTCTTCTGGCGGGAACAGTGACAAATCCGTTTGCAAACGGGTACTACCTCGGGTCAGCGGAGGCACCATTAGAGGCGGCCTCCGCTTGTACCGGGGTGTACGGAAAGGGGGCATACCCGGGTTATGCAGGGAAGCTGCTGGTGGATTCGAGTAGTGGCGCAAGCTACAATGCGGTGGGCGTGAATGGGAGAAAGTACCTCTTGCCTGCTTTGTTTGATCCTTATACTTCTCAGTGTGAGACCGTAGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Phi_1

Protein Analysis

316

Amino Acids

33.61

Weight (kDa)

8.93

Isoelectric Point (pI)

29.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Phi_1 PF04674 43 - 313 5.6e-121 Phosphate-induced protein 1 conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 167
AatII GACGTC 1 cut(s) 101
AccB1I GGYRCC 1 cut(s) 760
AccII CGCG 1 cut(s) 599
AciI CCGC 9 cut(s) 116, 488, 516, 638, 707, 755, 773, 780, 869
AclWI GGATC 1 cut(s) 908
AcoI YGGCCR 2 cut(s) 328, 602
AcsI RAATTY 1 cut(s) 404
AcuI CTGAAG 1 cut(s) 264
AcyI GRCGYC 1 cut(s) 98
AfaI GTAC 6 cut(s) 107, 468, 740, 787, 797, 893
AfiI CCNNNNNNNGG 3 cut(s) 449, 623, 643
AgsI TTSAA 3 cut(s) 53, 410, 544
AjiI CACGTC 1 cut(s) 664
AjuI GAANNNNNNNTTGG 2 cut(s) 331, 363
AluBI AGCT 5 cut(s) 32, 94, 272, 832, 861
AluI AGCT 5 cut(s) 32, 94, 272, 832, 861
Alw26I GTCTC 3 cut(s) 153, 175, 929
AlwI GGATC 1 cut(s) 908
Ama87I CYCGRG 4 cut(s) 448, 586, 746, 814
AoxI GGCC 4 cut(s) 328, 423, 602, 774
ApeKI GCWGC 1 cut(s) 832
ApoI RAATTY 1 cut(s) 404
AspLEI GCGC 2 cut(s) 599, 857
AspS9I GGNCC 2 cut(s) 424, 626
AsuC2I CCSGG 6 cut(s) 431, 587, 588, 790, 815, 816
AsuHPI GGTGA 1 cut(s) 189
AvaI CYCGRG 4 cut(s) 448, 586, 746, 814
AvaII GGWCC 1 cut(s) 626
BaeGI GKGCMC 1 cut(s) 587
BalI TGGCCA 1 cut(s) 604
BanI GGYRCC 1 cut(s) 760
BanII GRGCYC 1 cut(s) 8
BarI GAAGNNNNNNTAC 4 cut(s) 21, 53, 176, 208
BbsI GAAGAC 1 cut(s) 29
BbvI GCAGC 1 cut(s) 819
BccI CCATC 2 cut(s) 626, 668
BceAI ACGGC 1 cut(s) 625
BcnI CCSGG 6 cut(s) 431, 587, 588, 790, 815, 816
BcoDI GTCTC 3 cut(s) 153, 175, 929
BfaI CTAG 1 cut(s) 386
BisI GCNGC 2 cut(s) 774, 833
BlsI GCNGC 2 cut(s) 775, 834
Bme1390I CCNGG 6 cut(s) 431, 587, 588, 790, 815, 816
Bme18I GGWCC 1 cut(s) 626
BmeT110I CYCGRG 4 cut(s) 448, 586, 746, 814
BmgBI CACGTC 1 cut(s) 664
BmgT120I GGNCC 2 cut(s) 424, 626
BmiI GGNNCC 3 cut(s) 7, 628, 762
BmrFI CCNGG 6 cut(s) 431, 587, 588, 790, 815, 816
BmrI ACTGGG 1 cut(s) 161
BmuI ACTGGG 1 cut(s) 161
BpiI GAAGAC 1 cut(s) 29
BplI GAGNNNNNCTC 2 cut(s) 761, 793
BpuMI CCSGG 6 cut(s) 431, 587, 588, 790, 815, 816
BsaHI GRCGYC 1 cut(s) 98
