RLG00000000847

Phosphate-induced protein 1 conserved region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0002144
Physical Location & Seq
Forward (+)
6551541 .. 6552467
927 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000847

Sequence Viewer

Length: 927 bp
ATGGCTTATAATTACCATTTGGCCATCTGGGTCTTCTTCCTCCTCGCACTCTGGACCTTCCTCATCAGCCCTAGTGCAGCCACACCTCGAAAGCTCTCAGCCCTCGTCCAACAACAACCTCTGGTCCTCAAGTACCACAAGGGCCCACTTCTCCATGGCAACGTCACCGTAAATCTAGTATGGTACGGCAACTTCTCCCCCAATCAACGGTCAATTCTCGTTGACTTTCTTCAGTCTCTGAGCTCTGGCCACCGCGCTCCACAGCCCTCGGTCTCGTCGTGGTGGCAGACCATTGCGGGGTACACGCACGGCCCATGCACCGTCGCTGTAGGGAATCAAATCCTCCAGCAGAGCTACTCTCTTGGCAAAACTCTCACGAACCAAAAGCTCGCGGTTCTCGCGGCGAAAGGATCAAAGGGCGGTCGTAAAACGGCGGCGGTCAACGTCGTTTTGACGGACGCTTACGTGGCGGTGGAGGGGTTCTGCATGAGCCGGTGCGGGAGTCACGGGTCGAGTCGGGGCGGGTCGGCATACGCGTGGGTGGGGAACCCGGGGAAGCAGTGCCCCGGTCAGTGCGCGTGGCCGTTTCACCAGCCGATTTACGGGCCGCAGACTCCGCCGTTGGTTTCGCCAAACGGCGACGTCGGGGTAGACGGAATGGTGATCAATCTGGCTACGGTTTTGGCGGGAACGGTGACGAATCCGTTTGATAACGGGTACTTCCAGGGAGCGGCAGGCGCGGGTTTGGAGGCGGTGAGCGCGTGCACGGGTATTTTCGGGAAAGGGGCGTACCCGGGTTATCCGGGGGAGGTCGTTTTGGACAAAACGACGGGAGCGAGTTACAATGCGGTTGGAGTACGTGGACGGAAGTATCTGCTTCCGGCGATGTGGGACCCGAAGACATCCGCGTGTAAAACACTCGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Phi_1

Protein Analysis

309

Amino Acids

32.64

Weight (kDa)

9.43

Isoelectric Point (pI)

