Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0002144

Physical Location & Seq

Genomic Coordinates Reverse (-)

6622138 .. 6623019

Gene Structure 882 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1050200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGTATCCTATTTACCACTTTGCCACTTCTCTCTTGCTACTCTTGTTTCTGGCCGAGCCCGGTTTGGGTGCTTTAGTGGAGGAGCAGCCCCTGGTGCTCAAGTACCACAACGGCGCTCTTCTCAAAGGCAACATCACCGTCAATCTCATCTGGTACGGCCACTTCACCCCAATCCAACGCTCCATCATCGTCGACTTCATCCACTCCCTCGCCCCCCGGCGGGGCCCACTCCCCTCTGCCTCCTCCTGGTGGAAAACCACCGAGAAGTACAAGGGCGGCGCCTCCAATCTCGTCGTCGGCAGGCAAATCCTCCACGAGGCCTACTCTCTCGGAAAGTCCCTCGGCAACCGGCACCTGGTAGCCCTCGCCGGCAAAGTCAACGCGTTGAAGGCCATCAACGTGGTTTTGACTGCCAGTGACGTGGCGGTCGACGGCTTCTGTAGCCGCTGCGGTACCCACGGCTCCGCCCGGGACAAGAAGTCGGCTTACGTGTGGGTTGGGAACTCGGTGGTCCAGTGCCCCGGCCAATGCGCCTGGCCCTTTCACCAGCCCATTTACGGCCCGCAAACCCCGCCGTTAGTGGCCCCAAACGGCGACGTCGGAGTTGACGGCATGATCATAAACCTCGCCACTCTCTTGGCGGGAACAGTAACCAATCCGTACAACAATGGATACTTCCAAGGGCCGGCCACCGCGCCGCTCGAGGCGGTCTCTGCCTGCACGGGCATTTTCGGAACCGGGGCATACCCGGGTTATCCGGGTCAAGTCCTGGTGGACAAGGCGACCGGGGCGAGCTACAACGCGGTCGGGGTGAACGGGCGTAGGTTTCTACTGCCAGCCATGTGGGACCCGCAGACCTCTGCATGCAAGCCGCTTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002239 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005829 GO:0005911 GO:0008150 GO:0009505 GO:0009506 GO:0009605 GO:0009607 GO:0012505 GO:0016020 GO:0030054 GO:0030312 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Phi_1

Protein Analysis

294

Amino Acids

31.18

Weight (kDa)

9.09

Isoelectric Point (pI)

