MD05G1042900.v1.1

Phosphate-induced protein 1 conserved region

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Reverse (-)
7300835 .. 7301716
882 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1042900.v1.1.491

Sequence Viewer

Length: 882 bp
ATGTATCCGATTTACCATTTTGCCACTGCTCTCTTGCTCCTTCTTTTGGTGGCGAAGCCCAGTTTTGGCGCTTTAGTGGAGGAGCAGCCACTGGTGCTCAAGTACCACAACGGCGCTCTTCTTAAGGGCAACATCCCTGTCAATCTTATTTGGTACGGCAGCTTCACTCCTATCCAAAGGTCCATCATCGTCGACTTCATCCACTCCCTCGCTCCCCGGCGTTCCCCACTCCCCTCCGCCTCCTCCTGGTGGAAAACCACCGAGAAGTACAGGGGCGGCGCCACCAATCTCCTCGTCGGCAGGCAAATCCTCCACGAGGCCTACTCTCTCGGAAAGTCCCTCCGTAACCGACACCTGGTGGCCCTCGCCGGCAAAGTCAACGCGTTGAACGCCATCAACGTTGTTTTGACTGCCAGTGACGTGGCGGTCGACGGCTTCTGTAGCCGCTGCGGGACCCACGGCTCCAACCGGGATAAAAAGACGGCTTACGTGTGGGTTGGGAACTCGGTGGTCCAGTGCCCCGGCCAATGCGCCTGGCCCTTTCACCAGCCCATTTACGGCCCGCAAACTCCGCCGTTAGTGGCTCCGAACGGCGACGTTGGAGTTGATGGCATGATCATAAACCTCGCCACTCTCTTGGCGGGAGCCGTAACCAATCCATACAATAATGGGTACTTCCAAGGGCCGTCCAGCGCGCCACTCGAGGCCGTTTCTGCCTGCACCGGCGTTTTCGGAACCGGGGCCTACCCCGGGTATCCGGGTCGGGTTCTGGTGGATAAGGCGACCGGGGCGAGCTACAACGCGGTTGGGGTAAACGGGCGTAGGTTCCTATTGCCAGCCATGTGGGACCCGCAAACCTCTGCATGTAAGCCGCTTCTGTGA

Protein Analysis

294

Amino Acids

31.36

Weight (kDa)

9.39

Isoelectric Point (pI)

