Rorug07G0320400

Phosphate-induced protein 1 conserved region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0002144
Physical Location & Seq
Forward (+)
32885860 .. 32886744
885 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0320400.1

Sequence Viewer

Length: 885 bp
ATGTATGAAGATTTGGGTGCCAAAATTTCCTCAAGGTTTCGGAACCTCAAGGATGGTTGGTTTGTTTTTAGATATGCACTTGTCGATTGTCCCAATTGTTACTTAGAGTGTGATGATAACATTTTGGTCATGTTGGATATCTTTCAATTGCTAAGTTATCCACTTATAGATATACATGTTCTTGATGTTGGACCTTGTTCTAAGATGTGTATTGATAAGGAGGAAATTCCTGCTACTGTGAAACATGCTACTGTGAATAATGCCATTGTGAATATCCCTGAACATGTTGATGAAGATCGTGTGAGTAGTCATGATTCAAACCTTGAGGATGACAACATGTTAATTGGAAATTTTGTGAGCAATAAGTCTAAGAGGAAGTATATGTCTAGTGATTGGAATGACAATATATATAAGATTGGTCAAGTCTTCATTGGTGGTGCCGTAGAATTTCGAGATAAGTTGTACAAATTTGCAGTTGAGAATGGGTTTGAGTTTAACTATGTTAAAAACGACAAGTGTCGTGTTAGTGCTACTTGTGCCAAGAAAGATTTCGATGGGTGTGAATGGTACATTTATGCTTCCTTAAACAAGGCTAGTGGTTATTTCCATATAACAAAGTTGGTGAATAATCATTCTTGTGTTGGTGTTGTCGGGCATCAAAATCATAAGAGTCTAGGATTTAAAGTTATTTCCATTATTATGGCAGATGAAATGAGATCCGATCCTTTGGTTAAGCTCAAGGATATAGTCAAACATTTCAAGCATGATTATGGGTTTGATATTCCTTATTACATGGCACATAGGGGCAAGGAGGCTGCTAATAAGATCTTACATATAGTGAAGCAGTTGGGTATTCTCTATTGCCTTGGTATATTGACAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Phi_1

Protein Analysis

294

Amino Acids

33.65

Weight (kDa)

6.45

Isoelectric Point (pI)