31.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Phi_1 PF04674 43 - 307 4.7e-118 Phosphate-induced protein 1 conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 9
AatII GACGTC 1 cut(s) 645
AccBSI CCGCTC 1 cut(s) 731
AccI GTMKAC 1 cut(s) 651
AccII CGCG 8 cut(s) 255, 392, 401, 536, 578, 740, 761, 908
AclWI GGATC 1 cut(s) 418
AcoI YGGCCR 3 cut(s) 21, 247, 581
AcuI CTGAAG 1 cut(s) 215
AcyI GRCGYC 1 cut(s) 642
AfaI GTAC 6 cut(s) 134, 185, 302, 719, 791, 858
AfiI CCNNNNNNNGG 4 cut(s) 207, 297, 602, 730
AflIII ACRYGT 1 cut(s) 534
AjnI CCWGG 1 cut(s) 723
AluBI AGCT 4 cut(s) 94, 243, 354, 388
AluI AGCT 4 cut(s) 94, 243, 354, 388
Alw21I GWGCWC 2 cut(s) 245, 767
Alw26I GTCTC 2 cut(s) 240, 277
Alw44I GTGCAC 1 cut(s) 763
AlwI GGATC 1 cut(s) 418
AlwNI CAGNNNCTG 1 cut(s) 238
Ama87I CYCGRG 2 cut(s) 550, 793
AoxI GGCC 6 cut(s) 21, 142, 247, 310, 581, 605
ApaI GGGCCC 1 cut(s) 146
ApaLI GTGCAC 1 cut(s) 763
ApeKI GCWGC 1 cut(s) 77
AspLEI GCGC 4 cut(s) 257, 578, 740, 761
AspS9I GGNCC 7 cut(s) 54, 124, 142, 143, 311, 605, 892
AsuC2I CCSGG 6 cut(s) 551, 552, 567, 794, 795, 804
AsuHPI GGTGA 5 cut(s) 157, 581, 673, 706, 766
AvaI CYCGRG 2 cut(s) 550, 793
AvaII GGWCC 3 cut(s) 54, 124, 892
BaeGI GKGCMC 3 cut(s) 146, 566, 767
BaeI ACNNNNGTAYC 2 cut(s) 854, 887
BalI TGGCCA 2 cut(s) 23, 249
BanII GRGCYC 2 cut(s) 146, 245
BarI GAAGNNNNNNTAC 2 cut(s) 176, 208
BbsI GAAGAC 2 cut(s) 25, 905
Bbv12I GWGCWC 2 cut(s) 245, 767
BbvI GCAGC 1 cut(s) 89
BccI CCATC 1 cut(s) 32
BceAI ACGGC 6 cut(s) 202, 325, 447, 568, 604, 652
BciT130I CCWGG 1 cut(s) 725
BclI TGATCA 1 cut(s) 663
BcnI CCSGG 6 cut(s) 551, 552, 567, 794, 795, 804
BcoDI GTCTC 2 cut(s) 240, 277
BfaI CTAG 2 cut(s) 72, 176
BfmI CTRYAG 1 cut(s) 327
BisI GCNGC 5 cut(s) 78, 402, 435, 608, 732
BlsI GCNGC 5 cut(s) 79, 403, 436, 609, 733
Bme1390I CCNGG 7 cut(s) 551, 552, 567, 725, 794, 795, 804
Bme18I GGWCC 3 cut(s) 54, 124, 892
BmeT110I CYCGRG 2 cut(s) 550, 793
BmgT120I GGNCC 7 cut(s) 54, 124, 142, 143, 311, 605, 892
BmiI GGNNCC 4 cut(s) 144, 548, 893, 894
BmrFI CCNGG 7 cut(s) 551, 552, 567, 725, 794, 795, 804
BpiI GAAGAC 2 cut(s) 25, 905
BplI GAGNNNNNCTC 2 cut(s) 343, 375
BpmI CTGGAG 1 cut(s) 329
BpuEI CTTGAG 1 cut(s) 113
BpuMI CCSGG 6 cut(s) 551, 552, 567, 794, 795, 804
BsaAI YACGTR 2 cut(s) 466, 860
BsaHI GRCGYC 1 cut(s) 642
BsaI GGTCTC 1 cut(s) 277
BsaJI CCNNGG 8 cut(s) 154, 267, 550, 551, 565, 724, 793, 803
Bsc4I CCNNNNNNNGG 4 cut(s) 207, 297, 602, 730
Bse118I RCCGGY 1 cut(s) 492
Bse3DI GCAATG 1 cut(s) 291
BseBI CCWGG 1 cut(s) 725
BseDI CCNNGG 8 cut(s) 154, 267, 550, 551, 565, 724, 793, 803
BseGI GGATG 1 cut(s) 902
BseLI CCNNNNNNNGG 4 cut(s) 207, 297, 602, 730
BseMI GCAATG 1 cut(s) 291