23.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Phi_1	PF04674	33 - 290	6.4e-118	Phosphate-induced protein 1 conserved region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002144)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64260
fragaria_vesca	FvH4_5g36850 FvH4_5g36960
malus_domestica	MD05G1042900.v1.1 MD08G1186400.v1.1 MD10G1050200.v1.1
prunus_persica	Prupe.1G520500_v2.0.a1 Prupe.1G520900_v2.0.a1 Prupe.8G064100_v2.0.a1
pyrus_communis	pycom05g03550 pycom08g16020 pycom10g03530
rosa_chinensis	RchiOBHm_Chr6g0271521 RchiOBHm_Chr7g0243431 RchiOBHm_Chr7g0243701
rosa_laevigata	RLG00000000839 RLG00000000847 RLG00000013724
rosa_multiflora	Rmu_sc0001036.1_g000013 Rmu_sc0008223.1_g000011 Rmu_sc0032000.1_g000003
rosa_roxburghii	Rroxscaffold_3G00222000 Rroxscaffold_3G00222110 Rroxscaffold_7G00196930
rosa_rugosa	Rorug06G0061200 Rorug07G0319200 Rorug07G0320400
rosa_samantha	Rh6AG180400 Rh6CG180200 Rh6DG172100 Rh7AG475300 Rh7AG475900 Rh7BG445200 Rh7BG446600 Rh7BG446800 Rh7BG446900 Rh7CG491500 Rh7CG492900 Rh7DG459800 Rh7DG461000
rosa_wichuraiana	Rw6G015500 Rw6G015570 Rw7G039550 Rw7G039640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	425
AatII	GACGTC	1 cut(s)	600
Acc65I	GGTACC	1 cut(s)	452
AccB1I	GGYRCC	3 cut(s)	278, 351, 452
AccBSI	CCGCTC	1 cut(s)	700
AccI	GTMKAC	2 cut(s)	192, 429
AccII	CGCG	3 cut(s)	383, 695, 803
AcoI	YGGCCR	4 cut(s)	51, 157, 523, 687
AcyI	GRCGYC	2 cut(s)	279, 597
AfaI	GTAC	5 cut(s)	104, 155, 269, 454, 662
AflIII	ACRYGT	2 cut(s)	381, 489
AgsI	TTSAA	1 cut(s)	388
AhdI	GACNNNNNGTC	1 cut(s)	478
AjiI	CACGTC	1 cut(s)	421
AjnI	CCWGG	5 cut(s)	90, 245, 354, 533, 768
AluBI	AGCT	1 cut(s)	795
AluI	AGCT	1 cut(s)	795
Alw21I	GWGCWC	1 cut(s)	99
Alw26I	GTCTC	1 cut(s)	715
AlwNI	CAGNNNCTG	1 cut(s)	91
Ama87I	CYCGRG	3 cut(s)	468, 701, 748
ApaI	GGGCCC	1 cut(s)	227
ApeKI	GCWGC	2 cut(s)	85, 447
Asp718I	GGTACC	1 cut(s)	452
AspLEI	GCGC	4 cut(s)	116, 281, 533, 697
AspS9I	GGNCC	8 cut(s)	223, 224, 511, 537, 560, 583, 683, 847
AsuHPI	GGTGA	4 cut(s)	127, 157, 536, 823
AvaI	CYCGRG	3 cut(s)	468, 701, 748
AvaII	GGWCC	2 cut(s)	511, 847
BaeGI	GKGCMC	2 cut(s)	227, 521
BanI	GGYRCC	3 cut(s)	278, 351, 452
BanII	GRGCYC	2 cut(s)	60, 227