29.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Phi_1 PF04674 33 - 290 6.3e-118 Phosphate-induced protein 1 conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 425
AccB1I GGYRCC 1 cut(s) 278
AccI GTMKAC 2 cut(s) 192, 429
AccII CGCG 3 cut(s) 383, 695, 803
AclI AACGTT 1 cut(s) 399
AcoI YGGCCR 1 cut(s) 523
AcyI GRCGYC 1 cut(s) 279
AdeI CACNNNGTG 1 cut(s) 358
AfaI GTAC 4 cut(s) 104, 155, 269, 674
AfiI CCNNNNNNNGG 8 cut(s) 46, 65, 246, 249, 316, 355, 557, 750
AflII CTTAAG 1 cut(s) 122
AflIII ACRYGT 2 cut(s) 381, 489
AgsI TTSAA 1 cut(s) 388
AjiI CACGTC 1 cut(s) 421
AjnI CCWGG 3 cut(s) 245, 354, 533
AluBI AGCT 2 cut(s) 162, 795
AluI AGCT 2 cut(s) 162, 795
Alw21I GWGCWC 1 cut(s) 99
AlwNI CAGNNNCTG 1 cut(s) 91
Ama87I CYCGRG 2 cut(s) 701, 749
AoxI GGCC 8 cut(s) 318, 360, 523, 536, 559, 683, 705, 741
ApeKI GCWGC 3 cut(s) 85, 159, 447
AspLEI GCGC 6 cut(s) 71, 116, 281, 533, 695, 697
AspS9I GGNCC 9 cut(s) 180, 361, 453, 511, 537, 560, 683, 741, 847
AsuC2I CCSGG 8 cut(s) 217, 470, 522, 739, 750, 751, 759, 787
AsuHPI GGTGA 1 cut(s) 536
AvaI CYCGRG 2 cut(s) 701, 749
AvaII GGWCC 4 cut(s) 180, 453, 511, 847
BaeGI GKGCMC 1 cut(s) 521
BanI GGYRCC 1 cut(s) 278
BarI GAAGNNNNNNTAC 2 cut(s) 146, 178
BauI CACGAG 1 cut(s) 314
Bbv12I GWGCWC 1 cut(s) 99
BbvI GCAGC 3 cut(s) 97, 171, 434
BccI CCATC 3 cut(s) 191, 401, 602
BciT130I CCWGG 3 cut(s) 247, 356, 535
BciVI GTATCC 2 cut(s) 15, 765
BclI TGATCA 1 cut(s) 615
BcnI CCSGG 8 cut(s) 217, 470, 522, 739, 750, 751, 759, 787
BfmI CTRYAG 1 cut(s) 439
BfoI RGCGCY 3 cut(s) 72, 117, 282
BfrI CTTAAG 1 cut(s) 122
BfuI GTATCC 2 cut(s) 15, 765
BisI GCNGC 6 cut(s) 86, 160, 277, 445, 448, 872
BlsI GCNGC 6 cut(s) 87, 161, 278, 446, 449, 873
Bme18I GGWCC 4 cut(s) 180, 453, 511, 847
BmeT110I CYCGRG 2 cut(s) 701, 749
BmgBI CACGTC 1 cut(s) 421
BmgT120I GGNCC 9 cut(s) 180, 361, 453, 511, 537, 560, 683, 741, 847
BmrI ACTGGG 1 cut(s) 54
BmuI ACTGGG 1 cut(s) 54
BplI GAGNNNNNCTC 2 cut(s) 308, 340
BpuEI CTTGAG 1 cut(s) 83
BpuMI CCSGG 8 cut(s) 217, 470, 522, 739, 750, 751, 759, 787
BsaAI YACGTR 1 cut(s) 490
BsaHI GRCGYC 1 cut(s) 279
BsaJI CCNNGG 8 cut(s) 215, 457, 520, 679, 738, 748, 749, 786
Bsc4I CCNNNNNNNGG 8 cut(s) 46, 65, 246, 249, 316, 355, 557, 750
Bse118I RCCGGY 2 cut(s) 368, 722
Bse1I ACTGG 4 cut(s) 60, 96, 414, 514
BseBI CCWGG 3 cut(s) 247, 356, 535
BseDI CCNNGG 8 cut(s) 215, 457, 520, 679, 738, 748, 749, 786
BseGI GGATG 2 cut(s) 132, 198
BseLI CCNNNNNNNGG 8 cut(s) 46, 65, 246, 249, 316, 355, 557, 750
BseNI ACTGG 4 cut(s) 60, 96, 414, 514
BsePI GCGCGC 1 cut(s) 693
BseRI GAGGAG 3 cut(s) 95, 232, 281
