Rh7BG446800

Phosphate-induced protein 1 conserved region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0002144
Physical Location & Seq
Forward (+)
52097815 .. 52098645
831 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG446800.1

Sequence Viewer

Length: 831 bp
ATGGCTCTGACCTACCACGGTGGCGCTTTGCTCCAAGGAGACCTCCCAGTCTCTATACTCTGGTATGGAAACTTCTCACCAGCCCAGAGATCCATTGTGGCAGACTTTCTTCTCTCCCTTAAATATAACAACCCTCACAAAGATCAAAAGAGAGCTAAGCCCTCAGTAACTCAATGGTGGAATTCAGTCCAAACCTACATGAAAAAAGCCGGCCAAAAACCAACCCATGTTTCTCTTTCTACCCAACTCTCAGACCACAACTGCTCTCTGGGAAAAACCCTAAAAAAATCTCAAATCTCCGAGTTAGCACACCGGGTCAACTCGCCCAACTCGGGTGGATTGACACTTGTACTCACTGCCCCAGATGTAGCGGTCGAAGGGTTTTGCATGAGCAACTGCGGGTTTCACGACTCGAACCGGAAGTCCAACTCGGTCTTCATCTGGGTCGGGAACTCGGCGACTCAGTGCCCGGGTCAGTGCGCGTGGCCATTCCACCAACCCATCTACGGACCACGAACCCCGCCGTTGGTTGCACCCAACGCCGACGTGGGGGTGGATGGCATGGTGATAAATATCGCTACTCTTTTGGCGGGAACAGTGACAAATCCGTTTGTAAACGGGTACTACCTCGGGTCAGCGGAGGCGCCATTAGAGGCGGCCTCCGCTTGTACTGGGGTGTACGGAAAGGGGGCATACCCGGGTTATGCAGGGAAGCTGCTGGTGGATTCGAGTAGTGGCGCAAGCTACAATGCGGTGGGCGTGAATGGGAGAAAGTACCTCTTGCCTGCTTTGTTTGATCCTTATACTTCTCAGTGTGAGACCATAGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Phi_1

Protein Analysis

276

Amino Acids

29.48

Weight (kDa)

8.76

Isoelectric Point (pI)