BarI	GAAGNNNNNNTAC	4 cut(s)	146, 178, 470, 502
BauI	CACGAG	1 cut(s)	314
Bbv12I	GWGCWC	1 cut(s)	99
BbvI	GCAGC	2 cut(s)	97, 434
BccI	CCATC	2 cut(s)	191, 401
BceAI	ACGGC	8 cut(s)	127, 172, 448, 475, 559, 574, 607, 625
BciT130I	CCWGG	5 cut(s)	92, 247, 356, 535, 770
BciVI	GTATCC	2 cut(s)	15, 665
BclI	TGATCA	1 cut(s)	615
BcoDI	GTCTC	1 cut(s)	715
BfmI	CTRYAG	1 cut(s)	439
BfoI	RGCGCY	2 cut(s)	117, 282
BfuI	GTATCC	2 cut(s)	15, 665
BisI	GCNGC	6 cut(s)	86, 277, 445, 448, 698, 872
BlsI	GCNGC	6 cut(s)	87, 278, 446, 449, 699, 873
Bme18I	GGWCC	2 cut(s)	511, 847
BmeRI	GACNNNNNGTC	1 cut(s)	478
BmeT110I	CYCGRG	3 cut(s)	468, 701, 748
BmgBI	CACGTC	1 cut(s)	421
BmgT120I	GGNCC	8 cut(s)	223, 224, 511, 537, 560, 583, 683, 847
BplI	GAGNNNNNCTC	4 cut(s)	308, 340, 695, 727
BpuEI	CTTGAG	1 cut(s)	83
BsaAI	YACGTR	1 cut(s)	490
BsaHI	GRCGYC	2 cut(s)	279, 597
BsaI	GGTCTC	1 cut(s)	715
Bse118I	RCCGGY	3 cut(s)	348, 368, 685
Bse1I	ACTGG	2 cut(s)	414, 514
BseBI	CCWGG	5 cut(s)	92, 247, 356, 535, 770
BseGI	GGATG	1 cut(s)	198
BseNI	ACTGG	2 cut(s)	414, 514
BseRI	GAGGAG	2 cut(s)	95, 232
BseSI	GKGCMC	2 cut(s)	227, 521
BseXI	GCAGC	2 cut(s)	97, 434
BsgI	GTGCAG	1 cut(s)	703
Bsh1236I	CGCG	3 cut(s)	383, 695, 803
Bsh1285I	CGRYCG	3 cut(s)	429, 786, 807
BshNI	GGYRCC	3 cut(s)	278, 351, 452
BsiEI	CGRYCG	3 cut(s)	429, 786, 807
BsiHKAI	GWGCWC	1 cut(s)	99
BsiHKCI	CYCGRG	3 cut(s)	468, 701, 748
BslFI	GGGAC	3 cut(s)	322, 485, 860
BsmAI	GTCTC	1 cut(s)	715
BsmFI	GGGAC	3 cut(s)	322, 485, 860
Bso31I	GGTCTC	1 cut(s)	715
BsoBI	CYCGRG	3 cut(s)	468, 701, 748
Bsp120I	GGGCCC	1 cut(s)	223
Bsp1286I	GDGCHC	4 cut(s)	60, 99, 227, 521
Bsp143I	GATC	1 cut(s)	615
BspFNI	CGCG	3 cut(s)	383, 695, 803
BspQI	GCTCTTC	1 cut(s)	123
BspT107I	GGYRCC	3 cut(s)	278, 351, 452
BspTNI	GGTCTC	1 cut(s)	715
BsrBI	CCGCTC	1 cut(s)	700
BsrFI	RCCGGY	3 cut(s)	348, 368, 685
BsrI	ACTGG	2 cut(s)	414, 514
BssAI	RCCGGY	3 cut(s)	348, 368, 685
BssMI	GATC	1 cut(s)	615
BssNI	GRCGYC	2 cut(s)	279, 597
BssSI	CACGAG	1 cut(s)	314
BssT1I	CCWWGG	1 cut(s)	679
Bst2BI	CACGAG	1 cut(s)	314
Bst2UI	CCWGG	5 cut(s)	92, 247, 356, 535, 770
Bst4CI	ACNGT	2 cut(s)	139, 649
Bst6I	CTCTTC	1 cut(s)	123
BstACI	GRCGYC	2 cut(s)	279, 597