BseMII CTCAG 2 cut(s) 111, 230
BseRI GAGGAG 1 cut(s) 32
BseSI GKGCMC 3 cut(s) 146, 566, 767
BseXI GCAGC 1 cut(s) 89
BsgI GTGCAG 1 cut(s) 96
Bsh1236I CGCG 8 cut(s) 255, 392, 401, 536, 578, 740, 761, 908
Bsh1285I CGRYCG 1 cut(s) 424
BshFI GGCC 6 cut(s) 23, 144, 249, 312, 583, 607
BsiEI CGRYCG 1 cut(s) 424
BsiHKAI GWGCWC 2 cut(s) 245, 767
BsiHKCI CYCGRG 2 cut(s) 550, 793
BsiSI CCGG 6 cut(s) 493, 551, 567, 794, 803, 881
BslFI GGGAC 1 cut(s) 905
BslI CCNNNNNNNGG 4 cut(s) 207, 297, 602, 730
BsmAI GTCTC 2 cut(s) 240, 277
BsmFI GGGAC 1 cut(s) 905
BsnI GGCC 6 cut(s) 23, 144, 249, 312, 583, 607
Bso31I GGTCTC 1 cut(s) 277
BsoBI CYCGRG 2 cut(s) 550, 793
Bsp120I GGGCCC 1 cut(s) 142
Bsp1286I GDGCHC 4 cut(s) 146, 245, 566, 767
Bsp143I GATC 2 cut(s) 410, 663
Bsp19I CCATGG 1 cut(s) 154
BspANI GGCC 6 cut(s) 23, 144, 249, 312, 583, 607
BspCNI CTCAG 2 cut(s) 110, 231
BspFNI CGCG 8 cut(s) 255, 392, 401, 536, 578, 740, 761, 908
BspLI GGNNCC 4 cut(s) 144, 548, 893, 894
BspPI GGATC 1 cut(s) 418
BspTNI GGTCTC 1 cut(s) 277
BsrBI CCGCTC 1 cut(s) 731
BsrDI GCAATG 1 cut(s) 291
BsrFI RCCGGY 1 cut(s) 492
BssAI RCCGGY 1 cut(s) 492
BssECI CCNNGG 8 cut(s) 154, 267, 550, 551, 565, 724, 793, 803
BssMI GATC 2 cut(s) 410, 663
BssNI GRCGYC 1 cut(s) 642
BssT1I CCWWGG 1 cut(s) 154
Bst2UI CCWGG 1 cut(s) 725
Bst4CI ACNGT 5 cut(s) 169, 210, 322, 679, 694
BstACI GRCGYC 1 cut(s) 642
BstBAI YACGTR 2 cut(s) 466, 860
BstC8I GCNNGC 3 cut(s) 390, 736, 763
BstDEI CTNAG 2 cut(s) 97, 239
BstDSI CCRYGG 1 cut(s) 154
BstF5I GGATG 1 cut(s) 902
BstFNI CGCG 8 cut(s) 255, 392, 401, 536, 578, 740, 761, 908
BstHHI GCGC 4 cut(s) 257, 578, 740, 761
BstKTI GATC 2 cut(s) 413, 666
BstMAI GTCTC 2 cut(s) 240, 277
BstMBI GATC 2 cut(s) 410, 663
BstMCI CGRYCG 1 cut(s) 424
BstMWI GCNNNNNNNGC 5 cut(s) 398, 467, 616, 737, 758
BstNI CCWGG 1 cut(s) 725
BstSCI CCNGG 7 cut(s) 549, 550, 565, 723, 792, 793, 802
BstSFI CTRYAG 1 cut(s) 327
BstSLI GKGCMC 3 cut(s) 146, 566, 767
BstUI CGCG 8 cut(s) 255, 392, 401, 536, 578, 740, 761, 908
BstV1I GCAGC 1 cut(s) 89
BstV2I GAAGAC 2 cut(s) 25, 905
BsuRI GGCC 6 cut(s) 23, 144, 249, 312, 583, 607
BtgI CCRYGG 1 cut(s) 154
BtgZI GCGATG 1 cut(s) 899
BtsCI GGATG 1 cut(s) 902
BtsI GCAGTG 1 cut(s) 566
BtsIMutI CAGTG 2 cut(s) 566, 578
Cac8I GCNNGC 3 cut(s) 390, 736, 763
CaiI CAGNNNCTG 1 cut(s) 238
CfoI GCGC 4 cut(s) 257, 578, 740, 761
Cfr10I RCCGGY 1 cut(s) 492
Cfr13I GGNCC 7 cut(s) 54, 124, 142, 143, 311, 605, 892
Cfr9I CCCGGG 2 cut(s) 550, 793
CseI GACGC 1 cut(s) 467
Csp6I GTAC 6 cut(s) 133, 184, 301, 718, 790, 857
CviAII CATG 3 cut(s) 155, 315, 487
CviQI GTAC 6 cut(s) 133, 184, 301, 718, 790, 857
DdeI CTNAG 2 cut(s) 97, 239