BsaI GGTCTC 2 cut(s) 153, 929
BsaJI CCNNGG 6 cut(s) 120, 154, 586, 745, 789, 814
BsaWI WCCGGW 1 cut(s) 534
Bsc4I CCNNNNNNNGG 3 cut(s) 449, 623, 643
Bse118I RCCGGY 1 cut(s) 326
Bse1I ACTGG 2 cut(s) 26, 167
BseDI CCNNGG 6 cut(s) 120, 154, 586, 745, 789, 814
BseGI GGATG 1 cut(s) 679
BseLI CCNNNNNNNGG 3 cut(s) 449, 623, 643
BseMII CTCAG 4 cut(s) 315, 381, 593, 941
BseNI ACTGG 2 cut(s) 26, 167
BseSI GKGCMC 1 cut(s) 587
BseXI GCAGC 1 cut(s) 819
Bsh1236I CGCG 1 cut(s) 599
Bsh1285I CGRYCG 1 cut(s) 492
BshFI GGCC 4 cut(s) 330, 425, 604, 776
BshNI GGYRCC 1 cut(s) 760
BsiEI CGRYCG 1 cut(s) 492
BsiHKCI CYCGRG 4 cut(s) 448, 586, 746, 814
BsiSI CCGG 6 cut(s) 327, 430, 535, 587, 789, 815
BslI CCNNNNNNNGG 3 cut(s) 449, 623, 643
BsmAI GTCTC 3 cut(s) 153, 175, 929
BsnI GGCC 4 cut(s) 330, 425, 604, 776
Bso31I GGTCTC 2 cut(s) 153, 929
BsoBI CYCGRG 4 cut(s) 448, 586, 746, 814
Bsp1286I GDGCHC 2 cut(s) 8, 587
Bsp143I GATC 1 cut(s) 913
Bsp19I CCATGG 1 cut(s) 120
BspACI CCGC 9 cut(s) 116, 488, 516, 638, 707, 755, 773, 780, 869
BspANI GGCC 4 cut(s) 330, 425, 604, 776
BspCNI CTCAG 4 cut(s) 314, 380, 592, 940
BspFNI CGCG 1 cut(s) 599
BspLI GGNNCC 3 cut(s) 7, 628, 762
BspPI GGATC 1 cut(s) 908
BspT107I GGYRCC 1 cut(s) 760
BspTNI GGTCTC 2 cut(s) 153, 929
BsrFI RCCGGY 1 cut(s) 326
BsrI ACTGG 2 cut(s) 26, 167
BssAI RCCGGY 1 cut(s) 326
BssECI CCNNGG 6 cut(s) 120, 154, 586, 745, 789, 814
BssMI GATC 1 cut(s) 913
BssNI GRCGYC 1 cut(s) 98
BssT1I CCWWGG 2 cut(s) 120, 154
Bst4CI ACNGT 5 cut(s) 105, 217, 380, 715, 940
Bst6I CTCTTC 1 cut(s) 705
BstACI GRCGYC 1 cut(s) 98
BstAPI GCANNNNNTGC 1 cut(s) 656
BstC8I GCNNGC 3 cut(s) 328, 859, 903
BstDEI CTNAG 4 cut(s) 301, 367, 579, 927
BstDSI CCRYGG 1 cut(s) 120
BstF5I GGATG 1 cut(s) 679
BstFNI CGCG 1 cut(s) 599
BstHHI GCGC 2 cut(s) 599, 857
BstKTI GATC 1 cut(s) 916
BstMAI GTCTC 3 cut(s) 153, 175, 929
BstMBI GATC 1 cut(s) 913
BstMCI CGRYCG 1 cut(s) 492
BstMWI GCNNNNNNNGC 2 cut(s) 656, 779
BstSCI CCNGG 6 cut(s) 429, 585, 586, 788, 813, 814
BstSLI GKGCMC 1 cut(s) 587
BstUI CGCG 1 cut(s) 599
BstV1I GCAGC 1 cut(s) 819
BstV2I GAAGAC 1 cut(s) 29
BsuRI GGCC 4 cut(s) 330, 425, 604, 776
BtgI CCRYGG 1 cut(s) 120
BtrI CACGTC 1 cut(s) 664
BtsCI GGATG 1 cut(s) 679
BtsI GCAGTG 1 cut(s) 471
BtsIMutI CAGTG 7 cut(s) 101, 213, 471, 587, 599, 720, 935
Cac8I GCNNGC 3 cut(s) 328, 859, 903
CfoI GCGC 2 cut(s) 599, 857
Cfr10I RCCGGY 1 cut(s) 326