BseSI GKGCMC 1 cut(s) 521
BseXI GCAGC 3 cut(s) 97, 171, 434
BsgI GTGCAG 1 cut(s) 703
Bsh1236I CGCG 3 cut(s) 383, 695, 803
Bsh1285I CGRYCG 2 cut(s) 429, 786
BshFI GGCC 8 cut(s) 320, 362, 525, 538, 561, 685, 707, 743
BshNI GGYRCC 1 cut(s) 278
BsiEI CGRYCG 2 cut(s) 429, 786
BsiHKAI GWGCWC 1 cut(s) 99
BsiHKCI CYCGRG 2 cut(s) 701, 749
BsiSI CCGG 9 cut(s) 217, 369, 469, 522, 723, 738, 750, 758, 786
BslFI GGGAC 3 cut(s) 322, 466, 860
BslI CCNNNNNNNGG 8 cut(s) 46, 65, 246, 249, 316, 355, 557, 750
BsmFI GGGAC 3 cut(s) 322, 466, 860
BsnI GGCC 8 cut(s) 320, 362, 525, 538, 561, 685, 707, 743
BsoBI CYCGRG 2 cut(s) 701, 749
Bsp1286I GDGCHC 2 cut(s) 99, 521
Bsp143I GATC 1 cut(s) 615
BspANI GGCC 8 cut(s) 320, 362, 525, 538, 561, 685, 707, 743
BspFNI CGCG 3 cut(s) 383, 695, 803
BspQI GCTCTTC 1 cut(s) 123
BspT107I GGYRCC 1 cut(s) 278
BspTI CTTAAG 1 cut(s) 122
BsrFI RCCGGY 2 cut(s) 368, 722
BsrI ACTGG 4 cut(s) 60, 96, 414, 514
BssAI RCCGGY 2 cut(s) 368, 722
BssECI CCNNGG 8 cut(s) 215, 457, 520, 679, 738, 748, 749, 786
BssHII GCGCGC 1 cut(s) 693
BssMI GATC 1 cut(s) 615
BssNI GRCGYC 1 cut(s) 279
BssSI CACGAG 1 cut(s) 314
BssT1I CCWWGG 1 cut(s) 679
Bst2BI CACGAG 1 cut(s) 314
Bst2UI CCWGG 3 cut(s) 247, 356, 535
Bst6I CTCTTC 1 cut(s) 123
BstACI GRCGYC 1 cut(s) 279
BstAFI CTTAAG 1 cut(s) 122
BstBAI YACGTR 1 cut(s) 490
BstC8I GCNNGC 7 cut(s) 302, 370, 563, 695, 718, 793, 837
BstDSI CCRYGG 1 cut(s) 457
BstENI CCTNNNNNAGG 1 cut(s) 314
BstF5I GGATG 2 cut(s) 132, 198
BstFNI CGCG 3 cut(s) 383, 695, 803
BstH2I RGCGCY 3 cut(s) 72, 117, 282
BstHHI GCGC 6 cut(s) 71, 116, 281, 533, 695, 697
BstKTI GATC 1 cut(s) 618
BstMBI GATC 1 cut(s) 615
BstMCI CGRYCG 2 cut(s) 429, 786
BstMWI GCNNNNNNNGC 6 cut(s) 94, 389, 441, 571, 713, 788
BstNI CCWGG 3 cut(s) 247, 356, 535
BstNSI RCATGY 1 cut(s) 867
BstSFI CTRYAG 1 cut(s) 439
BstSLI GKGCMC 1 cut(s) 521
BstUI CGCG 3 cut(s) 383, 695, 803
BstV1I GCAGC 3 cut(s) 97, 171, 434
BstXI CCANNNNNNTGG 3 cut(s) 421, 637, 843
BsuI GTATCC 2 cut(s) 15, 765
BsuRI GGCC 8 cut(s) 320, 362, 525, 538, 561, 685, 707, 743
BtgI CCRYGG 1 cut(s) 457
BtrI CACGTC 1 cut(s) 421
BtsCI GGATG 2 cut(s) 132, 198
BtsI GCAGTG 1 cut(s) 24
BtsIMutI CAGTG 4 cut(s) 24, 89, 421, 521
Cac8I GCNNGC 7 cut(s) 302, 370, 563, 695, 718, 793, 837
CaiI CAGNNNCTG 1 cut(s) 91
CfoI GCGC 6 cut(s) 71, 116, 281, 533, 695, 697
Cfr10I RCCGGY 2 cut(s) 368, 722
Cfr13I GGNCC 9 cut(s) 180, 361, 453, 511, 537, 560, 683, 741, 847
Cfr9I CCCGGG 1 cut(s) 749
CsiI ACCWGGT 1 cut(s) 354
Csp6I GTAC 4 cut(s) 103, 154, 268, 673
CviAII CATG 3 cut(s) 613, 841, 864
CviQI GTAC 4 cut(s) 103, 154, 268, 673
DinI GGCGCC 1 cut(s) 280