DpnI GATC 2 cut(s) 412, 665
DpnII GATC 2 cut(s) 410, 663
EaeI YGGCCR 3 cut(s) 21, 247, 581
EciI GGCGGA 1 cut(s) 606
Ecl136II GAGCTC 1 cut(s) 243
Eco130I CCWWGG 1 cut(s) 154
Eco24I GRGCYC 2 cut(s) 146, 245
Eco31I GGTCTC 1 cut(s) 277
Eco47I GGWCC 3 cut(s) 54, 124, 892
Eco53kI GAGCTC 1 cut(s) 243
Eco57I CTGAAG 1 cut(s) 215
Eco88I CYCGRG 2 cut(s) 550, 793
EcoICRI GAGCTC 1 cut(s) 243
EcoO109I RGGNCCY 2 cut(s) 142, 892
EcoRII CCWGG 1 cut(s) 723
EcoT14I CCWWGG 1 cut(s) 154
EcoT38I GRGCYC 2 cut(s) 146, 245
ErhI CCWWGG 1 cut(s) 154
FaeI CATG 3 cut(s) 158, 318, 490
FaiI YATR 6 cut(s) 9, 156, 181, 316, 488, 532
FaqI GGGAC 1 cut(s) 905
FatI CATG 3 cut(s) 154, 314, 486
FauI CCCGC 5 cut(s) 289, 491, 515, 679, 733
FbaI TGATCA 1 cut(s) 663
FblI GTMKAC 1 cut(s) 651
Fnu4HI GCNGC 5 cut(s) 78, 402, 435, 608, 732
FokI GGATG 1 cut(s) 889
FriOI GRGCYC 2 cut(s) 146, 245
Fsp4HI GCNGC 5 cut(s) 78, 402, 435, 608, 732
FspBI CTAG 2 cut(s) 72, 176
GlaI GCGC 4 cut(s) 256, 577, 739, 760
GluI GCNGC 5 cut(s) 78, 402, 435, 608, 732
GsuI CTGGAG 1 cut(s) 329
HaeIII GGCC 6 cut(s) 23, 144, 249, 312, 583, 607
HapII CCGG 6 cut(s) 493, 551, 567, 794, 803, 881
HgaI GACGC 1 cut(s) 467
HhaI GCGC 4 cut(s) 257, 578, 740, 761
Hin1I GRCGYC 1 cut(s) 642
Hin1II CATG 3 cut(s) 158, 318, 490
Hin6I GCGC 4 cut(s) 255, 576, 738, 759
HinP1I GCGC 4 cut(s) 255, 576, 738, 759
HincII GTYRAC 2 cut(s) 223, 442
HindII GTYRAC 2 cut(s) 223, 442
HinfI GANTC 5 cut(s) 334, 502, 514, 613, 700
HpaII CCGG 6 cut(s) 493, 551, 567, 794, 803, 881
HphI GGTGA 5 cut(s) 157, 581, 673, 706, 766
Hpy166II GTNNAC 6 cut(s) 223, 303, 442, 652, 765, 863
Hpy188I TCNGA 2 cut(s) 240, 926
Hpy188III TCNNGA 3 cut(s) 52, 376, 778
Hpy8I GTNNAC 6 cut(s) 223, 303, 442, 652, 765, 863
Hpy99I CGWCG 6 cut(s) 280, 326, 449, 644, 647, 832
HpyAV CCTTC 1 cut(s) 67
HpyCH4III ACNGT 5 cut(s) 169, 210, 322, 679, 694
HpyCH4IV ACGT 5 cut(s) 162, 444, 465, 642, 859
HpyCH4V TGCA 4 cut(s) 77, 318, 486, 765
HpyF10VI GCNNNNNNNGC 5 cut(s) 398, 467, 616, 737, 758
HpyF3I CTNAG 2 cut(s) 97, 239
HpySE526I ACGT 5 cut(s) 162, 444, 465, 642, 859
Hsp92I GRCGYC 1 cut(s) 642
Hsp92II CATG 3 cut(s) 158, 318, 490
HspAI GCGC 4 cut(s) 255, 576, 738, 759
KflI GGGWCCC 1 cut(s) 892
Ksp22I TGATCA 1 cut(s) 663
Kzo9I GATC 2 cut(s) 410, 663
LmnI GCTCC 3 cut(s) 262, 728, 833
Lsp1109I GCAGC 1 cut(s) 89
MaeI CTAG 2 cut(s) 72, 176
MaeII ACGT 5 cut(s) 162, 444, 465, 642, 859
MaeIII GTNAC 4 cut(s) 163, 503, 694, 839
MalI GATC 2 cut(s) 412, 665
MbiI CCGCTC 1 cut(s) 731
MboI GATC 2 cut(s) 410, 663
MboII GAAGA 4 cut(s) 25, 28, 221, 910
MhlI GDGCHC 4 cut(s) 146, 245, 566, 767
MlsI TGGCCA 2 cut(s) 23, 249
MluCI AATT 2 cut(s) 10, 213
MluI ACGCGT 1 cut(s) 534
