Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008223.1

Orthogroup ID

OG0002144

Physical Location & Seq

Genomic Coordinates Forward (+)

35203 .. 36030

Gene Structure 828 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008223.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

atggctctgacctatcatggtggcactttgctccaaggagacctcccagtctctatactctggtatggaaacttctcaccagcccagaaatccactgtggcagactttcttctctcccttacaaacaaccctcacaaaaatcaaaagacagctaaaccttcagtcactcaatggtggaactcagtcgaaacctacatgaaaaaagccggccaaaaaccaacccatgtttctctttctacccaactctcagaccacaactgctctctgggaaaaaccctaaaaaaatctcaaatctccgagttggcccaccgggtcaactcgcccaactcgggtggattgtcacttgtactcactgccccagatgtagcggtcgaagggttttgcatgagcaactgcgggtttcacgactcgaaccggaagtcgaactcggttttcatctgggtcgggaactcggcaactcagtgcccgggtcagtgcgcgtggccattccaccaacccatctacggaccacaaaccccgccgttggttgcacccaatgctgacgtgggggtggatggcatggtggtaaatatcgctactcttttggcgggaacagtgacaaatccgtttgcaaacgggtactacctcggatcagcagaggcgccgctagaggtggcctctgcttgtaccggggtgtatggaaagggggcgtacccgggttacgcgggggagctgctggtggactcgagcagtggcgcgagctacaatgcggtgggcgtgaatgggaggaagtacctcttgcctgctttgtttgatccttatacttctcagtgtgaggccattgtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Phi_1

Protein Analysis

275

Amino Acids

29.13

Weight (kDa)

7.02

Isoelectric Point (pI)