DpnI GATC 1 cut(s) 617
DpnII GATC 1 cut(s) 615
DraIII CACNNNGTG 1 cut(s) 358
DrdI GACNNNNNNGTC 1 cut(s) 425
DseDI GACNNNNNNGTC 1 cut(s) 425
EaeI YGGCCR 1 cut(s) 523
Eam1104I CTCTTC 1 cut(s) 123
EarI CTCTTC 1 cut(s) 123
EciI GGCGGA 2 cut(s) 226, 561
Eco130I CCWWGG 1 cut(s) 679
Eco147I AGGCCT 1 cut(s) 320
Eco47I GGWCC 4 cut(s) 180, 453, 511, 847
Eco88I CYCGRG 2 cut(s) 701, 749
EcoNI CCTNNNNNAGG 1 cut(s) 314
EcoO109I RGGNCCY 3 cut(s) 453, 741, 847
EcoRII CCWGG 3 cut(s) 245, 354, 533
EcoT14I CCWWGG 1 cut(s) 679
EgeI GGCGCC 1 cut(s) 280
EheI GGCGCC 1 cut(s) 280
ErhI CCWWGG 1 cut(s) 679
FaeI CATG 3 cut(s) 616, 844, 867
FaiI YATR 5 cut(s) 614, 620, 661, 842, 865
FaqI GGGAC 3 cut(s) 322, 466, 860
FatI CATG 3 cut(s) 612, 840, 863
FauI CCCGC 4 cut(s) 443, 570, 634, 858
FbaI TGATCA 1 cut(s) 615
FblI GTMKAC 2 cut(s) 192, 429
Fnu4HI GCNGC 6 cut(s) 86, 160, 277, 445, 448, 872
FokI GGATG 2 cut(s) 119, 185
Fsp4HI GCNGC 6 cut(s) 86, 160, 277, 445, 448, 872
GlaI GCGC 6 cut(s) 70, 115, 280, 532, 694, 696
GluI GCNGC 6 cut(s) 86, 160, 277, 445, 448, 872
HaeII RGCGCY 3 cut(s) 72, 117, 282
HaeIII GGCC 8 cut(s) 320, 362, 525, 538, 561, 685, 707, 743
HapII CCGG 9 cut(s) 217, 369, 469, 522, 723, 738, 750, 758, 786
HhaI GCGC 6 cut(s) 71, 116, 281, 533, 695, 697
Hin1I GRCGYC 1 cut(s) 279
Hin1II CATG 3 cut(s) 616, 844, 867
Hin6I GCGC 6 cut(s) 69, 114, 279, 531, 693, 695
HinP1I GCGC 6 cut(s) 69, 114, 279, 531, 693, 695
HincII GTYRAC 3 cut(s) 193, 379, 430
HindII GTYRAC 3 cut(s) 193, 379, 430
HpaII CCGG 9 cut(s) 217, 369, 469, 522, 723, 738, 750, 758, 786
HphI GGTGA 1 cut(s) 536
Hpy166II GTNNAC 4 cut(s) 193, 379, 430, 814
Hpy188I TCNGA 4 cut(s) 9, 332, 588, 734
Hpy8I GTNNAC 4 cut(s) 193, 379, 430, 814
Hpy99I CGWCG 4 cut(s) 194, 299, 434, 599
HpyAV CCTTC 1 cut(s) 50
HpyCH4IV ACGT 4 cut(s) 399, 420, 489, 597
HpyCH4V TGCA 2 cut(s) 720, 863
HpyF10VI GCNNNNNNNGC 6 cut(s) 94, 389, 441, 571, 713, 788
HpySE526I ACGT 4 cut(s) 399, 420, 489, 597
Hsp92I GRCGYC 1 cut(s) 279
Hsp92II CATG 3 cut(s) 616, 844, 867
HspAI GCGC 6 cut(s) 69, 114, 279, 531, 693, 695
KasI GGCGCC 1 cut(s) 278
KflI GGGWCCC 2 cut(s) 453, 847
KroI GCCGGC 1 cut(s) 368
KroNI GCCGGC 1 cut(s) 370
Ksp22I TGATCA 1 cut(s) 615
Kzo9I GATC 1 cut(s) 615
LguI GCTCTTC 1 cut(s) 123
LmnI GCTCC 6 cut(s) 42, 82, 217, 467, 589, 644
Lsp1109I GCAGC 3 cut(s) 97, 171, 434
MabI ACCWGGT 1 cut(s) 354
MaeII ACGT 4 cut(s) 399, 420, 489, 597
MaeIII GTNAC 3 cut(s) 344, 416, 649
MalI GATC 1 cut(s) 617
MboI GATC 1 cut(s) 615
MboII GAAGA 1 cut(s) 110
MhlI GDGCHC 2 cut(s) 99, 521
MluI ACGCGT 1 cut(s) 381
Mly113I GGCGCC 1 cut(s) 279