MluNI TGGCCA 2 cut(s) 23, 249
MlyI GAGTC 3 cut(s) 511, 523, 607
MmeI TCCRAC 2 cut(s) 133, 832
Mox20I TGGCCA 2 cut(s) 23, 249
MscI TGGCCA 2 cut(s) 23, 249
MslI CAYNNNNRTG 2 cut(s) 535, 907
Msp20I TGGCCA 2 cut(s) 23, 249
MspI CCGG 6 cut(s) 493, 551, 567, 794, 803, 881
MspR9I CCNGG 7 cut(s) 551, 552, 567, 725, 794, 795, 804
MvaI CCWGG 1 cut(s) 725
MvnI CGCG 8 cut(s) 255, 392, 401, 536, 578, 740, 761, 908
MwoI GCNNNNNNNGC 5 cut(s) 398, 467, 616, 737, 758
NciI CCSGG 6 cut(s) 551, 552, 567, 794, 795, 804
NcoI CCATGG 1 cut(s) 154
NdeII GATC 2 cut(s) 410, 663
NlaIII CATG 3 cut(s) 158, 318, 490
NlaIV GGNNCC 4 cut(s) 144, 548, 893, 894
NmuCI GTSAC 3 cut(s) 163, 503, 694
PcsI WCGNNNNNNNCGW 3 cut(s) 275, 533, 833
PfeI GAWTC 2 cut(s) 334, 700
PkrI GCNGC 5 cut(s) 79, 403, 436, 609, 733
PleI GAGTC 3 cut(s) 510, 522, 607
PpsI GAGTC 3 cut(s) 510, 522, 607
Ppu21I YACGTR 2 cut(s) 466, 860
PpuMI RGGWCCY 1 cut(s) 892
PsiI TTATAA 1 cut(s) 9
Psp124BI GAGCTC 1 cut(s) 245
Psp5II RGGWCCY 1 cut(s) 892
Psp6I CCWGG 1 cut(s) 723
PspGI CCWGG 1 cut(s) 723
PspN4I GGNNCC 4 cut(s) 144, 548, 893, 894
PspOMI GGGCCC 1 cut(s) 142
PspPI GGNCC 7 cut(s) 54, 124, 142, 143, 311, 605, 892
PspPPI RGGWCCY 1 cut(s) 892
PstNI CAGNNNCTG 1 cut(s) 238
RsaI GTAC 6 cut(s) 134, 185, 302, 719, 791, 858
RsaNI GTAC 6 cut(s) 133, 184, 301, 718, 790, 857
RseI CAYNNNNRTG 2 cut(s) 535, 907
SacI GAGCTC 1 cut(s) 245
SatI GCNGC 5 cut(s) 78, 402, 435, 608, 732
Sau3AI GATC 2 cut(s) 410, 663
Sau96I GGNCC 7 cut(s) 54, 124, 142, 143, 311, 605, 892
SchI GAGTC 3 cut(s) 511, 523, 607
ScrFI CCNGG 7 cut(s) 551, 552, 567, 725, 794, 795, 804
SduI GDGCHC 4 cut(s) 146, 245, 566, 767
SfcI CTRYAG 1 cut(s) 327
SinI GGWCC 3 cut(s) 54, 124, 892
SmaI CCCGGG 2 cut(s) 552, 795
SmiMI CAYNNNNRTG 2 cut(s) 535, 907
SmlI CTYRAG 1 cut(s) 128
SmoI CTYRAG 1 cut(s) 128
Sse9I AATT 2 cut(s) 10, 213
SspMI CTAG 2 cut(s) 72, 176
SstI GAGCTC 1 cut(s) 245
StyD4I CCNGG 7 cut(s) 549, 550, 565, 723, 792, 793, 802
StyI CCWWGG 1 cut(s) 154
TaaI ACNGT 5 cut(s) 169, 210, 322, 679, 694
TaiI ACGT 5 cut(s) 165, 447, 468, 645, 862
TaqI TCGA 2 cut(s) 88, 512
TaqII GACCGA 1 cut(s) 259
TasI AATT 2 cut(s) 10, 213
TauI GCSGC 4 cut(s) 404, 437, 610, 734
TfiI GAWTC 2 cut(s) 334, 700
TscAI CASTG 2 cut(s) 566, 578
TseFI GTSAC 3 cut(s) 163, 503, 694
TseI GCWGC 1 cut(s) 77
Tsp45I GTSAC 3 cut(s) 163, 503, 694
TspGWI ACGGA 4 cut(s) 470, 669, 693, 880
TspMI CCCGGG 2 cut(s) 550, 793
TspRI CASTG 2 cut(s) 566, 578
VneI GTGCAC 1 cut(s) 763
VpaK11BI GGWCC 3 cut(s) 54, 124, 892
XmaI CCCGGG 2 cut(s) 550, 793
XmiI GTMKAC 1 cut(s) 651
XspI CTAG 2 cut(s) 72, 176
ZraI GACGTC 1 cut(s) 643
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.