Cfr13I GGNCC 2 cut(s) 424, 626
Cfr9I CCCGGG 2 cut(s) 586, 814
Csp6I GTAC 6 cut(s) 106, 467, 739, 786, 796, 892
CspCI CAANNNNNGTGG 2 cut(s) 433, 468
CviAII CATG 6 cut(s) 121, 137, 316, 344, 505, 679
CviQI GTAC 6 cut(s) 106, 467, 739, 786, 796, 892
DdeI CTNAG 4 cut(s) 301, 367, 579, 927
DpnI GATC 1 cut(s) 915
DpnII GATC 1 cut(s) 913
DrdI GACNNNNNNGTC 1 cut(s) 167
DseDI GACNNNNNNGTC 1 cut(s) 167
EaeI YGGCCR 2 cut(s) 328, 602
Eam1104I CTCTTC 1 cut(s) 705
EarI CTCTTC 1 cut(s) 705
EciI GGCGGA 1 cut(s) 105
Eco130I CCWWGG 2 cut(s) 120, 154
Eco24I GRGCYC 1 cut(s) 8
Eco31I GGTCTC 2 cut(s) 153, 929
Eco47I GGWCC 1 cut(s) 626
Eco57I CTGAAG 1 cut(s) 264
Eco88I CYCGRG 4 cut(s) 448, 586, 746, 814
EcoT14I CCWWGG 2 cut(s) 120, 154
EcoT38I GRGCYC 1 cut(s) 8
ErhI CCWWGG 2 cut(s) 120, 154
FaeI CATG 6 cut(s) 124, 140, 319, 347, 508, 682
FalI AAGNNNNNCTT 2 cut(s) 881, 913
FatI CATG 6 cut(s) 120, 136, 315, 343, 504, 678
FauI CCCGC 3 cut(s) 509, 645, 700
Fnu4HI GCNGC 2 cut(s) 774, 833
FokI GGATG 1 cut(s) 686
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 2 cut(s) 774, 833
FspBI CTAG 1 cut(s) 386
GlaI GCGC 2 cut(s) 598, 856
GluI GCNGC 2 cut(s) 774, 833
HaeIII GGCC 4 cut(s) 330, 425, 604, 776
HapII CCGG 6 cut(s) 327, 430, 535, 587, 789, 815
HhaI GCGC 2 cut(s) 599, 857
Hin1I GRCGYC 1 cut(s) 98
Hin1II CATG 6 cut(s) 124, 140, 319, 347, 508, 682
Hin6I GCGC 2 cut(s) 597, 855
HinP1I GCGC 2 cut(s) 597, 855
HincII GTYRAC 1 cut(s) 436
HindII GTYRAC 1 cut(s) 436
HinfI GANTC 2 cut(s) 527, 842
HpaII CCGG 6 cut(s) 327, 430, 535, 587, 789, 815
HphI GGTGA 1 cut(s) 189
Hpy166II GTNNAC 2 cut(s) 436, 796
Hpy188I TCNGA 2 cut(s) 370, 418
Hpy188III TCNNGA 2 cut(s) 524, 565
Hpy8I GTNNAC 2 cut(s) 436, 796
HpyAV CCTTC 2 cut(s) 288, 488
HpyCH4III ACNGT 5 cut(s) 105, 217, 380, 715, 940
HpyCH4IV ACGT 2 cut(s) 98, 663
HpyCH4V TGCA 4 cut(s) 504, 650, 731, 824
HpyF10VI GCNNNNNNNGC 2 cut(s) 656, 779
HpyF3I CTNAG 4 cut(s) 301, 367, 579, 927
HpySE526I ACGT 2 cut(s) 98, 663
Hsp92I GRCGYC 1 cut(s) 98
Hsp92II CATG 6 cut(s) 124, 140, 319, 347, 508, 682
HspAI GCGC 2 cut(s) 597, 855
KroI GCCGGC 1 cut(s) 326
KroNI GCCGGC 1 cut(s) 328
Kzo9I GATC 1 cut(s) 913
LmnI GCTCC 3 cut(s) 11, 83, 156
Lsp1109I GCAGC 1 cut(s) 819
MaeI CTAG 1 cut(s) 386
MaeII ACGT 2 cut(s) 98, 663
MaeIII GTNAC 3 cut(s) 99, 283, 715
MalI GATC 1 cut(s) 915
MboI GATC 1 cut(s) 913
MboII GAAGA 5 cut(s) 29, 38, 41, 221, 692