BstBAI	YACGTR	1 cut(s)	490
BstC8I	GCNNGC	9 cut(s)	302, 370, 563, 687, 718, 793, 837, 865, 869
BstDSI	CCRYGG	1 cut(s)	457
BstENI	CCTNNNNNAGG	1 cut(s)	314
BstF5I	GGATG	1 cut(s)	198
BstFNI	CGCG	3 cut(s)	383, 695, 803
BstH2I	RGCGCY	2 cut(s)	117, 282
BstHHI	GCGC	4 cut(s)	116, 281, 533, 697
BstKTI	GATC	1 cut(s)	618
BstMAI	GTCTC	1 cut(s)	715
BstMBI	GATC	1 cut(s)	615
BstMCI	CGRYCG	3 cut(s)	429, 786, 807
BstMWI	GCNNNNNNNGC	6 cut(s)	94, 389, 441, 571, 713, 788
BstNI	CCWGG	5 cut(s)	92, 247, 356, 535, 770
BstNSI	RCATGY	1 cut(s)	867
BstSFI	CTRYAG	1 cut(s)	439
BstSLI	GKGCMC	2 cut(s)	227, 521
BstUI	CGCG	3 cut(s)	383, 695, 803
BstV1I	GCAGC	2 cut(s)	97, 434
BstXI	CCANNNNNNTGG	4 cut(s)	400, 421, 637, 843
BsuI	GTATCC	2 cut(s)	15, 665
BtgI	CCRYGG	1 cut(s)	457
BtrI	CACGTC	1 cut(s)	421
BtsCI	GGATG	1 cut(s)	198
BtsIMutI	CAGTG	2 cut(s)	421, 521
Cac8I	GCNNGC	9 cut(s)	302, 370, 563, 687, 718, 793, 837, 865, 869
CaiI	CAGNNNCTG	1 cut(s)	91
CfoI	GCGC	4 cut(s)	116, 281, 533, 697
Cfr10I	RCCGGY	3 cut(s)	348, 368, 685
Cfr13I	GGNCC	8 cut(s)	223, 224, 511, 537, 560, 583, 683, 847
Cfr9I	CCCGGG	2 cut(s)	468, 748
CsiI	ACCWGGT	1 cut(s)	354
Csp6I	GTAC	5 cut(s)	103, 154, 268, 453, 661
CviAII	CATG	3 cut(s)	613, 841, 864
CviQI	GTAC	5 cut(s)	103, 154, 268, 453, 661
DinI	GGCGCC	1 cut(s)	280
DpnI	GATC	1 cut(s)	617
DpnII	GATC	1 cut(s)	615
DrdI	GACNNNNNNGTC	1 cut(s)	425
DriI	GACNNNNNGTC	1 cut(s)	478
DseDI	GACNNNNNNGTC	1 cut(s)	425
EaeI	YGGCCR	4 cut(s)	51, 157, 523, 687
Eam1104I	CTCTTC	1 cut(s)	123
Eam1105I	GACNNNNNGTC	1 cut(s)	478
EarI	CTCTTC	1 cut(s)	123
EciI	GGCGGA	1 cut(s)	454
Eco130I	CCWWGG	1 cut(s)	679
Eco147I	AGGCCT	1 cut(s)	320
Eco24I	GRGCYC	2 cut(s)	60, 227
Eco31I	GGTCTC	1 cut(s)	715
Eco47I	GGWCC	2 cut(s)	511, 847
Eco88I	CYCGRG	3 cut(s)	468, 701, 748
EcoNI	CCTNNNNNAGG	1 cut(s)	314
EcoO109I	RGGNCCY	2 cut(s)	223, 847
EcoRII	CCWGG	5 cut(s)	90, 245, 354, 533, 768
EcoT14I	CCWWGG	1 cut(s)	679
EcoT38I	GRGCYC	2 cut(s)	60, 227
EgeI	GGCGCC	1 cut(s)	280
EheI	GGCGCC	1 cut(s)	280
ErhI	CCWWGG	1 cut(s)	679
FaeI	CATG	3 cut(s)	616, 844, 867
FaiI	YATR	5 cut(s)	614, 620, 745, 842, 865
FaqI	GGGAC	3 cut(s)	322, 485, 860
FatI	CATG	3 cut(s)	612, 840, 863
FauI	CCCGC	5 cut(s)	213, 570, 579, 634, 858