36.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DBD_Tnp_Mut PF03108 137 - 204 2e-09 MuDR family transposase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 17, 437
AclWI GGATC 2 cut(s) 711, 716
AcsI RAATTY 5 cut(s) 24, 225, 349, 446, 467
AfaI GTAC 2 cut(s) 464, 569
AflIII ACRYGT 3 cut(s) 175, 283, 336
AgsI TTSAA 3 cut(s) 146, 318, 760
AjuI GAANNNNNNNTTGG 2 cut(s) 533, 565
AluBI AGCT 1 cut(s) 736
AluI AGCT 1 cut(s) 736
AlwI GGATC 2 cut(s) 711, 716
ApeKI GCWGC 1 cut(s) 815
ApoI RAATTY 5 cut(s) 24, 225, 349, 446, 467
Asp700I GAANNNNTTC 1 cut(s) 548
AspS9I GGNCC 1 cut(s) 191
AsuHPI GGTGA 1 cut(s) 634
AvaII GGWCC 1 cut(s) 191
BanI GGYRCC 2 cut(s) 17, 437
BbsI GAAGAC 1 cut(s) 418
BbvI GCAGC 1 cut(s) 802
BccI CCATC 2 cut(s) 47, 548
BceAI ACGGC 1 cut(s) 425
BfaI CTAG 3 cut(s) 387, 594, 674
BglII AGATCT 1 cut(s) 825
BisI GCNGC 1 cut(s) 816
BlsI GCNGC 1 cut(s) 817
Bme18I GGWCC 1 cut(s) 191
BmgT120I GGNCC 1 cut(s) 191
BmiI GGNNCC 3 cut(s) 19, 44, 439
BmsI GCATC 1 cut(s) 664
BoxI GACNNNNGTC 1 cut(s) 516
BpiI GAAGAC 1 cut(s) 418
BpuEI CTTGAG 4 cut(s) 16, 32, 344, 722
BsaBI GATNNNNATC 1 cut(s) 294
BsaJI CCNNGG 1 cut(s) 865
Bse8I GATNNNNATC 1 cut(s) 294
BseDI CCNNGG 1 cut(s) 865
BseGI GGATG 2 cut(s) 58, 334
BseJI GATNNNNATC 1 cut(s) 294
BseXI GCAGC 1 cut(s) 802
BshNI GGYRCC 2 cut(s) 17, 437
BslFI GGGAC 1 cut(s) 75
BsmFI GGGAC 1 cut(s) 75
Bsp1407I TGTACA 1 cut(s) 462
Bsp143I GATC 4 cut(s) 295, 716, 721, 825
BspHI TCATGA 1 cut(s) 310
BspLI GGNNCC 3 cut(s) 19, 44, 439
BspPI GGATC 2 cut(s) 711, 716
BspT107I GGYRCC 2 cut(s) 17, 437
BsrGI TGTACA 1 cut(s) 462
BssECI CCNNGG 1 cut(s) 865
BssMI GATC 4 cut(s) 295, 716, 721, 825
BssT1I CCWWGG 1 cut(s) 865
Bst4CI ACNGT 2 cut(s) 238, 253
BstAUI TGTACA 1 cut(s) 462
BstDEI CTNAG 4 cut(s) 103, 152, 201, 369
BstF5I GGATG 2 cut(s) 58, 334
BstKTI GATC 4 cut(s) 298, 719, 724, 828
BstMBI GATC 4 cut(s) 295, 716, 721, 825
BstMWI GCNNNNNNNGC 1 cut(s) 536
BstNSI RCATGY 4 cut(s) 179, 248, 287, 340
BstPAI GACNNNNGTC 1 cut(s) 516
BstV1I GCAGC 1 cut(s) 802
BstV2I GAAGAC 1 cut(s) 418
BstX2I RGATCY 2 cut(s) 716, 825
BstXI CCANNNNNNTGG 1 cut(s) 700
BstYI RGATCY 2 cut(s) 716, 825
BtsCI GGATG 2 cut(s) 58, 334
CciI TCATGA 1 cut(s) 310
Cfr13I GGNCC 1 cut(s) 191
Csp6I GTAC 2 cut(s) 463, 568
CspCI CAANNNNNGTGG 2 cut(s) 577, 612
CviAII CATG 8 cut(s) 130, 176, 245, 284, 311, 337, 764, 793
CviJI RGCY 3 cut(s) 593, 736, 815
CviKI_1 RGCY 3 cut(s) 593, 736, 815
CviQI GTAC 2 cut(s) 463, 568
DdeI CTNAG 4 cut(s) 103, 152, 201, 369
DpnI GATC 4 cut(s) 297, 718, 723, 827
DpnII GATC 4 cut(s) 295, 716, 721, 825
DraI TTTAAA 1 cut(s) 682
Eco130I CCWWGG 1 cut(s) 865
Eco32I GATATC 1 cut(s) 139
Eco47I GGWCC 1 cut(s) 191
EcoRV GATATC 1 cut(s) 139
EcoT14I CCWWGG 1 cut(s) 865
ErhI CCWWGG 1 cut(s) 865
FaeI CATG 8 cut(s) 133, 179, 248, 287, 314, 340, 767, 796
FaqI GGGAC 1 cut(s) 75
FatI CATG 8 cut(s) 129, 175, 244, 283, 310, 336, 763, 792