MhlI GDGCHC 2 cut(s) 8, 587
MlsI TGGCCA 1 cut(s) 604
MluCI AATT 3 cut(s) 14, 53, 404
MluNI TGGCCA 1 cut(s) 604
MlyI GAGTC 1 cut(s) 521
MnlI CCTC 9 cut(s) 19, 123, 173, 261, 751, 755, 763, 787, 905
Mox20I TGGCCA 1 cut(s) 604
MroNI GCCGGC 1 cut(s) 326
MscI TGGCCA 1 cut(s) 604
MseI TTAA 2 cut(s) 62, 240
Msp20I TGGCCA 1 cut(s) 604
MspA1I CMGCKG 1 cut(s) 755
MspI CCGG 6 cut(s) 327, 430, 535, 587, 789, 815
MspR9I CCNGG 6 cut(s) 431, 587, 588, 790, 815, 816
MvnI CGCG 1 cut(s) 599
MwoI GCNNNNNNNGC 2 cut(s) 656, 779
NaeI GCCGGC 1 cut(s) 328
NciI CCSGG 6 cut(s) 431, 587, 588, 790, 815, 816
NcoI CCATGG 1 cut(s) 120
NdeII GATC 1 cut(s) 913
NgoMIV GCCGGC 1 cut(s) 326
NlaIII CATG 6 cut(s) 124, 140, 319, 347, 508, 682
NlaIV GGNNCC 3 cut(s) 7, 628, 762
NmeAIII GCCGAG 1 cut(s) 551
NmuCI GTSAC 3 cut(s) 99, 283, 715
PdiI GCCGGC 1 cut(s) 328
PfeI GAWTC 1 cut(s) 842
PkrI GCNGC 2 cut(s) 775, 834
PleI GAGTC 1 cut(s) 521
PpsI GAGTC 1 cut(s) 521
PspN4I GGNNCC 3 cut(s) 7, 628, 762
PspPI GGNCC 2 cut(s) 424, 626
RsaI GTAC 6 cut(s) 107, 468, 740, 787, 797, 893
RsaNI GTAC 6 cut(s) 106, 467, 739, 786, 796, 892
SaqAI TTAA 2 cut(s) 62, 240
SatI GCNGC 2 cut(s) 774, 833
Sau3AI GATC 1 cut(s) 913
Sau96I GGNCC 2 cut(s) 424, 626
SchI GAGTC 1 cut(s) 521
ScrFI CCNGG 6 cut(s) 431, 587, 588, 790, 815, 816
SduI GDGCHC 2 cut(s) 8, 587
SinI GGWCC 1 cut(s) 626
SmaI CCCGGG 2 cut(s) 588, 816
Sse9I AATT 3 cut(s) 14, 53, 404
SsiI CCGC 9 cut(s) 116, 488, 516, 638, 707, 755, 773, 780, 869
SspMI CTAG 1 cut(s) 386
StyD4I CCNGG 6 cut(s) 429, 585, 586, 788, 813, 814
StyI CCWWGG 2 cut(s) 120, 154
TaaI ACNGT 5 cut(s) 105, 217, 380, 715, 940
TaiI ACGT 2 cut(s) 101, 666
TaqI TCGA 4 cut(s) 306, 492, 530, 845
TasI AATT 3 cut(s) 14, 53, 404
TatI WGTACW 1 cut(s) 466
TauI GCSGC 1 cut(s) 776
TfiI GAWTC 1 cut(s) 842
Tru1I TTAA 2 cut(s) 62, 240
Tru9I TTAA 2 cut(s) 62, 240
TscAI CASTG 7 cut(s) 108, 220, 478, 587, 599, 720, 935
TseFI GTSAC 3 cut(s) 99, 283, 715
TseI GCWGC 1 cut(s) 832
Tsp45I GTSAC 3 cut(s) 99, 283, 715
TspDTI ATGAA 2 cut(s) 332, 544
TspGWI ACGGA 3 cut(s) 639, 714, 813
TspMI CCCGGG 2 cut(s) 586, 814
TspRI CASTG 7 cut(s) 108, 220, 478, 587, 599, 720, 935
VpaK11BI GGWCC 1 cut(s) 626
XapI RAATTY 1 cut(s) 404
XcmI CCANNNNNNNNNTGG 1 cut(s) 661
XmaI CCCGGG 2 cut(s) 586, 814
XspI CTAG 1 cut(s) 386
ZraI GACGTC 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.