FbaI	TGATCA	1 cut(s)	615
FblI	GTMKAC	2 cut(s)	192, 429
Fnu4HI	GCNGC	6 cut(s)	86, 277, 445, 448, 698, 872
FokI	GGATG	1 cut(s)	185
FriOI	GRGCYC	2 cut(s)	60, 227
FseI	GGCCGGCC	1 cut(s)	689
Fsp4HI	GCNGC	6 cut(s)	86, 277, 445, 448, 698, 872
GlaI	GCGC	4 cut(s)	115, 280, 532, 696
GluI	GCNGC	6 cut(s)	86, 277, 445, 448, 698, 872
HaeII	RGCGCY	2 cut(s)	117, 282
HhaI	GCGC	4 cut(s)	116, 281, 533, 697
Hin1I	GRCGYC	2 cut(s)	279, 597
Hin1II	CATG	3 cut(s)	616, 844, 867
Hin6I	GCGC	4 cut(s)	114, 279, 531, 695
HinP1I	GCGC	4 cut(s)	114, 279, 531, 695
HincII	GTYRAC	4 cut(s)	193, 379, 430, 607
HindII	GTYRAC	4 cut(s)	193, 379, 430, 607
HphI	GGTGA	4 cut(s)	127, 157, 536, 823
Hpy166II	GTNNAC	6 cut(s)	193, 379, 430, 607, 775, 814
Hpy188I	TCNGA	3 cut(s)	332, 602, 734
Hpy8I	GTNNAC	6 cut(s)	193, 379, 430, 607, 775, 814
Hpy99I	CGWCG	6 cut(s)	194, 296, 299, 434, 599, 602
HpyAV	CCTTC	1 cut(s)	382
HpyCH4III	ACNGT	2 cut(s)	139, 649
HpyCH4IV	ACGT	4 cut(s)	399, 420, 489, 597
HpyCH4V	TGCA	3 cut(s)	720, 863, 867
HpyF10VI	GCNNNNNNNGC	6 cut(s)	94, 389, 441, 571, 713, 788
HpySE526I	ACGT	4 cut(s)	399, 420, 489, 597
Hsp92I	GRCGYC	2 cut(s)	279, 597
Hsp92II	CATG	3 cut(s)	616, 844, 867
HspAI	GCGC	4 cut(s)	114, 279, 531, 695
KasI	GGCGCC	1 cut(s)	278
KflI	GGGWCCC	1 cut(s)	847
KpnI	GGTACC	1 cut(s)	456
KroI	GCCGGC	2 cut(s)	368, 685
KroNI	GCCGGC	2 cut(s)	370, 687
Ksp22I	TGATCA	1 cut(s)	615
Kzo9I	GATC	1 cut(s)	615
LguI	GCTCTTC	1 cut(s)	123
LmnI	GCTCC	3 cut(s)	82, 185, 467
Lsp1109I	GCAGC	2 cut(s)	97, 434
MabI	ACCWGGT	1 cut(s)	354
MaeII	ACGT	4 cut(s)	399, 420, 489, 597
MaeIII	GTNAC	2 cut(s)	416, 649
MalI	GATC	1 cut(s)	617
MbiI	CCGCTC	1 cut(s)	700
MboI	GATC	1 cut(s)	615
MboII	GAAGA	1 cut(s)	110
MhlI	GDGCHC	4 cut(s)	60, 99, 227, 521
MluI	ACGCGT	1 cut(s)	381
Mly113I	GGCGCC	1 cut(s)	279
MmeI	TCCRAC	2 cut(s)	199, 580
MroNI	GCCGGC	2 cut(s)	368, 685
MslI	CAYNNNNRTG	1 cut(s)	398
MspA1I	CMGCKG	1 cut(s)	447
MvaI	CCWGG	5 cut(s)	92, 247, 356, 535, 770
MvnI	CGCG	3 cut(s)	383, 695, 803
MwoI	GCNNNNNNNGC	6 cut(s)	94, 389, 441, 571, 713, 788
NaeI	GCCGGC	2 cut(s)	370, 687
NarI	GGCGCC	1 cut(s)	279
NdeII	GATC	1 cut(s)	615
NgoMIV	GCCGGC	2 cut(s)	368, 685
NlaIII	CATG	3 cut(s)	616, 844, 867