29.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002144)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64260
fragaria_vesca	FvH4_5g36850 FvH4_5g36960
malus_domestica	MD05G1042900.v1.1 MD08G1186400.v1.1 MD10G1050200.v1.1
prunus_persica	Prupe.1G520500_v2.0.a1 Prupe.1G520900_v2.0.a1 Prupe.8G064100_v2.0.a1
pyrus_communis	pycom05g03550 pycom08g16020 pycom10g03530
rosa_chinensis	RchiOBHm_Chr6g0271521 RchiOBHm_Chr7g0243431 RchiOBHm_Chr7g0243701
rosa_laevigata	RLG00000000839 RLG00000000847 RLG00000013724
rosa_multiflora	Rmu_sc0001036.1_g000013 Rmu_sc0008223.1_g000011 Rmu_sc0032000.1_g000003
rosa_roxburghii	Rroxscaffold_3G00222000 Rroxscaffold_3G00222110 Rroxscaffold_7G00196930
rosa_rugosa	Rorug06G0061200 Rorug07G0319200 Rorug07G0320400
rosa_samantha	Rh6AG180400 Rh6CG180200 Rh6DG172100 Rh7AG475300 Rh7AG475900 Rh7BG445200 Rh7BG446600 Rh7BG446800 Rh7BG446900 Rh7CG491500 Rh7CG492900 Rh7DG459800 Rh7DG461000
rosa_wichuraiana	Rw6G015500 Rw6G015570 Rw7G039550 Rw7G039640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	47
AccB1I	GGYRCC	1 cut(s)	640
AccII	CGCG	3 cut(s)	479, 704, 737
AciI	CCGC	7 cut(s)	368, 396, 518, 587, 644, 704, 749
AclWI	GGATC	2 cut(s)	637, 788
AcoI	YGGCCR	2 cut(s)	208, 482
AcuI	CTGAAG	1 cut(s)	144
AcyI	GRCGYC	1 cut(s)	641
AfaI	GTAC	5 cut(s)	348, 620, 667, 692, 773
AfiI	CCNNNNNNNGG	3 cut(s)	329, 503, 523
AjiI	CACGTC	1 cut(s)	544
AjuI	GAANNNNNNNTTGG	2 cut(s)	211, 243
AluBI	AGCT	3 cut(s)	152, 712, 741
AluI	AGCT	3 cut(s)	152, 712, 741
Alw26I	GTCTC	2 cut(s)	33, 55
AlwI	GGATC	2 cut(s)	637, 788
Ama87I	CYCGRG	4 cut(s)	328, 466, 694, 724
AoxI	GGCC	5 cut(s)	208, 303, 482, 654, 816
ApeKI	GCWGC	1 cut(s)	712
ArsI	GACNNNNNNTTYG	2 cut(s)	404, 436
AspLEI	GCGC	3 cut(s)	479, 643, 737
AspS9I	GGNCC	2 cut(s)	304, 506
AsuC2I	CCSGG	6 cut(s)	311, 467, 468, 670, 695, 696
AsuHPI	GGTGA	1 cut(s)	69
AvaI	CYCGRG	4 cut(s)	328, 466, 694, 724
AvaII	GGWCC	1 cut(s)	506
BaeGI	GKGCMC	1 cut(s)	467
BalI	TGGCCA	1 cut(s)	484
BanI	GGYRCC	1 cut(s)	640
BarI	GAAGNNNNNNTAC	2 cut(s)	56, 88
BbvI	GCAGC	1 cut(s)	699
BccI	CCATC	2 cut(s)	506, 548
BceAI	ACGGC	1 cut(s)	505
BcnI	CCSGG	6 cut(s)	311, 467, 468, 670, 695, 696
BcoDI	GTCTC	2 cut(s)	33, 55
BfaI	CTAG	1 cut(s)	647
BfoI	RGCGCY	1 cut(s)	644
BisI	GCNGC	2 cut(s)	644, 713
BlsI	GCNGC	2 cut(s)	645, 714
Bme1390I	CCNGG	6 cut(s)	311, 467, 468, 670, 695, 696
Bme18I	GGWCC	1 cut(s)	506
BmeT110I	CYCGRG	4 cut(s)	328, 466, 694, 724