31.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Phi_1 PF04674 3 - 274 4.7e-122 Phosphate-induced protein 1 conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 47
AccB1I GGYRCC 1 cut(s) 643
AccII CGCG 1 cut(s) 482
AciI CCGC 8 cut(s) 371, 399, 521, 590, 638, 656, 663, 752
AclWI GGATC 2 cut(s) 84, 791
AcoI YGGCCR 2 cut(s) 211, 485
AcsI RAATTY 1 cut(s) 181
AcyI GRCGYC 1 cut(s) 644
AfaI GTAC 5 cut(s) 351, 623, 670, 680, 776
AfiI CCNNNNNNNGG 4 cut(s) 332, 506, 526, 549
AjiI CACGTC 1 cut(s) 547
AjuI GAANNNNNNNTTGG 4 cut(s) 214, 246, 419, 451
AloI GAACNNNNNNTCC 2 cut(s) 407, 439
AluBI AGCT 3 cut(s) 155, 715, 744
AluI AGCT 3 cut(s) 155, 715, 744
Alw26I GTCTC 3 cut(s) 33, 55, 812
AlwI GGATC 2 cut(s) 84, 791
Ama87I CYCGRG 4 cut(s) 331, 469, 629, 697
AoxI GGCC 3 cut(s) 211, 485, 657
ApeKI GCWGC 1 cut(s) 715
ApoI RAATTY 1 cut(s) 181
ArsI GACNNNNNNTTYG 2 cut(s) 407, 439
AspLEI GCGC 4 cut(s) 26, 482, 646, 740
AspS9I GGNCC 1 cut(s) 509
AsuC2I CCSGG 5 cut(s) 314, 470, 471, 698, 699
AsuHPI GGTGA 2 cut(s) 69, 577
AvaI CYCGRG 4 cut(s) 331, 469, 629, 697
AvaII GGWCC 1 cut(s) 509
BaeGI GKGCMC 1 cut(s) 470
BalI TGGCCA 1 cut(s) 487
BanI GGYRCC 1 cut(s) 643
BarI GAAGNNNNNNTAC 2 cut(s) 56, 88
BbsI GAAGAC 1 cut(s) 427
BbvI GCAGC 1 cut(s) 702
BccI CCATC 2 cut(s) 509, 551
BceAI ACGGC 1 cut(s) 508
BcnI CCSGG 5 cut(s) 314, 470, 471, 698, 699
BcoDI GTCTC 3 cut(s) 33, 55, 812
BfoI RGCGCY 2 cut(s) 27, 647
BisI GCNGC 2 cut(s) 657, 716
BlpI GCTNAGC 1 cut(s) 156
BlsI GCNGC 2 cut(s) 658, 717
Bme1390I CCNGG 5 cut(s) 314, 470, 471, 698, 699
Bme18I GGWCC 1 cut(s) 509
BmeT110I CYCGRG 4 cut(s) 331, 469, 629, 697
BmgBI CACGTC 1 cut(s) 547
BmgT120I GGNCC 1 cut(s) 509
BmiI GGNNCC 1 cut(s) 645
BmrFI CCNGG 5 cut(s) 314, 470, 471, 698, 699
BmrI ACTGGG 2 cut(s) 41, 681
BmuI ACTGGG 2 cut(s) 41, 681
BpiI GAAGAC 1 cut(s) 427
BplI GAGNNNNNCTC 2 cut(s) 644, 676
Bpu1102I GCTNAGC 1 cut(s) 156
BpuMI CCSGG 5 cut(s) 314, 470, 471, 698, 699
BsaBI GATNNNNATC 1 cut(s) 572
BsaHI GRCGYC 1 cut(s) 644
BsaI GGTCTC 2 cut(s) 33, 812
BsaJI CCNNGG 5 cut(s) 16, 34, 469, 628, 697
BsaWI WCCGGW 1 cut(s) 417
Bsc4I CCNNNNNNNGG 4 cut(s) 332, 506, 526, 549
Bse118I RCCGGY 1 cut(s) 209
Bse1I ACTGG 2 cut(s) 47, 676
Bse8I GATNNNNATC 1 cut(s) 572
BseDI CCNNGG 5 cut(s) 16, 34, 469, 628, 697