NmeAIII	GCCGAG	2 cut(s)	79, 321
NmuCI	GTSAC	1 cut(s)	416
NspI	RCATGY	1 cut(s)	867
PaeI	GCATGC	1 cut(s)	867
PaeR7I	CTCGAG	1 cut(s)	701
PceI	AGGCCT	1 cut(s)	320
PciSI	GCTCTTC	1 cut(s)	123
PcsI	WCGNNNNNNNCGW	1 cut(s)	426
PdiI	GCCGGC	2 cut(s)	370, 687
PkrI	GCNGC	6 cut(s)	87, 278, 446, 449, 699, 873
PluTI	GGCGCC	1 cut(s)	282
Ppu21I	YACGTR	1 cut(s)	490
PpuMI	RGGWCCY	1 cut(s)	847
Psp5II	RGGWCCY	1 cut(s)	847
Psp6I	CCWGG	5 cut(s)	90, 245, 354, 533, 768
PspGI	CCWGG	5 cut(s)	90, 245, 354, 533, 768
PspOMI	GGGCCC	1 cut(s)	223
PspPI	GGNCC	8 cut(s)	223, 224, 511, 537, 560, 583, 683, 847
PspPPI	RGGWCCY	1 cut(s)	847
PspXI	VCTCGAGB	1 cut(s)	701
PstNI	CAGNNNCTG	1 cut(s)	91
RigI	GGCCGGCC	1 cut(s)	689
RsaI	GTAC	5 cut(s)	104, 155, 269, 454, 662
RsaNI	GTAC	5 cut(s)	103, 154, 268, 453, 661
RseI	CAYNNNNRTG	1 cut(s)	398
SalI	GTCGAC	2 cut(s)	191, 428
SapI	GCTCTTC	1 cut(s)	123
SatI	GCNGC	6 cut(s)	86, 277, 445, 448, 698, 872
Sau3AI	GATC	1 cut(s)	615
Sau96I	GGNCC	8 cut(s)	223, 224, 511, 537, 560, 583, 683, 847
SduI	GDGCHC	4 cut(s)	60, 99, 227, 521
SetI	ASST	9 cut(s)	357, 402, 423, 492, 600, 627, 797, 827, 860
SexAI	ACCWGGT	1 cut(s)	354
SfcI	CTRYAG	1 cut(s)	439
SfoI	GGCGCC	1 cut(s)	280
Sfr274I	CTCGAG	1 cut(s)	701
SinI	GGWCC	2 cut(s)	511, 847
SlaI	CTCGAG	1 cut(s)	701
SmaI	CCCGGG	2 cut(s)	470, 750
SmiMI	CAYNNNNRTG	1 cut(s)	398
SmlI	CTYRAG	2 cut(s)	98, 701
SmoI	CTYRAG	2 cut(s)	98, 701
SphI	GCATGC	1 cut(s)	867
SseBI	AGGCCT	1 cut(s)	320
SspDI	GGCGCC	1 cut(s)	278
StuI	AGGCCT	1 cut(s)	320
StyI	CCWWGG	1 cut(s)	679
TaaI	ACNGT	2 cut(s)	139, 649
TaiI	ACGT	4 cut(s)	402, 423, 492, 600
TaqI	TCGA	3 cut(s)	192, 429, 702
TatI	WGTACW	1 cut(s)	267
TauI	GCSGC	4 cut(s)	279, 447, 700, 874
TscAI	CASTG	2 cut(s)	421, 521
TseFI	GTSAC	1 cut(s)	416
TseI	GCWGC	2 cut(s)	85, 447
Tsp45I	GTSAC	1 cut(s)	416
TspDTI	ATGAA	1 cut(s)	187
TspGWI	ACGGA	1 cut(s)	648
TspMI	CCCGGG	2 cut(s)	468, 748
TspRI	CASTG	2 cut(s)	421, 521
VpaK11BI	GGWCC	2 cut(s)	511, 847
XagI	CCTNNNNNAGG	1 cut(s)	314
XceI	RCATGY	1 cut(s)	867
XhoI	CTCGAG	1 cut(s)	701
XmaI	CCCGGG	2 cut(s)	468, 748
XmiI	GTMKAC	2 cut(s)	192, 429
ZraI	GACGTC	1 cut(s)	598

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.