MmeI TCCRAC 2 cut(s) 489, 580
MroNI GCCGGC 1 cut(s) 368
MseI TTAA 1 cut(s) 123
MspA1I CMGCKG 1 cut(s) 447
MspCI CTTAAG 1 cut(s) 122
MspI CCGG 9 cut(s) 217, 369, 469, 522, 723, 738, 750, 758, 786
MvaI CCWGG 3 cut(s) 247, 356, 535
MvnI CGCG 3 cut(s) 383, 695, 803
MwoI GCNNNNNNNGC 6 cut(s) 94, 389, 441, 571, 713, 788
NaeI GCCGGC 1 cut(s) 370
NarI GGCGCC 1 cut(s) 279
NciI CCSGG 8 cut(s) 217, 470, 522, 739, 750, 751, 759, 787
NdeII GATC 1 cut(s) 615
NgoMIV GCCGGC 1 cut(s) 368
NlaIII CATG 3 cut(s) 616, 844, 867
NmuCI GTSAC 1 cut(s) 416
NspI RCATGY 1 cut(s) 867
PaeR7I CTCGAG 1 cut(s) 701
PauI GCGCGC 1 cut(s) 693
PceI AGGCCT 1 cut(s) 320
PciSI GCTCTTC 1 cut(s) 123
PcsI WCGNNNNNNNCGW 2 cut(s) 396, 426
PdiI GCCGGC 1 cut(s) 370
PkrI GCNGC 6 cut(s) 87, 161, 278, 446, 449, 873
PluTI GGCGCC 1 cut(s) 282
Ppu21I YACGTR 1 cut(s) 490
PpuMI RGGWCCY 2 cut(s) 453, 847
Psp1406I AACGTT 1 cut(s) 399
Psp5II RGGWCCY 2 cut(s) 453, 847
Psp6I CCWGG 3 cut(s) 245, 354, 533
PspGI CCWGG 3 cut(s) 245, 354, 533
PspPI GGNCC 9 cut(s) 180, 361, 453, 511, 537, 560, 683, 741, 847
PspPPI RGGWCCY 2 cut(s) 453, 847
PspXI VCTCGAGB 1 cut(s) 701
PstNI CAGNNNCTG 1 cut(s) 91
PteI GCGCGC 1 cut(s) 693
RsaI GTAC 4 cut(s) 104, 155, 269, 674
RsaNI GTAC 4 cut(s) 103, 154, 268, 673
SalI GTCGAC 2 cut(s) 191, 428
SapI GCTCTTC 1 cut(s) 123
SaqAI TTAA 1 cut(s) 123
SatI GCNGC 6 cut(s) 86, 160, 277, 445, 448, 872
Sau3AI GATC 1 cut(s) 615
Sau96I GGNCC 9 cut(s) 180, 361, 453, 511, 537, 560, 683, 741, 847
SduI GDGCHC 2 cut(s) 99, 521
SexAI ACCWGGT 1 cut(s) 354
SfcI CTRYAG 1 cut(s) 439
SfoI GGCGCC 1 cut(s) 280
Sfr274I CTCGAG 1 cut(s) 701
SgrAI CRCCGGYG 1 cut(s) 722
SinI GGWCC 4 cut(s) 180, 453, 511, 847
SlaI CTCGAG 1 cut(s) 701
SmaI CCCGGG 1 cut(s) 751
SmlI CTYRAG 3 cut(s) 98, 122, 701
SmoI CTYRAG 3 cut(s) 98, 122, 701
SseBI AGGCCT 1 cut(s) 320
SspDI GGCGCC 1 cut(s) 278
StuI AGGCCT 1 cut(s) 320
StyI CCWWGG 1 cut(s) 679
TaiI ACGT 4 cut(s) 402, 423, 492, 600
TaqI TCGA 3 cut(s) 192, 429, 702
TatI WGTACW 1 cut(s) 267
TauI GCSGC 3 cut(s) 279, 447, 874
Tru1I TTAA 1 cut(s) 123
Tru9I TTAA 1 cut(s) 123
TscAI CASTG 4 cut(s) 31, 96, 421, 521
TseFI GTSAC 1 cut(s) 416
TseI GCWGC 3 cut(s) 85, 159, 447
Tsp45I GTSAC 1 cut(s) 416
TspDTI ATGAA 1 cut(s) 187
TspGWI ACGGA 1 cut(s) 332
TspMI CCCGGG 1 cut(s) 749
TspRI CASTG 4 cut(s) 31, 96, 421, 521
Vha464I CTTAAG 1 cut(s) 122
VpaK11BI GGWCC 4 cut(s) 180, 453, 511, 847
XagI CCTNNNNNAGG 1 cut(s) 314
XceI RCATGY 1 cut(s) 867
XhoI CTCGAG 1 cut(s) 701
XmaI CCCGGG 1 cut(s) 749
XmiI GTMKAC 2 cut(s) 192, 429
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.