BmgBI	CACGTC	1 cut(s)	544
BmgT120I	GGNCC	2 cut(s)	304, 506
BmiI	GGNNCC	1 cut(s)	642
BmrFI	CCNGG	6 cut(s)	311, 467, 468, 670, 695, 696
BmrI	ACTGGG	1 cut(s)	41
BmuI	ACTGGG	1 cut(s)	41
BplI	GAGNNNNNCTC	2 cut(s)	641, 673
BpuMI	CCSGG	6 cut(s)	311, 467, 468, 670, 695, 696
BsaHI	GRCGYC	1 cut(s)	641
BsaI	GGTCTC	1 cut(s)	33
BsaJI	CCNNGG	5 cut(s)	34, 466, 625, 669, 694
BsaWI	WCCGGW	1 cut(s)	414
Bsc4I	CCNNNNNNNGG	3 cut(s)	329, 503, 523
Bse118I	RCCGGY	1 cut(s)	206
Bse1I	ACTGG	1 cut(s)	47
BseDI	CCNNGG	5 cut(s)	34, 466, 625, 669, 694
BseGI	GGATG	1 cut(s)	559
BseLI	CCNNNNNNNGG	3 cut(s)	329, 503, 523
BseMII	CTCAG	4 cut(s)	195, 261, 473, 821
BseNI	ACTGG	1 cut(s)	47
BseSI	GKGCMC	1 cut(s)	467
BseXI	GCAGC	1 cut(s)	699
Bsh1236I	CGCG	3 cut(s)	479, 704, 737
Bsh1285I	CGRYCG	1 cut(s)	372
BshFI	GGCC	5 cut(s)	210, 305, 484, 656, 818
BshNI	GGYRCC	1 cut(s)	640
BsiEI	CGRYCG	1 cut(s)	372
BsiHKCI	CYCGRG	4 cut(s)	328, 466, 694, 724
BsiSI	CCGG	6 cut(s)	207, 310, 415, 467, 669, 695
BslI	CCNNNNNNNGG	3 cut(s)	329, 503, 523
BsmAI	GTCTC	2 cut(s)	33, 55
BsnI	GGCC	5 cut(s)	210, 305, 484, 656, 818
Bso31I	GGTCTC	1 cut(s)	33
BsoBI	CYCGRG	4 cut(s)	328, 466, 694, 724
Bsp1286I	GDGCHC	1 cut(s)	467
Bsp143I	GATC	2 cut(s)	629, 793
BspACI	CCGC	7 cut(s)	368, 396, 518, 587, 644, 704, 749
BspANI	GGCC	5 cut(s)	210, 305, 484, 656, 818
BspCNI	CTCAG	4 cut(s)	194, 260, 472, 820
BspFNI	CGCG	3 cut(s)	479, 704, 737
BspLI	GGNNCC	1 cut(s)	642
BspPI	GGATC	2 cut(s)	637, 788
BspT107I	GGYRCC	1 cut(s)	640
BspTNI	GGTCTC	1 cut(s)	33
BsrFI	RCCGGY	1 cut(s)	206
BsrI	ACTGG	1 cut(s)	47
BssAI	RCCGGY	1 cut(s)	206
BssECI	CCNNGG	5 cut(s)	34, 466, 625, 669, 694
BssMI	GATC	2 cut(s)	629, 793
BssNI	GRCGYC	1 cut(s)	641
BssT1I	CCWWGG	1 cut(s)	34
Bst4CI	ACNGT	2 cut(s)	97, 595
BstACI	GRCGYC	1 cut(s)	641
BstAPI	GCANNNNNTGC	1 cut(s)	536
BstC8I	GCNNGC	3 cut(s)	208, 739, 783
BstDEI	CTNAG	4 cut(s)	181, 247, 459, 807
BstF5I	GGATG	1 cut(s)	559
BstFNI	CGCG	3 cut(s)	479, 704, 737
BstH2I	RGCGCY	1 cut(s)	644
BstHHI	GCGC	3 cut(s)	479, 643, 737
BstKTI	GATC	2 cut(s)	632, 796
BstMAI	GTCTC	2 cut(s)	33, 55
BstMBI	GATC	2 cut(s)	629, 793
BstMCI	CGRYCG	1 cut(s)	372
BstMWI	GCNNNNNNNGC	1 cut(s)	536
BstSCI	CCNGG	6 cut(s)	309, 465, 466, 668, 693, 694
BstSLI	GKGCMC	1 cut(s)	467
BstUI	CGCG	3 cut(s)	479, 704, 737
BstV1I	GCAGC	1 cut(s)	699
BsuRI	GGCC	5 cut(s)	210, 305, 484, 656, 818
BtrI	CACGTC	1 cut(s)	544
BtsCI	GGATG	1 cut(s)	559
BtsI	GCAGTG	2 cut(s)	351, 736