BseGI GGATG 1 cut(s) 562
BseJI GATNNNNATC 1 cut(s) 572
BseLI CCNNNNNNNGG 4 cut(s) 332, 506, 526, 549
BseMII CTCAG 4 cut(s) 177, 264, 476, 824
BseNI ACTGG 2 cut(s) 47, 676
BseSI GKGCMC 1 cut(s) 470
BseXI GCAGC 1 cut(s) 702
Bsh1236I CGCG 1 cut(s) 482
Bsh1285I CGRYCG 1 cut(s) 375
BshFI GGCC 3 cut(s) 213, 487, 659
BshNI GGYRCC 1 cut(s) 643
BsiEI CGRYCG 1 cut(s) 375
BsiHKCI CYCGRG 4 cut(s) 331, 469, 629, 697
BsiSI CCGG 5 cut(s) 210, 313, 418, 470, 698
BslI CCNNNNNNNGG 4 cut(s) 332, 506, 526, 549
BsmAI GTCTC 3 cut(s) 33, 55, 812
BsnI GGCC 3 cut(s) 213, 487, 659
Bso31I GGTCTC 2 cut(s) 33, 812
BsoBI CYCGRG 4 cut(s) 331, 469, 629, 697
Bsp1286I GDGCHC 1 cut(s) 470
Bsp143I GATC 3 cut(s) 89, 142, 796
Bsp1720I GCTNAGC 1 cut(s) 156
BspACI CCGC 8 cut(s) 371, 399, 521, 590, 638, 656, 663, 752
BspANI GGCC 3 cut(s) 213, 487, 659
BspCNI CTCAG 4 cut(s) 176, 263, 475, 823
BspFNI CGCG 1 cut(s) 482
BspLI GGNNCC 1 cut(s) 645
BspPI GGATC 2 cut(s) 84, 791
BspT107I GGYRCC 1 cut(s) 643
BspTNI GGTCTC 2 cut(s) 33, 812
BsrFI RCCGGY 1 cut(s) 209
BsrI ACTGG 2 cut(s) 47, 676
BssAI RCCGGY 1 cut(s) 209
BssECI CCNNGG 5 cut(s) 16, 34, 469, 628, 697
BssMI GATC 3 cut(s) 89, 142, 796
BssNI GRCGYC 1 cut(s) 644
BssT1I CCWWGG 1 cut(s) 34
Bst4CI ACNGT 2 cut(s) 20, 598
BstACI GRCGYC 1 cut(s) 644
BstC8I GCNNGC 3 cut(s) 211, 742, 786
BstDEI CTNAG 5 cut(s) 156, 163, 250, 462, 810
BstDSI CCRYGG 1 cut(s) 16
BstF5I GGATG 1 cut(s) 562
BstFNI CGCG 1 cut(s) 482
BstH2I RGCGCY 2 cut(s) 27, 647
BstHHI GCGC 4 cut(s) 26, 482, 646, 740
BstKTI GATC 3 cut(s) 92, 145, 799
BstMAI GTCTC 3 cut(s) 33, 55, 812
BstMBI GATC 3 cut(s) 89, 142, 796
BstMCI CGRYCG 1 cut(s) 375
BstMWI GCNNNNNNNGC 2 cut(s) 539, 662
BstSCI CCNGG 5 cut(s) 312, 468, 469, 696, 697
BstSLI GKGCMC 1 cut(s) 470
BstUI CGCG 1 cut(s) 482
BstV1I GCAGC 1 cut(s) 702
BstV2I GAAGAC 1 cut(s) 427
BstX2I RGATCY 1 cut(s) 89
BstYI RGATCY 1 cut(s) 89
BsuRI GGCC 3 cut(s) 213, 487, 659
BtgI CCRYGG 1 cut(s) 16
BtrI CACGTC 1 cut(s) 547
BtsCI GGATG 1 cut(s) 562
BtsI GCAGTG 1 cut(s) 354
BtsIMutI CAGTG 5 cut(s) 354, 470, 482, 603, 818
Cac8I GCNNGC 3 cut(s) 211, 742, 786
CfoI GCGC 4 cut(s) 26, 482, 646, 740
Cfr10I RCCGGY 1 cut(s) 209
Cfr13I GGNCC 1 cut(s) 509
Cfr9I CCCGGG 2 cut(s) 469, 697
Csp6I GTAC 5 cut(s) 350, 622, 669, 679, 775
CspCI CAANNNNNGTGG 2 cut(s) 316, 351