Fnu4HI GCNGC 1 cut(s) 816
FokI GGATG 2 cut(s) 65, 341
Fsp4HI GCNGC 1 cut(s) 816
FspBI CTAG 3 cut(s) 387, 594, 674
GluI GCNGC 1 cut(s) 816
Hin1II CATG 8 cut(s) 133, 179, 248, 287, 314, 340, 767, 796
HinfI GANTC 2 cut(s) 314, 670
HphI GGTGA 1 cut(s) 634
Hpy188I TCNGA 2 cut(s) 42, 721
Hpy188III TCNNGA 3 cut(s) 182, 311, 452
HpyCH4III ACNGT 2 cut(s) 238, 253
HpyCH4V TGCA 2 cut(s) 77, 473
HpyF10VI GCNNNNNNNGC 1 cut(s) 536
HpyF3I CTNAG 4 cut(s) 103, 152, 201, 369
Hsp92II CATG 8 cut(s) 133, 179, 248, 287, 314, 340, 767, 796
Kzo9I GATC 4 cut(s) 295, 716, 721, 825
LpnPI CCDG 2 cut(s) 243, 291
Lsp1109I GCAGC 1 cut(s) 802
LweI GCATC 1 cut(s) 664
MaeI CTAG 3 cut(s) 387, 594, 674
MaeIII GTNAC 1 cut(s) 98
MalI GATC 4 cut(s) 297, 718, 723, 827
MboI GATC 4 cut(s) 295, 716, 721, 825
MboII GAAGA 3 cut(s) 20, 305, 418
MfeI CAATTG 2 cut(s) 94, 146
MflI RGATCY 2 cut(s) 716, 825
MluCI AATT 9 cut(s) 24, 94, 146, 225, 342, 349, 446, 467, 880
MlyI GAGTC 1 cut(s) 679
MmeI TCCRAC 2 cut(s) 114, 169
MnlI CCTC 6 cut(s) 40, 56, 214, 319, 366, 805
MroXI GAANNNNTTC 1 cut(s) 548
MseI TTAA 6 cut(s) 341, 495, 504, 584, 681, 732
MslI CAYNNNNRTG 4 cut(s) 288, 636, 698, 768
MunI CAATTG 2 cut(s) 94, 146
MwoI GCNNNNNNNGC 1 cut(s) 536
NdeII GATC 4 cut(s) 295, 716, 721, 825
NlaIII CATG 8 cut(s) 133, 179, 248, 287, 314, 340, 767, 796
NlaIV GGNNCC 3 cut(s) 19, 44, 439
NspI RCATGY 4 cut(s) 179, 248, 287, 340
PagI TCATGA 1 cut(s) 310
PciI ACATGT 3 cut(s) 175, 283, 336
PdmI GAANNNNTTC 1 cut(s) 548
PfeI GAWTC 1 cut(s) 314
PkrI GCNGC 1 cut(s) 817
PleI GAGTC 1 cut(s) 678
PpsI GAGTC 1 cut(s) 678
PscI ACATGT 3 cut(s) 175, 283, 336
PshAI GACNNNNGTC 1 cut(s) 516
PspN4I GGNNCC 3 cut(s) 19, 44, 439
PspPI GGNCC 1 cut(s) 191
PsuI RGATCY 2 cut(s) 716, 825
RsaI GTAC 2 cut(s) 464, 569
RsaNI GTAC 2 cut(s) 463, 568
RseI CAYNNNNRTG 4 cut(s) 288, 636, 698, 768
SaqAI TTAA 6 cut(s) 341, 495, 504, 584, 681, 732
SatI GCNGC 1 cut(s) 816
Sau3AI GATC 4 cut(s) 295, 716, 721, 825
Sau96I GGNCC 1 cut(s) 191
SchI GAGTC 1 cut(s) 679
SetI ASST 5 cut(s) 38, 48, 196, 324, 738
SfaNI GCATC 1 cut(s) 664
SinI GGWCC 1 cut(s) 191
SmiMI CAYNNNNRTG 4 cut(s) 288, 636, 698, 768
SmlI CTYRAG 4 cut(s) 31, 47, 323, 737
SmoI CTYRAG 4 cut(s) 31, 47, 323, 737
Sse9I AATT 9 cut(s) 24, 94, 146, 225, 342, 349, 446, 467, 880
SspMI CTAG 3 cut(s) 387, 594, 674
StyI CCWWGG 1 cut(s) 865
TaaI ACNGT 2 cut(s) 238, 253
TaqI TCGA 3 cut(s) 84, 451, 552
TasI AATT 9 cut(s) 24, 94, 146, 225, 342, 349, 446, 467, 880
TatI WGTACW 1 cut(s) 462
TfiI GAWTC 1 cut(s) 314
Tru1I TTAA 6 cut(s) 341, 495, 504, 584, 681, 732
Tru9I TTAA 6 cut(s) 341, 495, 504, 584, 681, 732
TseI GCWGC 1 cut(s) 815
TspDTI ATGAA 4 cut(s) 21, 306, 418, 723
VpaK11BI GGWCC 1 cut(s) 191
XapI RAATTY 5 cut(s) 24, 225, 349, 446, 467
XceI RCATGY 4 cut(s) 179, 248, 287, 340
XmnI GAANNNNTTC 1 cut(s) 548
XspI CTAG 3 cut(s) 387, 594, 674
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.