BtsIMutI	CAGTG	7 cut(s)	93, 351, 467, 479, 600, 736, 815
Cac8I	GCNNGC	3 cut(s)	208, 739, 783
CfoI	GCGC	3 cut(s)	479, 643, 737
Cfr10I	RCCGGY	1 cut(s)	206
Cfr13I	GGNCC	2 cut(s)	304, 506
Cfr9I	CCCGGG	2 cut(s)	466, 694
Csp6I	GTAC	5 cut(s)	347, 619, 666, 691, 772
CspCI	CAANNNNNGTGG	2 cut(s)	313, 348
CviAII	CATG	5 cut(s)	17, 196, 224, 385, 559
CviQI	GTAC	5 cut(s)	347, 619, 666, 691, 772
DdeI	CTNAG	4 cut(s)	181, 247, 459, 807
DinI	GGCGCC	1 cut(s)	642
DpnI	GATC	2 cut(s)	631, 795
DpnII	GATC	2 cut(s)	629, 793
DrdI	GACNNNNNNGTC	1 cut(s)	47
DseDI	GACNNNNNNGTC	1 cut(s)	47
EaeI	YGGCCR	2 cut(s)	208, 482
Eco130I	CCWWGG	1 cut(s)	34
Eco31I	GGTCTC	1 cut(s)	33
Eco47I	GGWCC	1 cut(s)	506
Eco57I	CTGAAG	1 cut(s)	144
Eco88I	CYCGRG	4 cut(s)	328, 466, 694, 724
EcoT14I	CCWWGG	1 cut(s)	34
EgeI	GGCGCC	1 cut(s)	642
EheI	GGCGCC	1 cut(s)	642
ErhI	CCWWGG	1 cut(s)	34
FaeI	CATG	5 cut(s)	20, 199, 227, 388, 562
FaiI	YATR	9 cut(s)	18, 56, 66, 197, 225, 386, 560, 678, 801
FalI	AAGNNNNNCTT	2 cut(s)	761, 793
FatI	CATG	5 cut(s)	16, 195, 223, 384, 558
FauI	CCCGC	4 cut(s)	389, 525, 580, 697
Fnu4HI	GCNGC	2 cut(s)	644, 713
FokI	GGATG	1 cut(s)	566
Fsp4HI	GCNGC	2 cut(s)	644, 713
FspBI	CTAG	1 cut(s)	647
GlaI	GCGC	3 cut(s)	478, 642, 736
GluI	GCNGC	2 cut(s)	644, 713
HaeII	RGCGCY	1 cut(s)	644
HaeIII	GGCC	5 cut(s)	210, 305, 484, 656, 818
HapII	CCGG	6 cut(s)	207, 310, 415, 467, 669, 695
HhaI	GCGC	3 cut(s)	479, 643, 737
Hin1I	GRCGYC	1 cut(s)	641
Hin1II	CATG	5 cut(s)	20, 199, 227, 388, 562
Hin6I	GCGC	3 cut(s)	477, 641, 735
HinP1I	GCGC	3 cut(s)	477, 641, 735
HincII	GTYRAC	1 cut(s)	316
HindII	GTYRAC	1 cut(s)	316
HinfI	GANTC	2 cut(s)	407, 722
HpaII	CCGG	6 cut(s)	207, 310, 415, 467, 669, 695
HphI	GGTGA	1 cut(s)	69
Hpy166II	GTNNAC	2 cut(s)	316, 721
Hpy188I	TCNGA	4 cut(s)	9, 250, 298, 629
Hpy188III	TCNNGA	2 cut(s)	404, 445
Hpy8I	GTNNAC	2 cut(s)	316, 721
HpyAV	CCTTC	2 cut(s)	168, 368
HpyCH4III	ACNGT	2 cut(s)	97, 595
HpyCH4IV	ACGT	1 cut(s)	543
HpyCH4V	TGCA	3 cut(s)	384, 530, 611
HpyF10VI	GCNNNNNNNGC	1 cut(s)	536
HpyF3I	CTNAG	4 cut(s)	181, 247, 459, 807
HpySE526I	ACGT	1 cut(s)	543
Hsp92I	GRCGYC	1 cut(s)	641
Hsp92II	CATG	5 cut(s)	20, 199, 227, 388, 562
HspAI	GCGC	3 cut(s)	477, 641, 735
KasI	GGCGCC	1 cut(s)	640
KroI	GCCGGC	1 cut(s)	206
KroNI	GCCGGC	1 cut(s)	208
Kzo9I	GATC	2 cut(s)	629, 793
LmnI	GCTCC	2 cut(s)	36, 709
Lsp1109I	GCAGC	1 cut(s)	699
MaeI	CTAG	1 cut(s)	647
MaeII	ACGT	1 cut(s)	543