CviAII CATG 4 cut(s) 199, 227, 388, 562
CviQI GTAC 5 cut(s) 350, 622, 669, 679, 775
DdeI CTNAG 5 cut(s) 156, 163, 250, 462, 810
DinI GGCGCC 1 cut(s) 645
DpnI GATC 3 cut(s) 91, 144, 798
DpnII GATC 3 cut(s) 89, 142, 796
DrdI GACNNNNNNGTC 1 cut(s) 47
DseDI GACNNNNNNGTC 1 cut(s) 47
EaeI YGGCCR 2 cut(s) 211, 485
Eco130I CCWWGG 1 cut(s) 34
Eco31I GGTCTC 2 cut(s) 33, 812
Eco47I GGWCC 1 cut(s) 509
Eco88I CYCGRG 4 cut(s) 331, 469, 629, 697
EcoRI GAATTC 1 cut(s) 181
EcoT14I CCWWGG 1 cut(s) 34
EgeI GGCGCC 1 cut(s) 645
EheI GGCGCC 1 cut(s) 645
ErhI CCWWGG 1 cut(s) 34
FaeI CATG 4 cut(s) 202, 230, 391, 565
FalI AAGNNNNNCTT 2 cut(s) 764, 796
FatI CATG 4 cut(s) 198, 226, 387, 561
FauI CCCGC 3 cut(s) 392, 528, 583
Fnu4HI GCNGC 2 cut(s) 657, 716
FokI GGATG 1 cut(s) 569
Fsp4HI GCNGC 2 cut(s) 657, 716
GlaI GCGC 4 cut(s) 25, 481, 645, 739
GluI GCNGC 2 cut(s) 657, 716
HaeII RGCGCY 2 cut(s) 27, 647
HaeIII GGCC 3 cut(s) 213, 487, 659
HapII CCGG 5 cut(s) 210, 313, 418, 470, 698
HhaI GCGC 4 cut(s) 26, 482, 646, 740
Hin1I GRCGYC 1 cut(s) 644
Hin1II CATG 4 cut(s) 202, 230, 391, 565
Hin6I GCGC 4 cut(s) 24, 480, 644, 738
HinP1I GCGC 4 cut(s) 24, 480, 644, 738
HincII GTYRAC 1 cut(s) 319
HindII GTYRAC 1 cut(s) 319
HinfI GANTC 3 cut(s) 410, 460, 725
HpaII CCGG 5 cut(s) 210, 313, 418, 470, 698
HphI GGTGA 2 cut(s) 69, 577
Hpy166II GTNNAC 3 cut(s) 319, 616, 679
Hpy188I TCNGA 3 cut(s) 9, 253, 301
Hpy188III TCNNGA 2 cut(s) 407, 448
Hpy8I GTNNAC 3 cut(s) 319, 616, 679
Hpy99I CGWCG 1 cut(s) 548
HpyAV CCTTC 1 cut(s) 371
HpyCH4III ACNGT 2 cut(s) 20, 598
HpyCH4IV ACGT 1 cut(s) 546
HpyCH4V TGCA 3 cut(s) 387, 533, 707
HpyF10VI GCNNNNNNNGC 2 cut(s) 539, 662
HpyF3I CTNAG 5 cut(s) 156, 163, 250, 462, 810
HpySE526I ACGT 1 cut(s) 546
Hsp92I GRCGYC 1 cut(s) 644
Hsp92II CATG 4 cut(s) 202, 230, 391, 565
HspAI GCGC 4 cut(s) 24, 480, 644, 738
KasI GGCGCC 1 cut(s) 643
KroI GCCGGC 1 cut(s) 209
KroNI GCCGGC 1 cut(s) 211
Kzo9I GATC 3 cut(s) 89, 142, 796
LmnI GCTCC 1 cut(s) 36
Lsp1109I GCAGC 1 cut(s) 702
MaeII ACGT 1 cut(s) 546
MaeIII GTNAC 2 cut(s) 166, 598
MalI GATC 3 cut(s) 91, 144, 798
MboI GATC 3 cut(s) 89, 142, 796
MboII GAAGA 2 cut(s) 101, 427
MflI RGATCY 1 cut(s) 89
MhlI GDGCHC 1 cut(s) 470
MlsI TGGCCA 1 cut(s) 487
MluCI AATT 1 cut(s) 181
MluNI TGGCCA 1 cut(s) 487
Mly113I GGCGCC 1 cut(s) 644
MlyI GAGTC 2 cut(s) 404, 454
MmeI TCCRAC 1 cut(s) 450
MnlI CCTC 8 cut(s) 53, 144, 172, 634, 638, 646, 670, 788
Mox20I TGGCCA 1 cut(s) 487
MroNI GCCGGC 1 cut(s) 209
MscI TGGCCA 1 cut(s) 487
MseI TTAA 1 cut(s) 120
Msp20I TGGCCA 1 cut(s) 487
MspA1I CMGCKG 1 cut(s) 638
MspI CCGG 5 cut(s) 210, 313, 418, 470, 698
MspR9I CCNGG 5 cut(s) 314, 470, 471, 698, 699
MvnI CGCG 1 cut(s) 482
MwoI GCNNNNNNNGC 2 cut(s) 539, 662
NaeI GCCGGC 1 cut(s) 211
NarI GGCGCC 1 cut(s) 644
NciI CCSGG 5 cut(s) 314, 470, 471, 698, 699
NdeII GATC 3 cut(s) 89, 142, 796
NgoMIV GCCGGC 1 cut(s) 209
NlaIII CATG 4 cut(s) 202, 230, 391, 565
NlaIV GGNNCC 1 cut(s) 645
NmeAIII GCCGAG 1 cut(s) 434
NmuCI GTSAC 1 cut(s) 598
PdiI GCCGGC 1 cut(s) 211
PfeI GAWTC 1 cut(s) 725
PkrI GCNGC 2 cut(s) 658, 717
PleI GAGTC 2 cut(s) 404, 454
PluTI GGCGCC 1 cut(s) 647
PpsI GAGTC 2 cut(s) 404, 454
PspN4I GGNNCC 1 cut(s) 645
PspPI GGNCC 1 cut(s) 509
PsuI RGATCY 1 cut(s) 89
RsaI GTAC 5 cut(s) 351, 623, 670, 680, 776
RsaNI GTAC 5 cut(s) 350, 622, 669, 679, 775
SaqAI TTAA 1 cut(s) 120
SatI GCNGC 2 cut(s) 657, 716
Sau3AI GATC 3 cut(s) 89, 142, 796
Sau96I GGNCC 1 cut(s) 509
SchI GAGTC 2 cut(s) 404, 454
ScrFI CCNGG 5 cut(s) 314, 470, 471, 698, 699
SduI GDGCHC 1 cut(s) 470
SetI ASST 9 cut(s) 14, 45, 157, 197, 549, 630, 717, 746, 780
SfoI GGCGCC 1 cut(s) 645
SinI GGWCC 1 cut(s) 509
SmaI CCCGGG 2 cut(s) 471, 699
Sse9I AATT 1 cut(s) 181
SsiI CCGC 8 cut(s) 371, 399, 521, 590, 638, 656, 663, 752
SspDI GGCGCC 1 cut(s) 643
StyD4I CCNGG 5 cut(s) 312, 468, 469, 696, 697
StyI CCWWGG 1 cut(s) 34
TaaI ACNGT 2 cut(s) 20, 598
TaiI ACGT 1 cut(s) 549
TaqI TCGA 3 cut(s) 375, 413, 728
TaqII GACCGA 1 cut(s) 421
TasI AATT 1 cut(s) 181
TatI WGTACW 2 cut(s) 349, 668
TauI GCSGC 1 cut(s) 659
TfiI GAWTC 1 cut(s) 725
Tru1I TTAA 1 cut(s) 120
Tru9I TTAA 1 cut(s) 120
TscAI CASTG 5 cut(s) 361, 470, 482, 603, 818
TseFI GTSAC 1 cut(s) 598
TseI GCWGC 1 cut(s) 715
Tsp45I GTSAC 1 cut(s) 598
TspDTI ATGAA 2 cut(s) 215, 427
TspGWI ACGGA 3 cut(s) 522, 597, 696
TspMI CCCGGG 2 cut(s) 469, 697
TspRI CASTG 5 cut(s) 361, 470, 482, 603, 818
VpaK11BI GGWCC 1 cut(s) 509
XapI RAATTY 1 cut(s) 181
XcmI CCANNNNNNNNNTGG 1 cut(s) 544
XmaI CCCGGG 2 cut(s) 469, 697
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.