MaeIII	GTNAC	4 cut(s)	163, 339, 595, 698
MalI	GATC	2 cut(s)	631, 795
MboI	GATC	2 cut(s)	629, 793
MboII	GAAGA	1 cut(s)	101
MhlI	GDGCHC	1 cut(s)	467
MlsI	TGGCCA	1 cut(s)	484
MluNI	TGGCCA	1 cut(s)	484
Mly113I	GGCGCC	1 cut(s)	641
MlyI	GAGTC	2 cut(s)	401, 716
MnlI	CCTC	9 cut(s)	53, 141, 631, 635, 643, 667, 759, 785, 808
Mox20I	TGGCCA	1 cut(s)	484
MroNI	GCCGGC	1 cut(s)	206
MscI	TGGCCA	1 cut(s)	484
Msp20I	TGGCCA	1 cut(s)	484
MspI	CCGG	6 cut(s)	207, 310, 415, 467, 669, 695
MspR9I	CCNGG	6 cut(s)	311, 467, 468, 670, 695, 696
MvnI	CGCG	3 cut(s)	479, 704, 737
MwoI	GCNNNNNNNGC	1 cut(s)	536
NaeI	GCCGGC	1 cut(s)	208
NarI	GGCGCC	1 cut(s)	641
NciI	CCSGG	6 cut(s)	311, 467, 468, 670, 695, 696
NdeII	GATC	2 cut(s)	629, 793
NgoMIV	GCCGGC	1 cut(s)	206
NlaIII	CATG	5 cut(s)	20, 199, 227, 388, 562
NlaIV	GGNNCC	1 cut(s)	642
NmeAIII	GCCGAG	1 cut(s)	431
NmuCI	GTSAC	3 cut(s)	163, 339, 595
PaeR7I	CTCGAG	1 cut(s)	724
PdiI	GCCGGC	1 cut(s)	208
PkrI	GCNGC	2 cut(s)	645, 714
PleI	GAGTC	2 cut(s)	401, 716
PluTI	GGCGCC	1 cut(s)	644
PpsI	GAGTC	2 cut(s)	401, 716
PspN4I	GGNNCC	1 cut(s)	642
PspPI	GGNCC	2 cut(s)	304, 506
PspXI	VCTCGAGB	1 cut(s)	724
RsaI	GTAC	5 cut(s)	348, 620, 667, 692, 773
RsaNI	GTAC	5 cut(s)	347, 619, 666, 691, 772
SatI	GCNGC	2 cut(s)	644, 713
Sau3AI	GATC	2 cut(s)	629, 793
Sau96I	GGNCC	2 cut(s)	304, 506
SchI	GAGTC	2 cut(s)	401, 716
ScrFI	CCNGG	6 cut(s)	311, 467, 468, 670, 695, 696
SduI	GDGCHC	1 cut(s)	467
SfoI	GGCGCC	1 cut(s)	642
Sfr274I	CTCGAG	1 cut(s)	724
SinI	GGWCC	1 cut(s)	506
SlaI	CTCGAG	1 cut(s)	724
SmaI	CCCGGG	2 cut(s)	468, 696
SmlI	CTYRAG	1 cut(s)	724
SmoI	CTYRAG	1 cut(s)	724
SsiI	CCGC	7 cut(s)	368, 396, 518, 587, 644, 704, 749
SspDI	GGCGCC	1 cut(s)	640
SspMI	CTAG	1 cut(s)	647
StyD4I	CCNGG	6 cut(s)	309, 465, 466, 668, 693, 694
StyI	CCWWGG	1 cut(s)	34
TaaI	ACNGT	2 cut(s)	97, 595
TaiI	ACGT	1 cut(s)	546
TaqI	TCGA	5 cut(s)	186, 372, 410, 422, 725
TatI	WGTACW	1 cut(s)	346
TauI	GCSGC	1 cut(s)	646
TscAI	CASTG	7 cut(s)	100, 358, 467, 479, 600, 736, 815
TseFI	GTSAC	3 cut(s)	163, 339, 595
TseI	GCWGC	1 cut(s)	712
Tsp45I	GTSAC	3 cut(s)	163, 339, 595
TspDTI	ATGAA	2 cut(s)	212, 424
TspGWI	ACGGA	2 cut(s)	519, 594
TspMI	CCCGGG	2 cut(s)	466, 694
TspRI	CASTG	7 cut(s)	100, 358, 467, 479, 600, 736, 815
VpaK11BI	GGWCC	1 cut(s)	506
XcmI	CCANNNNNNNNNTGG	1 cut(s)	541
XhoI	CTCGAG	1 cut(s)	724
XmaI	CCCGGG	2 cut(s)	466, 694
XspI	CTAG	1 cut(s)	647

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.